HEADER DNA 10-MAR-20 6M5B TITLE X-RAY CRYSTAL STRUCTURE OF CYCLIC-PIP AND DNA COMPLEX IN A REVERSE TITLE 2 BINDING ORIENTATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*(CBR)P*AP*GP*GP*CP*CP*TP*GP*G)-3'); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: SYNTHETIC CONSTRUCT; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 32630 KEYWDS PIP, DNA EXPDTA X-RAY DIFFRACTION AUTHOR K.ABE,Y.HIROSE,H.EKI,K.TAKEDA,T.BANDO,M.ENDO,H.SUGIYAMA REVDAT 2 27-MAR-24 6M5B 1 LINK REVDAT 1 24-JUN-20 6M5B 0 JRNL AUTH K.ABE,Y.HIROSE,H.EKI,K.TAKEDA,T.BANDO,M.ENDO,H.SUGIYAMA JRNL TITL X-RAY CRYSTAL STRUCTURE OF A CYCLIC-PIP-DNA COMPLEX IN THE JRNL TITL 2 REVERSE-BINDING ORIENTATION. JRNL REF J.AM.CHEM.SOC. V. 142 10544 2020 JRNL REFN ESSN 1520-5126 JRNL PMID 32401492 JRNL DOI 10.1021/JACS.0C03972 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.940 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 14240 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0740 - 3.0008 1.00 1695 121 0.1513 0.1319 REMARK 3 2 3.0008 - 2.3822 1.00 1660 136 0.1939 0.1915 REMARK 3 3 2.3822 - 2.0812 1.00 1659 133 0.2085 0.2669 REMARK 3 4 2.0812 - 1.8909 1.00 1691 114 0.1907 0.2185 REMARK 3 5 1.8909 - 1.7554 1.00 1645 149 0.1895 0.2208 REMARK 3 6 1.7554 - 1.6519 1.00 1649 158 0.1992 0.1916 REMARK 3 7 1.6519 - 1.5692 1.00 1683 100 0.2431 0.2531 REMARK 3 8 1.5692 - 1.5010 0.91 1502 145 0.2960 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.98 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M5B COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015565. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 16.7 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL41XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14247 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 41.118 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 14.32 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.3700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.55 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.730 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12.5% POLYETHYLENE GLYCOL MONOMETHYL REMARK 280 ETHER 550, 2.5 MM MAGNESIUM CHLORIDE HEXAHYDRATE, 25 MM HEPES REMARK 280 SODIUM, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 25555 X+1/2,Y+1/2,Z+1/2 REMARK 290 26555 -X,-Y+1/2,Z REMARK 290 27555 -X+1/2,Y,-Z REMARK 290 28555 X,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X+1/2,Y+1/2 REMARK 290 30555 Z,-X,-Y+1/2 REMARK 290 31555 -Z,-X+1/2,Y REMARK 290 32555 -Z+1/2,X,-Y REMARK 290 33555 Y+1/2,Z+1/2,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X REMARK 290 35555 Y,-Z,-X+1/2 REMARK 290 36555 -Y,-Z+1/2,X REMARK 290 37555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 38555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 39555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 40555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 41555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 42555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 43555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 44555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 45555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 46555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 47555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 48555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 41.11750 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 41.11750 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 41.11750 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 41.11750 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 41.11750 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 37 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY2 37 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY3 37 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY1 38 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY2 38 -1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY3 38 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY1 39 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY2 39 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY3 39 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY1 40 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY2 40 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY3 40 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY1 41 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY2 41 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY3 41 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY1 42 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY2 42 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY3 42 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY1 43 -1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY2 43 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY3 43 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY1 44 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY2 44 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY3 44 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY1 45 0.000000 0.000000 1.000000 20.55875 REMARK 290 SMTRY2 45 0.000000 1.000000 0.000000 61.67625 REMARK 290 SMTRY3 45 -1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY1 46 0.000000 0.000000 1.000000 61.67625 REMARK 290 SMTRY2 46 0.000000 -1.000000 0.000000 61.67625 REMARK 290 SMTRY3 46 1.000000 0.000000 0.000000 20.55875 REMARK 290 SMTRY1 47 0.000000 0.000000 -1.000000 61.67625 REMARK 290 SMTRY2 47 0.000000 1.000000 0.000000 20.55875 REMARK 290 SMTRY3 47 1.000000 0.000000 0.000000 61.67625 REMARK 290 SMTRY1 48 0.000000 0.000000 -1.000000 20.55875 REMARK 290 SMTRY2 48 0.000000 -1.000000 0.000000 20.55875 REMARK 290 SMTRY3 48 -1.000000 0.000000 0.000000 20.55875 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 3810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.11750 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 201 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 202 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 223 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 239 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 C22 S7E A 101 N22 S7E A 101 28555 1.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 103 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 S7E A 101 O4 REMARK 620 2 S7E A 101 O5 71.5 REMARK 620 3 HOH A 237 O 103.4 174.6 REMARK 620 4 HOH A 238 O 95.0 124.8 53.1 REMARK 620 5 HOH A 241 O 162.7 94.2 90.6 85.2 REMARK 620 6 HOH A 242 O 106.0 105.2 77.5 129.7 86.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 102 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 208 O REMARK 620 2 HOH A 210 O 91.8 REMARK 620 3 HOH A 217 O 88.8 86.8 REMARK 620 4 HOH A 220 O 175.6 90.2 87.4 REMARK 620 5 HOH A 228 O 93.9 173.8 95.7 84.3 REMARK 620 6 HOH A 245 O 90.3 90.9 177.5 93.7 86.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue S7E A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 104 DBREF 6M5B A 1 10 PDB 6M5B 6M5B 1 10 SEQRES 1 A 10 DC CBR DA DG DG DC DC DT DG DG HET CBR A 2 20 HET S7E A 101 43 HET MG A 102 1 HET NA A 103 1 HET EDO A 104 4 HETNAM CBR 5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM S7E 4-[[4-[(4-AZANYL-1-METHYL-PYRROL-2-YL)CARBONYLAMINO]-1- HETNAM 2 S7E METHYL-PYRROL-2-YL]CARBONYLAMINO]-~{N}-[2-[[(3~{S})-3- HETNAM 3 S7E AZANYL-4-OXIDANYLIDENE-BUTYL]CARBAMOYL]-1-METHYL- HETNAM 4 S7E IMIDAZOL-4-YL]-1-METHYL-IMIDAZOLE-2-CARBOXAMIDE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 CBR C9 H13 BR N3 O7 P FORMUL 2 S7E C26 H32 N12 O5 FORMUL 3 MG MG 2+ FORMUL 4 NA NA 1+ FORMUL 5 EDO C2 H6 O2 FORMUL 6 HOH *46(H2 O) LINK O3' DC A 1 P CBR A 2 1555 1555 1.61 LINK O3' CBR A 2 P DA A 3 1555 1555 1.60 LINK O4 S7E A 101 NA NA A 103 1555 1555 2.44 LINK O5 S7E A 101 NA NA A 103 1555 1555 2.81 LINK MG MG A 102 O HOH A 208 1555 48555 2.10 LINK MG MG A 102 O HOH A 210 1555 1555 2.09 LINK MG MG A 102 O HOH A 217 1555 1555 2.15 LINK MG MG A 102 O HOH A 220 1555 1555 2.14 LINK MG MG A 102 O HOH A 228 1555 48555 2.08 LINK MG MG A 102 O HOH A 245 1555 9555 2.02 LINK NA NA A 103 O HOH A 237 1555 30555 2.65 LINK NA NA A 103 O HOH A 238 1555 28555 2.48 LINK NA NA A 103 O HOH A 241 1555 1555 2.39 LINK NA NA A 103 O HOH A 242 1555 1555 2.52 SITE 1 AC1 12 DC A 1 DG A 4 DG A 5 DC A 6 SITE 2 AC1 12 DC A 7 DT A 8 DG A 9 NA A 103 SITE 3 AC1 12 EDO A 104 HOH A 215 HOH A 216 HOH A 233 SITE 1 AC2 6 HOH A 208 HOH A 210 HOH A 217 HOH A 220 SITE 2 AC2 6 HOH A 228 HOH A 245 SITE 1 AC3 5 S7E A 101 HOH A 237 HOH A 238 HOH A 241 SITE 2 AC3 5 HOH A 242 SITE 1 AC4 4 DG A 10 S7E A 101 HOH A 202 HOH A 219 CRYST1 82.235 82.235 82.235 90.00 90.00 90.00 I 41 3 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012160 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012160 0.00000