HEADER SUGAR BINDING PROTEIN 11-MAR-20 6M5M TITLE SPL-1 - GLCNAC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLGLUCOSAMINE-SPECIFIC LECTIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPL-A; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: N-ACETYLGLUCOSAMINE-SPECIFIC LECTIN; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: SPL-B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SAXIDOMUS PURPURATUS; SOURCE 3 ORGANISM_TAXID: 311201; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: SAXIDOMUS PURPURATUS; SOURCE 6 ORGANISM_TAXID: 311201 KEYWDS LECTIN, GLCNAC, SPL-1, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.UNNO,T.HATAKEYAMA REVDAT 4 29-NOV-23 6M5M 1 HETSYN REVDAT 3 29-JUL-20 6M5M 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 08-JUL-20 6M5M 1 JRNL REVDAT 1 10-JUN-20 6M5M 0 JRNL AUTH H.UNNO,S.HIGUCHI,S.GODA,T.HATAKEYAMA JRNL TITL NOVEL CARBOHYDRATE-RECOGNITION MODE OF THE INVERTEBRATE JRNL TITL 2 C-TYPE LECTIN SPL-1 FROM SAXIDOMUS PURPURATUS REVEALED BY JRNL TITL 3 THE GLCNAC-COMPLEX CRYSTAL IN THE PRESENCE OF CA2. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 76 271 2020 JRNL REFN ESSN 2053-230X JRNL PMID 32510468 JRNL DOI 10.1107/S2053230X20007256 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.23 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35272 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1782 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 115 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2193 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.106 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.097 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2304 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1823 ; 0.038 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3136 ; 1.928 ; 1.647 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4271 ; 2.585 ; 1.606 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 271 ; 7.413 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.110 ;24.074 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;13.445 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;14.672 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2644 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 534 ; 0.017 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M5M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016119. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37198 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 43.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.80 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.91000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6A7T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10MM CACL2, 10MM GLCNAC, 28% PEG 8000, REMARK 280 0.1M TRIS-HCL (PH8.5), 0.2M SODIUM ACETATE, 10% GLYCEROL, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 202.40867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.20433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 151.80650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 50.60217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 253.01083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -48.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 LEU A -19 REMARK 465 ASN A -18 REMARK 465 GLY A -17 REMARK 465 PRO A -16 REMARK 465 SER A -15 REMARK 465 ILE A -14 REMARK 465 ILE A -13 REMARK 465 ILE A -12 REMARK 465 SER A -11 REMARK 465 LEU A -10 REMARK 465 PHE A -9 REMARK 465 PHE A -8 REMARK 465 CYS A -7 REMARK 465 PHE A -6 REMARK 465 VAL A -5 REMARK 465 SER A -4 REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 TYR A -1 REMARK 465 ALA A 0 REMARK 465 GLU A 137 REMARK 465 MET B -20 REMARK 465 LEU B -19 REMARK 465 ASN B -18 REMARK 465 GLY B -17 REMARK 465 ALA B -16 REMARK 465 SER B -15 REMARK 465 ILE B -14 REMARK 465 ILE B -13 REMARK 465 VAL B -12 REMARK 465 SER B -11 REMARK 465 LEU B -10 REMARK 465 PHE B -9 REMARK 465 LEU B -8 REMARK 465 CYS B -7 REMARK 465 PHE B -6 REMARK 465 VAL B -5 REMARK 465 GLY B -4 REMARK 465 GLY B -3 REMARK 465 ALA B -2 REMARK 465 TYR B -1 REMARK 465 ALA B 0 REMARK 465 ASP B 138 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 95 36.58 76.52 REMARK 500 LYS A 110 -119.94 52.59 REMARK 500 THR B 89 -74.13 -103.56 REMARK 500 LYS B 111 -120.88 46.00 REMARK 500 VAL B 114 74.60 -115.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 43 O REMARK 620 2 GLU A 45 OE1 80.7 REMARK 620 3 GLU A 49 OE1 85.6 128.7 REMARK 620 4 GLU A 49 OE2 75.4 76.8 51.8 REMARK 620 5 GLU A 132 OE1 78.6 134.5 89.6 134.4 REMARK 620 6 GLU A 132 OE2 122.5 153.2 71.0 119.4 50.6 REMARK 620 7 HOH A 310 O 136.6 72.9 84.7 65.5 143.4 93.8 REMARK 620 8 HOH A 355 O 113.6 84.8 144.9 158.1 67.5 73.9 97.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD1 REMARK 620 2 ASP A 118 O 122.9 REMARK 620 3 ASP A 118 OD2 72.4 79.9 REMARK 620 4 GLN A 120 OE1 121.6 103.0 83.5 REMARK 620 5 HOH A 312 O 66.0 169.3 109.8 74.3 REMARK 620 6 HOH A 328 O 79.4 70.4 117.1 155.6 107.6 REMARK 620 7 HOH A 351 O 138.0 82.7 149.3 76.0 86.5 79.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 44 O REMARK 620 2 GLU B 46 OE1 81.4 REMARK 620 3 GLU B 50 OE1 76.6 70.2 REMARK 620 4 GLU B 50 OE2 85.2 117.6 47.4 REMARK 620 5 GLU B 133 OE1 74.9 133.8 137.7 99.4 REMARK 620 6 GLU B 133 OE2 121.5 150.2 130.0 85.4 50.2 REMARK 620 7 HOH B 338 O 105.1 75.6 145.2 164.8 73.2 79.7 REMARK 620 8 HOH B 352 O 154.7 79.1 81.8 89.7 130.3 82.6 85.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 203 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 99 OD2 REMARK 620 2 ASN B 118 OD1 95.7 REMARK 620 3 ASP B 119 O 154.0 97.3 REMARK 620 4 ASP B 119 OD1 86.7 93.6 70.1 REMARK 620 5 HOH B 350 O 87.9 135.2 98.4 131.2 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6A7T RELATED DB: PDB REMARK 900 SAME PROTEIN DBREF1 6M5M A -20 137 UNP A0A2Z6G7U6_9BIVA DBREF2 6M5M A A0A2Z6G7U6 1 158 DBREF1 6M5M B -20 138 UNP A0A2Z6G7U3_9BIVA DBREF2 6M5M B A0A2Z6G7U3 1 159 SEQRES 1 A 158 MET LEU ASN GLY PRO SER ILE ILE ILE SER LEU PHE PHE SEQRES 2 A 158 CYS PHE VAL SER GLY ALA TYR ALA CYS CYS LYS CYS ASP SEQRES 3 A 158 CYS GLN SER GLY TRP GLU TRP PHE GLY GLY SER CYS TYR SEQRES 4 A 158 LEU PHE ASP GLU THR GLU ARG GLY TRP GLU ASP SER LYS SEQRES 5 A 158 THR PHE CYS GLU SER GLN ASN ALA ALA LEU VAL THR VAL SEQRES 6 A 158 GLU SER SER GLU GLU ASP ASP PHE ILE ARG GLY VAL ILE SEQRES 7 A 158 SER ALA GLN SER ALA PHE HIS TYR TYR TRP ILE GLY GLY SEQRES 8 A 158 SER TRP ASP ALA GLU HIS SER GLU TYR ARG TRP ILE ASP SEQRES 9 A 158 GLY SER SER ILE SER PHE ASN GLY TRP GLY PRO ASN ARG SEQRES 10 A 158 PRO ASP ALA ASP GLU GLY CYS MET ASP TYR LEU ASN TYR SEQRES 11 A 158 LYS GLU ILE VAL TRP GLN TRP ASN ASP HIS GLN ASP CYS SEQRES 12 A 158 VAL ASN THR LYS GLY PRO SER ILE CYS GLU THR ASP CYS SEQRES 13 A 158 SER GLU SEQRES 1 B 159 MET LEU ASN GLY ALA SER ILE ILE VAL SER LEU PHE LEU SEQRES 2 B 159 CYS PHE VAL GLY GLY ALA TYR ALA CYS CYS SER GLU ASP SEQRES 3 B 159 ASP CYS PRO SER GLY TRP LYS PHE PHE GLY GLY SER CYS SEQRES 4 B 159 TYR LEU PHE ASP GLU GLY SER ARG GLY TRP GLU GLY SER SEQRES 5 B 159 LYS ALA PHE CYS GLU SER LYS ASP ALA SER LEU VAL THR SEQRES 6 B 159 VAL GLU CYS SER LYS GLU ASP ASP PHE ILE ARG GLY ILE SEQRES 7 B 159 LEU SER GLY GLN THR ALA LYS HIS TYR TYR TRP ILE GLY SEQRES 8 B 159 ALA ARG TRP ASN GLU GLU HIS ASN ASP TYR ARG TRP ILE SEQRES 9 B 159 ASP GLY SER PRO PHE THR PHE ILE GLY TRP GLY PRO GLY SEQRES 10 B 159 LYS PRO ASP ASN ASN LYS GLY CYS LEU ASP TYR LEU ASN SEQRES 11 B 159 TYR LYS GLU VAL VAL TRP GLN TRP ASN ASP HIS VAL ASP SEQRES 12 B 159 CYS GLU ASN THR ASN GLY PRO CYS ILE CYS GLU ILE ASP SEQRES 13 B 159 CYS SER ASP HET CA A 201 1 HET NAG A 202 15 HET CA A 203 1 HET CA B 201 1 HET NAG B 202 15 HET CA B 203 1 HETNAM CA CALCIUM ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 CA 4(CA 2+) FORMUL 4 NAG 2(C8 H15 N O6) FORMUL 9 HOH *139(H2 O) HELIX 1 AA1 GLY A 26 GLN A 37 1 12 HELIX 2 AA2 SER A 46 SER A 58 1 13 HELIX 3 AA3 SER B 3 CYS B 7 5 5 HELIX 4 AA4 GLY B 27 LYS B 38 1 12 HELIX 5 AA5 CYS B 47 SER B 59 1 13 SHEET 1 AA1 4 GLU A 11 PHE A 13 0 SHEET 2 AA1 4 SER A 16 ARG A 25 -1 O SER A 16 N PHE A 13 SHEET 3 AA1 4 GLY A 127 THR A 133 -1 O GLY A 127 N ARG A 25 SHEET 4 AA1 4 ALA A 40 LEU A 41 -1 N ALA A 40 O GLU A 132 SHEET 1 AA2 4 GLU A 78 TRP A 81 0 SHEET 2 AA2 4 TYR A 65 ASP A 73 -1 N ASP A 73 O GLU A 78 SHEET 3 AA2 4 CYS A 103 TYR A 109 -1 O TYR A 106 N TYR A 66 SHEET 4 AA2 4 ILE A 112 HIS A 119 -1 O HIS A 119 N CYS A 103 SHEET 1 AA3 4 LYS B 12 PHE B 14 0 SHEET 2 AA3 4 SER B 17 ARG B 26 -1 O SER B 17 N PHE B 14 SHEET 3 AA3 4 GLY B 128 ILE B 134 -1 O ILE B 134 N CYS B 18 SHEET 4 AA3 4 SER B 41 LEU B 42 -1 N SER B 41 O GLU B 133 SHEET 1 AA4 4 ASP B 79 TRP B 82 0 SHEET 2 AA4 4 TYR B 66 ASN B 74 -1 N ASN B 74 O ASP B 79 SHEET 3 AA4 4 CYS B 104 TYR B 110 -1 O LEU B 105 N ALA B 71 SHEET 4 AA4 4 VAL B 113 HIS B 120 -1 O HIS B 120 N CYS B 104 SSBOND 1 CYS A 1 CYS A 135 1555 1555 2.05 SSBOND 2 CYS A 2 CYS B 47 1555 1555 2.13 SSBOND 3 CYS A 4 CYS B 1 1555 1555 2.08 SSBOND 4 CYS A 6 CYS A 17 1555 1555 2.07 SSBOND 5 CYS A 34 CYS A 131 1555 1555 2.16 SSBOND 6 CYS A 103 CYS A 122 1555 1555 2.18 SSBOND 7 CYS B 2 CYS B 136 1555 1555 2.07 SSBOND 8 CYS B 7 CYS B 18 1555 1555 2.10 SSBOND 9 CYS B 35 CYS B 132 1555 1555 2.09 SSBOND 10 CYS B 104 CYS B 123 1555 1555 2.10 LINK O THR A 43 CA CA A 201 1555 1555 2.35 LINK OE1 GLU A 45 CA CA A 201 1555 1555 2.53 LINK OE1 GLU A 49 CA CA A 201 1555 1555 2.37 LINK OE2 GLU A 49 CA CA A 201 1555 1555 2.57 LINK OD1 ASP A 98 CA CA A 203 1555 1555 2.47 LINK O ASP A 118 CA CA A 203 1555 1555 2.30 LINK OD2 ASP A 118 CA CA A 203 1555 1555 2.41 LINK OE1 GLN A 120 CA CA A 203 1555 1555 2.37 LINK OE1 GLU A 132 CA CA A 201 1555 1555 2.69 LINK OE2 GLU A 132 CA CA A 201 1555 1555 2.49 LINK CA CA A 201 O HOH A 310 1555 1555 2.09 LINK CA CA A 201 O HOH A 355 1555 1555 2.68 LINK CA CA A 203 O HOH A 312 1555 1555 2.22 LINK CA CA A 203 O HOH A 328 1555 1555 2.42 LINK CA CA A 203 O HOH A 351 1555 1555 2.44 LINK O THR B 44 CA CA B 201 1555 1555 2.30 LINK OE1 GLU B 46 CA CA B 201 1555 1555 2.40 LINK OE1 GLU B 50 CA CA B 201 1555 1555 2.99 LINK OE2 GLU B 50 CA CA B 201 1555 1555 2.19 LINK OD2 ASP B 99 CA CA B 203 1555 1555 2.30 LINK OD1 ASN B 118 CA CA B 203 1555 1555 2.47 LINK O ASP B 119 CA CA B 203 1555 1555 2.10 LINK OD1 ASP B 119 CA CA B 203 1555 1555 3.04 LINK OE1 GLU B 133 CA CA B 201 1555 1555 2.86 LINK OE2 GLU B 133 CA CA B 201 1555 1555 2.36 LINK CA CA B 201 O HOH B 338 1555 1555 2.36 LINK CA CA B 201 O HOH B 352 1555 1555 2.31 LINK CA CA B 203 O HOH B 350 1555 1555 2.42 CISPEP 1 ARG A 96 PRO A 97 0 6.13 CISPEP 2 LYS B 97 PRO B 98 0 3.31 CRYST1 44.460 44.460 303.613 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022492 0.012986 0.000000 0.00000 SCALE2 0.000000 0.025972 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003294 0.00000