HEADER ANTIBIOTIC 08-MAR-20 6M4P TITLE CYTOCHROME P450 MONOOXYGENASE STVP2 SUBSTRATE-BOUND STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SPECTABILIS; SOURCE 3 ORGANISM_TAXID: 68270; SOURCE 4 GENE: STVP2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS P450 ANTI-MRSA STREPTOVARICIN C METHYLENEDIOXY BRIDGE STVP2 KEYWDS 2 SUBSTRATE-BOUND STRUCTURE, ANTIBIOTIC EXPDTA X-RAY DIFFRACTION AUTHOR G.SUN,C.HU,Q.MEI,M.LUO,X.CHEN,Z.LI,Y.LIU,Z.DENG,Z.ZHANG,Y.SUN REVDAT 3 29-NOV-23 6M4P 1 REMARK REVDAT 2 23-SEP-20 6M4P 1 JRNL REVDAT 1 12-AUG-20 6M4P 0 JRNL AUTH G.SUN,C.HU,Q.MEI,M.LUO,X.CHEN,Z.LI,Y.LIU,Z.DENG,Z.ZHANG, JRNL AUTH 2 Y.SUN JRNL TITL UNCOVERING THE CYTOCHROME P450-CATALYZED METHYLENEDIOXY JRNL TITL 2 BRIDGE FORMATION IN STREPTOVARICINS BIOSYNTHESIS. JRNL REF NAT COMMUN V. 11 4501 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32908132 JRNL DOI 10.1038/S41467-020-18336-5 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 34177 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.660 REMARK 3 FREE R VALUE TEST SET COUNT : 1594 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7800 - 5.0900 0.99 3011 134 0.1956 0.2233 REMARK 3 2 5.0900 - 4.0500 0.99 2970 158 0.1836 0.2275 REMARK 3 3 4.0500 - 3.5400 0.99 2929 160 0.1966 0.2380 REMARK 3 4 3.5400 - 3.2200 0.99 2915 191 0.2297 0.2866 REMARK 3 5 3.2200 - 2.9900 0.99 2973 140 0.2471 0.3255 REMARK 3 6 2.9900 - 2.8100 1.00 2955 99 0.2709 0.3862 REMARK 3 7 2.8100 - 2.6700 0.99 2942 147 0.2659 0.2986 REMARK 3 8 2.6700 - 2.5600 1.00 2971 128 0.2644 0.3334 REMARK 3 9 2.5600 - 2.4600 1.00 2973 156 0.2596 0.3280 REMARK 3 10 2.4600 - 2.3700 1.00 2924 148 0.2567 0.2972 REMARK 3 11 2.3700 - 2.3000 1.00 3020 133 0.2603 0.2953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.333 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.331 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6114 REMARK 3 ANGLE : 0.909 8361 REMARK 3 CHIRALITY : 0.067 913 REMARK 3 PLANARITY : 0.008 1088 REMARK 3 DIHEDRAL : 21.236 942 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -15.3988 -23.6073 -14.1946 REMARK 3 T TENSOR REMARK 3 T11: 0.2694 T22: 0.2702 REMARK 3 T33: 0.2501 T12: 0.0268 REMARK 3 T13: -0.0028 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.5438 L22: 0.4395 REMARK 3 L33: 0.1360 L12: 0.3319 REMARK 3 L13: -0.0088 L23: 0.0286 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: 0.0107 S13: -0.0078 REMARK 3 S21: -0.0007 S22: 0.0035 S23: 0.0044 REMARK 3 S31: 0.0023 S32: -0.0124 S33: -0.0206 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 14-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300014978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9879 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34238 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.780 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : 0.11970 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.60530 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4OQR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SALT: 0.17M AMMONIUM ACETATE BUFFER: REMARK 280 0.085M SODIUM CITRATE TRIBASIC DIHYDRATE PH5.6 PRECIPITANT: 24%W/ REMARK 280 V POLYETHYLENE GLYCOL 4000 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.62700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLU A 3 REMARK 465 THR A 4 REMARK 465 PRO A 5 REMARK 465 ALA A 6 REMARK 465 THR A 7 REMARK 465 GLY A 80 REMARK 465 ARG A 81 REMARK 465 GLY A 174 REMARK 465 THR A 175 REMARK 465 ASP A 176 REMARK 465 ASP A 177 REMARK 465 ALA A 178 REMARK 465 ALA A 179 REMARK 465 ALA A 180 REMARK 465 VAL A 181 REMARK 465 GLU A 182 REMARK 465 ALA A 183 REMARK 465 ASP A 184 REMARK 465 VAL A 185 REMARK 465 ALA A 186 REMARK 465 ALA A 187 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 GLU B 3 REMARK 465 THR B 4 REMARK 465 PRO B 5 REMARK 465 ALA B 6 REMARK 465 THR B 7 REMARK 465 GLY B 80 REMARK 465 ARG B 81 REMARK 465 PRO B 171 REMARK 465 VAL B 172 REMARK 465 ARG B 173 REMARK 465 GLY B 174 REMARK 465 THR B 175 REMARK 465 ASP B 176 REMARK 465 ASP B 177 REMARK 465 ALA B 178 REMARK 465 ALA B 179 REMARK 465 ALA B 180 REMARK 465 VAL B 181 REMARK 465 GLU B 182 REMARK 465 ALA B 183 REMARK 465 ASP B 184 REMARK 465 VAL B 185 REMARK 465 ALA B 186 REMARK 465 ALA B 187 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 8 CG CD REMARK 470 THR A 9 OG1 CG2 REMARK 470 PHE A 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO A 84 CG CD REMARK 470 PRO A 85 CG CD REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 PRO A 87 CG CD REMARK 470 ARG A 134 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 173 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 PRO B 8 CG CD REMARK 470 THR B 9 OG1 CG2 REMARK 470 PHE B 83 CG CD1 CD2 CE1 CE2 CZ REMARK 470 PRO B 84 CG CD REMARK 470 PRO B 85 CG CD REMARK 470 ARG B 134 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 188 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 198 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA B 325 NH1 ARG B 334 2.03 REMARK 500 OE1 GLU B 123 O HOH B 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 396 CG - CD - NE ANGL. DEV. = -14.5 DEGREES REMARK 500 LEU B 104 CB - CG - CD2 ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG B 112 CD - NE - CZ ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG B 112 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 34 117.05 -165.29 REMARK 500 PRO A 85 108.53 -50.48 REMARK 500 PHE A 145 -58.55 -142.34 REMARK 500 ALA A 212 -162.41 -127.64 REMARK 500 ASP A 213 77.20 -100.73 REMARK 500 CYS A 349 111.87 -35.72 REMARK 500 PHE B 145 -55.29 -140.80 REMARK 500 ALA B 210 77.56 -160.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 112 0.16 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 750 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH A 751 DISTANCE = 6.23 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 HEM B 501 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 694 O REMARK 620 2 HEM B 501 NA 96.0 REMARK 620 3 HEM B 501 NB 82.2 83.5 REMARK 620 4 HEM B 501 NC 88.6 162.7 80.6 REMARK 620 5 HEM B 501 ND 105.5 99.4 171.4 95.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F4O A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue F4O B 502 DBREF1 6M4P A 1 401 UNP A0A286SBY7_STRST DBREF2 6M4P A A0A286SBY7 1 401 DBREF1 6M4P B 1 401 UNP A0A286SBY7_STRST DBREF2 6M4P B A0A286SBY7 1 401 SEQRES 1 A 401 MET THR GLU THR PRO ALA THR PRO THR GLY LEU PRO THR SEQRES 2 A 401 ALA ARG ALA ALA GLY CYS PRO PHE ASP PRO PRO PRO GLY SEQRES 3 A 401 LEU ALA ALA LEU ARG ASP ARG ALA PRO LEU THR ARG MET SEQRES 4 A 401 GLU PHE PRO ASN GLY HIS VAL GLY TRP LEU ALA THR GLY SEQRES 5 A 401 HIS ALA VAL VAL ARG ALA VAL LEU ALA ASP PRO ARG PHE SEQRES 6 A 401 SER HIS ARG ASN ASP ARG ARG HIS TRP PRO LEU ALA ASP SEQRES 7 A 401 ILE GLY ARG GLY PHE PRO PRO LEU PRO GLY ASP MET LEU SEQRES 8 A 401 HIS ILE ASP PRO PRO ASP HIS THR ARG TYR ARG LYS LEU SEQRES 9 A 401 LEU ALA GLY LYS PHE THR MET ARG ARG MET ARG ARG LEU SEQRES 10 A 401 THR GLY SER ALA GLN GLU ILE VAL ALA GLY LYS LEU ASP SEQRES 11 A 401 ALA MET GLU ARG HIS GLY GLY PRO LEU ASP LEU LEU GLU SEQRES 12 A 401 PHE PHE ALA ARG PRO VAL PRO THR LEU MET VAL CYS ALA SEQRES 13 A 401 LEU LEU GLY VAL PRO LEU GLN ASP ARG ALA THR PHE HIS SEQRES 14 A 401 PRO PRO VAL ARG GLY THR ASP ASP ALA ALA ALA VAL GLU SEQRES 15 A 401 ALA ASP VAL ALA ALA TYR VAL GLU MET THR TYR ALA ASP SEQRES 16 A 401 MET GLN GLU TYR PHE ARG LYS LEU VAL ALA ALA LYS ARG SEQRES 17 A 401 ALA ALA PRO ALA ASP ASP LEU LEU SER ASP LEU THR THR SEQRES 18 A 401 SER ASP LEU THR GLU ASP GLU LEU VAL GLY LEU CYS ALA SEQRES 19 A 401 VAL MET MET HIS ALA GLY VAL ASP SER THR SER ASN MET SEQRES 20 A 401 LEU ALA LEU GLY THR TRP ALA LEU LEU GLU ARG PRO ASP SEQRES 21 A 401 GLN LEU ALA ALA LEU ARG GLU ARG PRO ASP LEU ALA ASP SEQRES 22 A 401 ARG ALA VAL GLU GLU LEU MET ARG TYR MET SER VAL VAL SEQRES 23 A 401 HIS THR GLY SER ARG ALA ALA LEU GLU ASP VAL GLU LEU SEQRES 24 A 401 ALA GLY GLU VAL VAL ARG ALA GLY GLU SER VAL ALA PHE SEQRES 25 A 401 SER VAL GLN ALA ALA ASN ARG ASP PRO ALA ARG PHE ALA SEQRES 26 A 401 ASP PRO ASP THR LEU ASP ILE ARG ARG GLY ALA VAL GLY SEQRES 27 A 401 HIS LEU GLY PHE GLY TYR GLY VAL HIS GLN CYS LEU GLY SEQRES 28 A 401 MET GLN LEU ALA ARG VAL GLU MET ARG VAL ALA PHE PRO SEQRES 29 A 401 ALA LEU PHE ALA ARG PHE PRO ALA LEU ARG LEU ALA VAL SEQRES 30 A 401 PRO ALA GLY ASP VAL PRO MET ARG ASP ASP LEU VAL ILE SEQRES 31 A 401 PRO TYR GLY VAL HIS ARG LEU PRO VAL THR TRP SEQRES 1 B 401 MET THR GLU THR PRO ALA THR PRO THR GLY LEU PRO THR SEQRES 2 B 401 ALA ARG ALA ALA GLY CYS PRO PHE ASP PRO PRO PRO GLY SEQRES 3 B 401 LEU ALA ALA LEU ARG ASP ARG ALA PRO LEU THR ARG MET SEQRES 4 B 401 GLU PHE PRO ASN GLY HIS VAL GLY TRP LEU ALA THR GLY SEQRES 5 B 401 HIS ALA VAL VAL ARG ALA VAL LEU ALA ASP PRO ARG PHE SEQRES 6 B 401 SER HIS ARG ASN ASP ARG ARG HIS TRP PRO LEU ALA ASP SEQRES 7 B 401 ILE GLY ARG GLY PHE PRO PRO LEU PRO GLY ASP MET LEU SEQRES 8 B 401 HIS ILE ASP PRO PRO ASP HIS THR ARG TYR ARG LYS LEU SEQRES 9 B 401 LEU ALA GLY LYS PHE THR MET ARG ARG MET ARG ARG LEU SEQRES 10 B 401 THR GLY SER ALA GLN GLU ILE VAL ALA GLY LYS LEU ASP SEQRES 11 B 401 ALA MET GLU ARG HIS GLY GLY PRO LEU ASP LEU LEU GLU SEQRES 12 B 401 PHE PHE ALA ARG PRO VAL PRO THR LEU MET VAL CYS ALA SEQRES 13 B 401 LEU LEU GLY VAL PRO LEU GLN ASP ARG ALA THR PHE HIS SEQRES 14 B 401 PRO PRO VAL ARG GLY THR ASP ASP ALA ALA ALA VAL GLU SEQRES 15 B 401 ALA ASP VAL ALA ALA TYR VAL GLU MET THR TYR ALA ASP SEQRES 16 B 401 MET GLN GLU TYR PHE ARG LYS LEU VAL ALA ALA LYS ARG SEQRES 17 B 401 ALA ALA PRO ALA ASP ASP LEU LEU SER ASP LEU THR THR SEQRES 18 B 401 SER ASP LEU THR GLU ASP GLU LEU VAL GLY LEU CYS ALA SEQRES 19 B 401 VAL MET MET HIS ALA GLY VAL ASP SER THR SER ASN MET SEQRES 20 B 401 LEU ALA LEU GLY THR TRP ALA LEU LEU GLU ARG PRO ASP SEQRES 21 B 401 GLN LEU ALA ALA LEU ARG GLU ARG PRO ASP LEU ALA ASP SEQRES 22 B 401 ARG ALA VAL GLU GLU LEU MET ARG TYR MET SER VAL VAL SEQRES 23 B 401 HIS THR GLY SER ARG ALA ALA LEU GLU ASP VAL GLU LEU SEQRES 24 B 401 ALA GLY GLU VAL VAL ARG ALA GLY GLU SER VAL ALA PHE SEQRES 25 B 401 SER VAL GLN ALA ALA ASN ARG ASP PRO ALA ARG PHE ALA SEQRES 26 B 401 ASP PRO ASP THR LEU ASP ILE ARG ARG GLY ALA VAL GLY SEQRES 27 B 401 HIS LEU GLY PHE GLY TYR GLY VAL HIS GLN CYS LEU GLY SEQRES 28 B 401 MET GLN LEU ALA ARG VAL GLU MET ARG VAL ALA PHE PRO SEQRES 29 B 401 ALA LEU PHE ALA ARG PHE PRO ALA LEU ARG LEU ALA VAL SEQRES 30 B 401 PRO ALA GLY ASP VAL PRO MET ARG ASP ASP LEU VAL ILE SEQRES 31 B 401 PRO TYR GLY VAL HIS ARG LEU PRO VAL THR TRP HET HEM A 501 43 HET F4O A 502 55 HET HEM B 501 42 HET F4O B 502 55 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM F4O 6-METHOXY-STREPTOVARICIN C HETSYN HEM HEME FORMUL 3 HEM 2(C34 H32 FE N4 O4) FORMUL 4 F4O 2(C40 H53 N O14) FORMUL 7 HOH *301(H2 O) HELIX 1 AA1 PRO A 25 ALA A 34 1 10 HELIX 2 AA2 GLY A 52 ASP A 62 1 11 HELIX 3 AA3 PRO A 96 GLY A 107 1 12 HELIX 4 AA4 THR A 110 ARG A 116 1 7 HELIX 5 AA5 LEU A 117 GLY A 136 1 20 HELIX 6 AA6 LEU A 141 PHE A 145 1 5 HELIX 7 AA7 ARG A 147 GLY A 159 1 13 HELIX 8 AA8 PRO A 161 HIS A 169 5 9 HELIX 9 AA9 THR A 192 ALA A 210 1 19 HELIX 10 AB1 ASP A 214 THR A 221 1 8 HELIX 11 AB2 THR A 225 GLU A 257 1 33 HELIX 12 AB3 ARG A 258 ARG A 268 1 11 HELIX 13 AB4 LEU A 271 SER A 284 1 14 HELIX 14 AB5 VAL A 314 ASN A 318 1 5 HELIX 15 AB6 TYR A 344 GLN A 348 5 5 HELIX 16 AB7 CYS A 349 LEU A 350 5 2 HELIX 17 AB8 GLY A 351 PHE A 370 1 20 HELIX 18 AB9 PRO A 378 VAL A 382 5 5 HELIX 19 AC1 PRO B 24 ALA B 34 1 11 HELIX 20 AC2 GLY B 52 ASP B 62 1 11 HELIX 21 AC3 PRO B 96 ALA B 106 1 11 HELIX 22 AC4 GLY B 107 PHE B 109 5 3 HELIX 23 AC5 THR B 110 ARG B 115 1 6 HELIX 24 AC6 LEU B 117 GLY B 136 1 20 HELIX 25 AC7 LEU B 141 PHE B 145 1 5 HELIX 26 AC8 ARG B 147 GLY B 159 1 13 HELIX 27 AC9 PRO B 161 HIS B 169 5 9 HELIX 28 AD1 THR B 192 ALA B 210 1 19 HELIX 29 AD2 ASP B 214 THR B 220 1 7 HELIX 30 AD3 THR B 225 GLY B 240 1 16 HELIX 31 AD4 VAL B 241 GLU B 257 1 17 HELIX 32 AD5 ARG B 258 ARG B 268 1 11 HELIX 33 AD6 LEU B 271 SER B 284 1 14 HELIX 34 AD7 VAL B 314 ASN B 318 1 5 HELIX 35 AD8 ASP B 331 GLY B 335 5 5 HELIX 36 AD9 TYR B 344 GLN B 348 5 5 HELIX 37 AE1 CYS B 349 LEU B 350 5 2 HELIX 38 AE2 GLY B 351 PHE B 370 1 20 HELIX 39 AE3 PRO B 378 VAL B 382 5 5 SHEET 1 AA1 5 LEU A 36 GLU A 40 0 SHEET 2 AA1 5 VAL A 46 ALA A 50 -1 O GLY A 47 N MET A 39 SHEET 3 AA1 5 SER A 309 SER A 313 1 O ALA A 311 N ALA A 50 SHEET 4 AA1 5 THR A 288 ALA A 293 -1 N ARG A 291 O VAL A 310 SHEET 5 AA1 5 PHE A 65 SER A 66 -1 N SER A 66 O ALA A 292 SHEET 1 AA2 3 LEU A 139 ASP A 140 0 SHEET 2 AA2 3 PRO A 398 THR A 400 -1 O VAL A 399 N LEU A 139 SHEET 3 AA2 3 ARG A 374 LEU A 375 -1 N ARG A 374 O THR A 400 SHEET 1 AA3 2 VAL A 297 LEU A 299 0 SHEET 2 AA3 2 GLU A 302 VAL A 304 -1 O VAL A 304 N VAL A 297 SHEET 1 AA4 5 LEU B 36 GLU B 40 0 SHEET 2 AA4 5 VAL B 46 ALA B 50 -1 O GLY B 47 N MET B 39 SHEET 3 AA4 5 SER B 309 SER B 313 1 O ALA B 311 N ALA B 50 SHEET 4 AA4 5 THR B 288 ALA B 293 -1 N ARG B 291 O VAL B 310 SHEET 5 AA4 5 PHE B 65 SER B 66 -1 N SER B 66 O ALA B 292 SHEET 1 AA5 3 LEU B 139 ASP B 140 0 SHEET 2 AA5 3 PRO B 398 THR B 400 -1 O VAL B 399 N LEU B 139 SHEET 3 AA5 3 ARG B 374 LEU B 375 -1 N ARG B 374 O THR B 400 SHEET 1 AA6 2 VAL B 297 LEU B 299 0 SHEET 2 AA6 2 GLU B 302 VAL B 304 -1 O VAL B 304 N VAL B 297 LINK FE HEM B 501 O HOH B 694 1555 1555 2.63 CISPEP 1 PRO A 95 PRO A 96 0 5.49 CISPEP 2 GLY A 137 PRO A 138 0 0.71 CISPEP 3 ILE A 390 PRO A 391 0 -3.92 CISPEP 4 PRO B 95 PRO B 96 0 4.74 CISPEP 5 GLY B 137 PRO B 138 0 0.76 CISPEP 6 ILE B 390 PRO B 391 0 -2.62 SITE 1 AC1 22 HIS A 67 MET A 90 LEU A 91 HIS A 98 SITE 2 AC1 22 ARG A 102 GLY A 240 THR A 244 MET A 247 SITE 3 AC1 22 MET A 280 VAL A 286 ARG A 291 GLY A 341 SITE 4 AC1 22 PHE A 342 VAL A 346 HIS A 347 CYS A 349 SITE 5 AC1 22 GLY A 351 LEU A 354 ALA A 355 F4O A 502 SITE 6 AC1 22 HOH A 645 HOH A 655 SITE 1 AC2 16 ASN A 69 ARG A 72 TRP A 74 ASP A 89 SITE 2 AC2 16 HIS A 92 VAL A 235 HIS A 238 ALA A 239 SITE 3 AC2 16 ASP A 242 ILE A 390 PRO A 391 HEM A 501 SITE 4 AC2 16 HOH A 624 HOH A 655 HOH A 657 HOH A 662 SITE 1 AC3 22 HIS B 67 MET B 90 LEU B 91 HIS B 98 SITE 2 AC3 22 ARG B 102 GLY B 240 THR B 244 MET B 247 SITE 3 AC3 22 MET B 280 VAL B 286 ARG B 291 GLY B 341 SITE 4 AC3 22 PHE B 342 GLY B 343 HIS B 347 CYS B 349 SITE 5 AC3 22 LEU B 350 MET B 359 F4O B 502 HOH B 637 SITE 6 AC3 22 HOH B 643 HOH B 694 SITE 1 AC4 21 ASN B 69 ARG B 72 TRP B 74 ASP B 89 SITE 2 AC4 21 LEU B 91 HIS B 92 VAL B 235 HIS B 238 SITE 3 AC4 21 ALA B 239 ASP B 242 LEU B 388 VAL B 389 SITE 4 AC4 21 ILE B 390 HEM B 501 HOH B 617 HOH B 636 SITE 5 AC4 21 HOH B 643 HOH B 647 HOH B 675 HOH B 694 SITE 6 AC4 21 HOH B 695 CRYST1 61.638 87.254 78.789 90.00 112.28 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016224 0.000000 0.006648 0.00000 SCALE2 0.000000 0.011461 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013716 0.00000