HEADER VIRAL PROTEIN 11-MAR-20 6M5V TITLE THE COORDINATE OF THE HEXAMERIC TERMINASE COMPLEX IN THE PRESENCE OF TITLE 2 THE ADP-BEF3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE TERMINASE SUBUNIT 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TERMINASE LARGE SUBUNIT; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TRIPARTITE TERMINASE SUBUNIT 1; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TRIPARTITE TERMINASE SUBUNIT 2; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN 17; SOURCE 3 ORGANISM_COMMON: HHV-1; SOURCE 4 ORGANISM_TAXID: 10299; SOURCE 5 STRAIN: 17; SOURCE 6 GENE: TRM3, UL15; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN 17; SOURCE 11 ORGANISM_COMMON: HHV-1; SOURCE 12 ORGANISM_TAXID: 10299; SOURCE 13 STRAIN: 17; SOURCE 14 GENE: TRM1, UL28; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HUMAN ALPHAHERPESVIRUS 1 STRAIN 17; SOURCE 19 ORGANISM_COMMON: HHV-1; SOURCE 20 ORGANISM_TAXID: 10299; SOURCE 21 STRAIN: 17; SOURCE 22 GENE: UL33, TRM2; SOURCE 23 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 24 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR Y.X.YANG,P.YANG,N.WANG,Z.H.CHEN,Z.H.ZHOU,Z.H.RAO,X.X.WANG REVDAT 2 27-MAR-24 6M5V 1 REMARK REVDAT 1 28-OCT-20 6M5V 0 JRNL AUTH Y.YANG,P.YANG,N.WANG,Z.CHEN,D.SU,Z.H.ZHOU,Z.RAO,X.WANG JRNL TITL ARCHITECTURE OF THE HERPESVIRUS GENOME-PACKAGING COMPLEX AND JRNL TITL 2 IMPLICATIONS FOR DNA TRANSLOCATION. JRNL REF PROTEIN CELL V. 11 339 2020 JRNL REFN ESSN 1674-8018 JRNL PMID 32328903 JRNL DOI 10.1007/S13238-020-00710-0 REMARK 2 REMARK 2 RESOLUTION. 4.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.500 REMARK 3 NUMBER OF PARTICLES : 7841 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6M5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300011069. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : HSV-1 TERMINASE COMPLEX IN REMARK 245 PRESENCE OF ADP-BEF3 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 QUANTUM (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 200.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 177 REMARK 465 GLU A 178 REMARK 465 THR A 179 REMARK 465 THR A 180 REMARK 465 GLY A 181 REMARK 465 PRO A 182 REMARK 465 PRO A 183 REMARK 465 LYS A 184 REMARK 465 LYS A 185 REMARK 465 ARG A 186 REMARK 465 ALA A 187 REMARK 465 LYS A 188 REMARK 465 VAL A 189 REMARK 465 ASP A 190 REMARK 465 VAL A 191 REMARK 465 ALA A 192 REMARK 465 THR A 193 REMARK 465 HIS A 194 REMARK 465 GLY A 195 REMARK 465 ARG A 196 REMARK 465 LYS A 292 REMARK 465 ALA A 293 REMARK 465 ASN A 341 REMARK 465 THR A 342 REMARK 465 ASN A 343 REMARK 465 GLY A 344 REMARK 465 ILE A 345 REMARK 465 ARG A 346 REMARK 465 GLY A 347 REMARK 465 TYR A 433 REMARK 465 ILE A 434 REMARK 465 LEU A 435 REMARK 465 ASN A 436 REMARK 465 LYS A 437 REMARK 465 PRO A 438 REMARK 465 VAL A 439 REMARK 465 PHE A 440 REMARK 465 ILE A 441 REMARK 465 THR A 442 REMARK 465 MET A 443 REMARK 465 ASP A 444 REMARK 465 GLY A 445 REMARK 465 ALA A 446 REMARK 465 VAL A 447 REMARK 465 ARG A 448 REMARK 465 ARG A 449 REMARK 465 THR A 450 REMARK 465 ALA A 451 REMARK 465 ASP A 452 REMARK 465 LEU A 453 REMARK 465 PHE A 454 REMARK 465 LEU A 455 REMARK 465 ALA A 456 REMARK 465 ASP A 457 REMARK 465 SER A 458 REMARK 465 PHE A 459 REMARK 465 MET A 460 REMARK 465 GLN A 461 REMARK 465 GLU A 462 REMARK 465 ILE A 463 REMARK 465 ILE A 464 REMARK 465 GLY A 465 REMARK 465 GLY A 466 REMARK 465 GLN A 467 REMARK 465 ALA A 468 REMARK 465 ARG A 469 REMARK 465 GLU A 470 REMARK 465 THR A 471 REMARK 465 GLY A 472 REMARK 465 ASP A 473 REMARK 465 ASP A 474 REMARK 465 ARG A 475 REMARK 465 LEU A 603 REMARK 465 LEU A 604 REMARK 465 ALA A 605 REMARK 465 SER A 606 REMARK 465 GLU A 607 REMARK 465 GLY A 608 REMARK 465 ALA A 609 REMARK 465 ASP A 610 REMARK 465 ALA A 611 REMARK 465 GLY A 612 REMARK 465 SER A 613 REMARK 465 GLU A 686 REMARK 465 THR A 687 REMARK 465 VAL A 688 REMARK 465 SER A 689 REMARK 465 PRO A 690 REMARK 465 ASN A 691 REMARK 465 THR A 692 REMARK 465 ASP A 693 REMARK 465 VAL A 694 REMARK 465 ARG A 695 REMARK 465 THR A 696 REMARK 465 TYR A 697 REMARK 465 SER A 698 REMARK 465 GLY A 699 REMARK 465 LYS A 700 REMARK 465 ARG A 701 REMARK 465 ASN A 702 REMARK 465 GLY A 703 REMARK 465 ALA A 704 REMARK 465 ALA A 720 REMARK 465 GLN A 721 REMARK 465 ALA A 722 REMARK 465 ARG B 267 REMARK 465 THR B 268 REMARK 465 ALA B 269 REMARK 465 GLY B 270 REMARK 465 GLY B 271 REMARK 465 ASP B 272 REMARK 465 GLY B 273 REMARK 465 GLN B 274 REMARK 465 PRO B 275 REMARK 465 HIS B 276 REMARK 465 PRO B 277 REMARK 465 SER B 278 REMARK 465 PRO B 279 REMARK 465 GLU B 280 REMARK 465 ASN B 281 REMARK 465 ASP B 282 REMARK 465 SER B 283 REMARK 465 VAL B 284 REMARK 465 ARG B 285 REMARK 465 LYS B 286 REMARK 465 GLU B 287 REMARK 465 ALA B 288 REMARK 465 ASP B 289 REMARK 465 ALA B 290 REMARK 465 LEU B 291 REMARK 465 LEU B 292 REMARK 465 GLU B 293 REMARK 465 ALA B 294 REMARK 465 HIS B 295 REMARK 465 ASP B 296 REMARK 465 VAL B 297 REMARK 465 PHE B 298 REMARK 465 GLN B 299 REMARK 465 ALA B 300 REMARK 465 THR B 301 REMARK 465 THR B 302 REMARK 465 PRO B 303 REMARK 465 GLY B 304 REMARK 465 LEU B 305 REMARK 465 LEU B 404 REMARK 465 THR B 405 REMARK 465 THR B 406 REMARK 465 MET B 430 REMARK 465 GLY B 431 REMARK 465 ALA B 432 REMARK 465 GLY B 433 REMARK 465 GLY B 434 REMARK 465 ALA B 435 REMARK 465 ALA B 436 REMARK 465 ASP B 437 REMARK 465 ALA B 438 REMARK 465 PRO B 439 REMARK 465 LYS B 440 REMARK 465 GLY B 441 REMARK 465 GLY B 442 REMARK 465 ALA B 443 REMARK 465 GLY B 444 REMARK 465 PRO B 445 REMARK 465 ASP B 446 REMARK 465 ASP B 447 REMARK 465 ASP B 448 REMARK 465 GLY B 449 REMARK 465 ASP B 450 REMARK 465 ARG B 451 REMARK 465 VAL B 452 REMARK 465 ALA B 453 REMARK 465 VAL B 454 REMARK 465 GLU B 455 REMARK 465 GLU B 456 REMARK 465 GLY B 457 REMARK 465 ALA B 458 REMARK 465 ARG B 459 REMARK 465 GLY B 460 REMARK 465 LEU B 461 REMARK 465 GLY B 462 REMARK 465 ALA B 463 REMARK 465 PRO B 464 REMARK 465 GLY B 465 REMARK 465 GLY B 466 REMARK 465 GLY B 467 REMARK 465 GLY B 468 REMARK 465 GLU B 469 REMARK 465 ASP B 470 REMARK 465 GLU B 471 REMARK 465 ASP B 472 REMARK 465 ARG B 473 REMARK 465 ARG B 474 REMARK 465 ARG B 475 REMARK 465 GLY B 476 REMARK 465 PRO B 477 REMARK 465 GLY B 478 REMARK 465 GLY B 479 REMARK 465 GLN B 480 REMARK 465 GLY B 481 REMARK 465 PRO B 482 REMARK 465 GLU B 483 REMARK 465 THR B 484 REMARK 465 ALA B 651 REMARK 465 GLY B 652 REMARK 465 GLY B 653 REMARK 465 SER B 654 REMARK 465 GLY C 83 REMARK 465 PRO C 84 REMARK 465 ILE C 85 REMARK 465 LYS C 86 REMARK 465 ALA C 87 REMARK 465 PRO C 88 REMARK 465 ASP C 89 REMARK 465 ASP C 90 REMARK 465 ALA C 91 REMARK 465 ALA C 92 REMARK 465 ALA C 93 REMARK 465 PRO C 94 REMARK 465 GLN C 95 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 71 CG CD OE1 OE2 REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 223 CG OD1 OD2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 291 CG CD NE CZ NH1 NH2 REMARK 470 THR A 294 OG1 CG2 REMARK 470 GLU A 295 CG CD OE1 OE2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 ARG A 306 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 315 CG OD1 OD2 REMARK 470 HIS A 340 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 348 CG CD OE1 NE2 REMARK 470 ASP A 349 CG OD1 OD2 REMARK 470 GLU A 405 CG CD OE1 OE2 REMARK 470 GLU A 484 CG CD OE1 OE2 REMARK 470 ASN A 496 CG OD1 ND2 REMARK 470 LEU A 499 CG CD1 CD2 REMARK 470 TYR A 529 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 532 CG OD1 OD2 REMARK 470 THR A 563 OG1 CG2 REMARK 470 GLN A 564 CG CD OE1 NE2 REMARK 470 GLU A 661 CG CD OE1 OE2 REMARK 470 ARG A 668 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 253 CG OD1 OD2 REMARK 470 LEU B 315 CG CD1 CD2 REMARK 470 ASP B 487 CG OD1 OD2 REMARK 470 ILE B 488 CG1 CG2 CD1 REMARK 470 ASP B 746 CG OD1 OD2 REMARK 470 ARG B 752 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 758 CG OD1 OD2 REMARK 470 ARG C 23 CG CD NE CZ NH1 NH2 REMARK 470 SER C 24 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 46 76.06 59.21 REMARK 500 GLU A 124 -9.08 71.59 REMARK 500 GLU A 320 -159.44 -146.77 REMARK 500 ASN A 351 -10.17 72.82 REMARK 500 LEU A 352 -57.12 -125.71 REMARK 500 PHE A 354 93.11 -69.87 REMARK 500 ASP A 364 -4.35 68.20 REMARK 500 PHE A 382 53.84 -92.00 REMARK 500 THR A 388 -5.17 69.22 REMARK 500 CYS A 414 -162.05 -78.49 REMARK 500 MET A 418 65.33 -150.29 REMARK 500 ARG A 530 -125.37 46.19 REMARK 500 ASN A 637 -91.05 -142.29 REMARK 500 VAL A 667 43.00 -105.28 REMARK 500 GLN A 670 -35.46 -164.40 REMARK 500 ARG B 58 44.15 -87.83 REMARK 500 LEU B 73 155.57 -49.67 REMARK 500 ALA B 102 -6.28 74.97 REMARK 500 CYS B 121 74.18 52.70 REMARK 500 VAL B 127 -55.66 -120.01 REMARK 500 ASP B 130 64.11 61.18 REMARK 500 CYS B 156 49.13 -85.75 REMARK 500 VAL B 186 76.21 41.57 REMARK 500 CYS B 223 -18.19 73.91 REMARK 500 ASN B 224 15.78 41.23 REMARK 500 ALA B 230 -8.35 71.48 REMARK 500 HIS B 245 41.47 -103.34 REMARK 500 THR B 386 -168.71 -103.06 REMARK 500 LYS B 509 -61.11 -95.53 REMARK 500 HIS B 535 -177.38 175.85 REMARK 500 ALA B 563 -5.60 72.05 REMARK 500 ASP B 592 76.34 53.61 REMARK 500 PRO B 593 -5.62 -55.83 REMARK 500 ASP B 613 -70.32 -75.33 REMARK 500 HIS B 614 8.84 52.92 REMARK 500 SER B 618 -8.78 71.68 REMARK 500 ARG B 646 32.11 -95.17 REMARK 500 ASP B 657 -5.47 72.80 REMARK 500 TYR B 667 73.15 -101.16 REMARK 500 GLU B 706 -6.85 68.16 REMARK 500 SER B 713 64.01 65.14 REMARK 500 THR B 730 -12.08 66.93 REMARK 500 TYR B 731 19.60 52.01 REMARK 500 CYS B 735 68.99 -159.89 REMARK 500 SER B 743 -62.07 -95.28 REMARK 500 ASP B 758 144.56 -170.92 REMARK 500 PRO C 18 39.95 -86.22 REMARK 500 LEU C 22 -168.70 -165.36 REMARK 500 GLN C 25 70.08 50.55 REMARK 500 THR C 26 139.15 -39.54 REMARK 500 REMARK 500 THIS ENTRY HAS 54 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 801 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 121 SG REMARK 620 2 CYS C 101 SG 85.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 802 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 197 SG REMARK 620 2 CYS B 200 SG 93.0 REMARK 620 3 CYS B 223 O 132.5 99.4 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30094 RELATED DB: EMDB REMARK 900 THE COORDINATE OF THE HEXAMERIC TERMINASE COMPLEX IN THE PRESENCE REMARK 900 OF THE ADP-BEF3 DBREF 6M5V A 38 727 UNP P04295 TRM3_HHV11 38 727 DBREF 6M5V B 2 772 UNP P10212 TRM1_HHV11 2 772 DBREF 6M5V C 13 129 UNP B9VQG1 B9VQG1_HHV11 13 129 SEQADV 6M5V SER B 216 UNP P10212 ARG 216 ENGINEERED MUTATION SEQADV 6M5V GLN B 312 UNP P10212 ARG 312 ENGINEERED MUTATION SEQRES 1 A 690 GLY ASP ALA LEU ARG VAL PRO PHE LEU ASP PHE ALA THR SEQRES 2 A 690 ALA THR PRO LYS ARG HIS GLN THR VAL VAL PRO GLY VAL SEQRES 3 A 690 GLY THR LEU HIS ASP CYS CYS GLU HIS SER PRO LEU PHE SEQRES 4 A 690 SER ALA VAL ALA ARG ARG LEU LEU PHE ASN SER LEU VAL SEQRES 5 A 690 PRO ALA GLN LEU LYS GLY ARG ASP PHE GLY GLY ASP HIS SEQRES 6 A 690 THR ALA LYS LEU GLU PHE LEU ALA PRO GLU LEU VAL ARG SEQRES 7 A 690 ALA VAL ALA ARG LEU ARG PHE LYS GLU CYS ALA PRO ALA SEQRES 8 A 690 ASP VAL VAL PRO GLN ARG ASN ALA TYR TYR SER VAL LEU SEQRES 9 A 690 ASN THR PHE GLN ALA LEU HIS ARG SER GLU ALA PHE ARG SEQRES 10 A 690 GLN LEU VAL HIS PHE VAL ARG ASP PHE ALA GLN LEU LEU SEQRES 11 A 690 LYS THR SER PHE ARG ALA SER SER LEU THR GLU THR THR SEQRES 12 A 690 GLY PRO PRO LYS LYS ARG ALA LYS VAL ASP VAL ALA THR SEQRES 13 A 690 HIS GLY ARG THR TYR GLY THR LEU GLU LEU PHE GLN LYS SEQRES 14 A 690 MET ILE LEU MET HIS ALA THR TYR PHE LEU ALA ALA VAL SEQRES 15 A 690 LEU LEU GLY ASP HIS ALA GLU GLN VAL ASN THR PHE LEU SEQRES 16 A 690 ARG LEU VAL PHE GLU ILE PRO LEU PHE SER ASP ALA ALA SEQRES 17 A 690 VAL ARG HIS PHE ARG GLN ARG ALA THR VAL PHE LEU VAL SEQRES 18 A 690 PRO ARG ARG HIS GLY LYS THR TRP PHE LEU VAL PRO LEU SEQRES 19 A 690 ILE ALA LEU SER LEU ALA SER PHE ARG GLY ILE LYS ILE SEQRES 20 A 690 GLY TYR THR ALA HIS ILE ARG LYS ALA THR GLU PRO VAL SEQRES 21 A 690 PHE GLU GLU ILE ASP ALA CYS LEU ARG GLY TRP PHE GLY SEQRES 22 A 690 SER ALA ARG VAL ASP HIS VAL LYS GLY GLU THR ILE SER SEQRES 23 A 690 PHE SER PHE PRO ASP GLY SER ARG SER THR ILE VAL PHE SEQRES 24 A 690 ALA SER SER HIS ASN THR ASN GLY ILE ARG GLY GLN ASP SEQRES 25 A 690 PHE ASN LEU LEU PHE VAL ASP GLU ALA ASN PHE ILE ARG SEQRES 26 A 690 PRO ASP ALA VAL GLN THR ILE MET GLY PHE LEU ASN GLN SEQRES 27 A 690 ALA ASN CYS LYS ILE ILE PHE VAL SER SER THR ASN THR SEQRES 28 A 690 GLY LYS ALA SER THR SER PHE LEU TYR ASN LEU ARG GLY SEQRES 29 A 690 ALA ALA ASP GLU LEU LEU ASN VAL VAL THR TYR ILE CYS SEQRES 30 A 690 ASP ASP HIS MET PRO ARG VAL VAL THR HIS THR ASN ALA SEQRES 31 A 690 THR ALA CYS SER CYS TYR ILE LEU ASN LYS PRO VAL PHE SEQRES 32 A 690 ILE THR MET ASP GLY ALA VAL ARG ARG THR ALA ASP LEU SEQRES 33 A 690 PHE LEU ALA ASP SER PHE MET GLN GLU ILE ILE GLY GLY SEQRES 34 A 690 GLN ALA ARG GLU THR GLY ASP ASP ARG PRO VAL LEU THR SEQRES 35 A 690 LYS SER ALA GLY GLU ARG PHE LEU LEU TYR ARG PRO SER SEQRES 36 A 690 THR THR THR ASN SER GLY LEU MET ALA PRO ASP LEU TYR SEQRES 37 A 690 VAL TYR VAL ASP PRO ALA PHE THR ALA ASN THR ARG ALA SEQRES 38 A 690 SER GLY THR GLY VAL ALA VAL VAL GLY ARG TYR ARG ASP SEQRES 39 A 690 ASP TYR ILE ILE PHE ALA LEU GLU HIS PHE PHE LEU ARG SEQRES 40 A 690 ALA LEU THR GLY SER ALA PRO ALA ASP ILE ALA ARG CYS SEQRES 41 A 690 VAL VAL HIS SER LEU THR GLN VAL LEU ALA LEU HIS PRO SEQRES 42 A 690 GLY ALA PHE ARG GLY VAL ARG VAL ALA VAL GLU GLY ASN SEQRES 43 A 690 SER SER GLN ASP SER ALA VAL ALA ILE ALA THR HIS VAL SEQRES 44 A 690 HIS THR GLU MET HIS ARG LEU LEU ALA SER GLU GLY ALA SEQRES 45 A 690 ASP ALA GLY SER GLY PRO GLU LEU LEU PHE TYR HIS CYS SEQRES 46 A 690 GLU PRO PRO GLY SER ALA VAL LEU TYR PRO PHE PHE LEU SEQRES 47 A 690 LEU ASN LYS GLN LYS THR PRO ALA PHE GLU HIS PHE ILE SEQRES 48 A 690 LYS LYS PHE ASN SER GLY GLY VAL MET ALA SER GLN GLU SEQRES 49 A 690 ILE VAL SER ALA THR VAL ARG LEU GLN THR ASP PRO VAL SEQRES 50 A 690 GLU TYR LEU LEU GLU GLN LEU ASN ASN LEU THR GLU THR SEQRES 51 A 690 VAL SER PRO ASN THR ASP VAL ARG THR TYR SER GLY LYS SEQRES 52 A 690 ARG ASN GLY ALA SER ASP ASP LEU MET VAL ALA VAL ILE SEQRES 53 A 690 MET ALA ILE TYR LEU ALA ALA GLN ALA GLY PRO PRO HIS SEQRES 54 A 690 THR SEQRES 1 B 771 ALA ALA PRO VAL SER GLU PRO THR VAL ALA ARG GLN LYS SEQRES 2 B 771 LEU LEU ALA LEU LEU GLY GLN VAL GLN THR TYR VAL PHE SEQRES 3 B 771 GLN ILE GLU LEU LEU ARG ARG CYS ASP PRO HIS ILE GLY SEQRES 4 B 771 ARG GLY LYS LEU PRO GLN LEU LYS LEU ASN ALA LEU GLN SEQRES 5 B 771 VAL ARG ALA LEU ARG ARG ARG LEU ARG PRO GLY LEU GLU SEQRES 6 B 771 ALA GLN ALA GLY ALA PHE LEU THR PRO LEU SER VAL THR SEQRES 7 B 771 LEU GLU LEU LEU LEU GLU TYR ALA TRP ARG GLU GLY GLU SEQRES 8 B 771 ARG LEU LEU GLY SER LEU GLU THR PHE ALA THR ALA GLY SEQRES 9 B 771 ASP VAL ALA ALA PHE PHE THR GLU THR MET GLY LEU ALA SEQRES 10 B 771 ARG PRO CYS PRO TYR HIS GLN ARG VAL ARG LEU ASP THR SEQRES 11 B 771 TYR GLY GLY THR VAL HIS MET GLU LEU CYS PHE LEU HIS SEQRES 12 B 771 ASP VAL GLU ASN PHE LEU LYS GLN LEU ASN TYR CYS HIS SEQRES 13 B 771 LEU ILE THR PRO SER ARG GLY ALA THR ALA ALA LEU GLU SEQRES 14 B 771 ARG VAL ARG GLU PHE MET VAL GLY ALA VAL GLY SER GLY SEQRES 15 B 771 LEU ILE VAL PRO PRO GLU LEU SER ASP PRO SER HIS PRO SEQRES 16 B 771 CYS ALA VAL CYS PHE GLU GLU LEU CYS VAL THR ALA ASN SEQRES 17 B 771 GLN GLY ALA THR ILE ALA SER ARG LEU ALA ASP ARG ILE SEQRES 18 B 771 CYS ASN HIS VAL THR GLN GLN ALA GLN VAL ARG LEU ASP SEQRES 19 B 771 ALA ASN GLU LEU ARG ARG TYR LEU PRO HIS ALA ALA GLY SEQRES 20 B 771 LEU SER ASP ALA ASP ARG ALA ARG ALA LEU SER VAL LEU SEQRES 21 B 771 ASP HIS ALA LEU ALA ARG THR ALA GLY GLY ASP GLY GLN SEQRES 22 B 771 PRO HIS PRO SER PRO GLU ASN ASP SER VAL ARG LYS GLU SEQRES 23 B 771 ALA ASP ALA LEU LEU GLU ALA HIS ASP VAL PHE GLN ALA SEQRES 24 B 771 THR THR PRO GLY LEU TYR ALA ILE SER GLU LEU GLN PHE SEQRES 25 B 771 TRP LEU ALA SER GLY ASP ARG ALA GLY GLN THR THR MET SEQRES 26 B 771 ASP ALA PHE ALA SER ASN LEU THR ALA LEU ALA ARG ARG SEQRES 27 B 771 GLU LEU GLN GLN GLU THR ALA ALA VAL ALA VAL GLU LEU SEQRES 28 B 771 ALA LEU PHE GLY ARG ARG ALA GLU HIS PHE ASP ARG ALA SEQRES 29 B 771 PHE GLY SER HIS LEU ALA ALA LEU ASP MET VAL ASP ALA SEQRES 30 B 771 LEU ILE ILE GLY GLY GLN ALA THR SER PRO ASP ASP GLN SEQRES 31 B 771 ILE GLU ALA LEU ILE ARG ALA CYS TYR ASP HIS HIS LEU SEQRES 32 B 771 THR THR PRO LEU LEU ARG ARG LEU VAL SER PRO GLU GLN SEQRES 33 B 771 CYS ASP GLU GLU ALA LEU ARG ARG VAL LEU ALA ARG MET SEQRES 34 B 771 GLY ALA GLY GLY ALA ALA ASP ALA PRO LYS GLY GLY ALA SEQRES 35 B 771 GLY PRO ASP ASP ASP GLY ASP ARG VAL ALA VAL GLU GLU SEQRES 36 B 771 GLY ALA ARG GLY LEU GLY ALA PRO GLY GLY GLY GLY GLU SEQRES 37 B 771 ASP GLU ASP ARG ARG ARG GLY PRO GLY GLY GLN GLY PRO SEQRES 38 B 771 GLU THR TRP GLY ASP ILE ALA THR GLN ALA ALA ALA ASP SEQRES 39 B 771 VAL ARG GLU ARG ARG ARG LEU TYR ALA ASP ARG LEU THR SEQRES 40 B 771 LYS ARG SER LEU ALA SER LEU GLY ARG CYS VAL ARG GLU SEQRES 41 B 771 GLN ARG GLY GLU LEU GLU LYS MET LEU ARG VAL SER VAL SEQRES 42 B 771 HIS GLY GLU VAL LEU PRO ALA THR PHE ALA ALA VAL ALA SEQRES 43 B 771 ASN GLY PHE ALA ALA ARG ALA ARG PHE CYS ALA LEU THR SEQRES 44 B 771 ALA GLY ALA GLY THR VAL ILE ASP ASN ARG SER ALA PRO SEQRES 45 B 771 GLY VAL PHE ASP ALA HIS ARG PHE MET ARG ALA SER LEU SEQRES 46 B 771 LEU ARG HIS GLN VAL ASP PRO ALA LEU LEU PRO SER ILE SEQRES 47 B 771 THR HIS ARG PHE PHE GLU LEU VAL ASN GLY PRO LEU PHE SEQRES 48 B 771 ASP HIS SER THR HIS SER PHE ALA GLN PRO PRO ASN THR SEQRES 49 B 771 ALA LEU TYR TYR SER VAL GLU ASN VAL GLY LEU LEU PRO SEQRES 50 B 771 HIS LEU LYS GLU GLU LEU ALA ARG PHE ILE MET GLY ALA SEQRES 51 B 771 GLY GLY SER GLY ALA ASP TRP ALA VAL SER GLU PHE GLN SEQRES 52 B 771 ARG PHE TYR CYS PHE ASP GLY ILE SER GLY ILE THR PRO SEQRES 53 B 771 THR GLN ARG ALA ALA TRP ARG TYR ILE ARG GLU LEU ILE SEQRES 54 B 771 ILE ALA THR THR LEU PHE ALA SER VAL TYR ARG CYS GLY SEQRES 55 B 771 GLU LEU GLU LEU ARG ARG PRO ASP CYS SER ARG PRO THR SEQRES 56 B 771 SER GLU GLY ARG TYR ARG TYR PRO PRO GLY VAL TYR LEU SEQRES 57 B 771 THR TYR ASP SER ASP CYS PRO LEU VAL ALA ILE VAL GLU SEQRES 58 B 771 SER ALA PRO ASP GLY CYS ILE GLY PRO ARG SER VAL VAL SEQRES 59 B 771 VAL TYR ASP ARG ASP VAL PHE SER ILE LEU TYR SER VAL SEQRES 60 B 771 LEU GLN HIS LEU SEQRES 1 C 117 LEU ARG ASP THR ILE PRO ASP CYS ALA LEU ARG SER GLN SEQRES 2 C 117 THR LEU GLU SER LEU ASP ALA ARG TYR VAL SER ARG ASP SEQRES 3 C 117 GLY ALA HIS ASP ALA ALA VAL TRP PHE GLU ASP MET THR SEQRES 4 C 117 PRO ALA GLU LEU GLU VAL VAL PHE PRO THR THR ASP ALA SEQRES 5 C 117 LYS LEU ASN TYR LEU SER ARG THR GLN ARG LEU ALA SER SEQRES 6 C 117 LEU LEU THR TYR ALA GLY PRO ILE LYS ALA PRO ASP ASP SEQRES 7 C 117 ALA ALA ALA PRO GLN THR PRO ASP THR ALA CYS VAL HIS SEQRES 8 C 117 GLY GLU LEU LEU ALA ARG LYS ARG GLU ARG PHE ALA ALA SEQRES 9 C 117 VAL ILE ASN ARG PHE LEU ASP LEU HIS GLN ILE LEU ARG HET ADP A 801 27 HET BEF A 802 4 HET MG A 803 1 HET ZN B 801 1 HET ZN B 802 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 BEF BE F3 1- FORMUL 6 MG MG 2+ FORMUL 7 ZN 2(ZN 2+) HELIX 1 AA1 HIS A 67 HIS A 72 5 6 HELIX 2 AA2 SER A 73 ARG A 81 1 9 HELIX 3 AA3 ARG A 81 VAL A 89 1 9 HELIX 4 AA4 GLU A 112 ALA A 118 1 7 HELIX 5 AA5 ASP A 129 ARG A 149 1 21 HELIX 6 AA6 SER A 150 LEU A 167 1 18 HELIX 7 AA7 LYS A 168 SER A 170 5 3 HELIX 8 AA8 LEU A 203 LEU A 221 1 19 HELIX 9 AA9 HIS A 224 PHE A 236 1 13 HELIX 10 AB1 SER A 242 ARG A 250 1 9 HELIX 11 AB2 LYS A 264 SER A 278 1 15 HELIX 12 AB3 GLU A 295 PHE A 309 1 15 HELIX 13 AB4 ALA A 365 LEU A 373 1 9 HELIX 14 AB5 THR A 479 TYR A 489 1 11 HELIX 15 AB6 ASN A 496 MET A 500 5 5 HELIX 16 AB7 SER A 549 HIS A 569 1 21 HELIX 17 AB8 SER A 585 HIS A 601 1 17 HELIX 18 AB9 GLN A 639 SER A 653 1 15 HELIX 19 AC1 ASP A 672 ASN A 682 1 11 HELIX 20 AC2 ASP A 706 ALA A 719 1 14 HELIX 21 AC3 SER B 6 ARG B 33 1 28 HELIX 22 AC4 ASP B 36 ARG B 41 1 6 HELIX 23 AC5 LYS B 43 ARG B 58 1 16 HELIX 24 AC6 LEU B 61 GLY B 70 1 10 HELIX 25 AC7 THR B 74 PHE B 101 1 28 HELIX 26 AC8 ASP B 106 MET B 115 1 10 HELIX 27 AC9 PHE B 142 CYS B 156 1 15 HELIX 28 AD1 PRO B 161 VAL B 180 1 20 HELIX 29 AD2 PRO B 187 SER B 191 5 5 HELIX 30 AD3 CYS B 197 CYS B 205 1 9 HELIX 31 AD4 THR B 213 ARG B 217 5 5 HELIX 32 AD5 ASN B 237 LEU B 243 1 7 HELIX 33 AD6 SER B 250 LEU B 265 1 16 HELIX 34 AD7 ALA B 307 GLN B 312 5 6 HELIX 35 AD8 THR B 324 PHE B 355 1 32 HELIX 36 AD9 ASP B 374 ILE B 381 1 8 HELIX 37 AE1 SER B 387 TYR B 400 1 14 HELIX 38 AE2 LEU B 408 SER B 414 1 7 HELIX 39 AE3 SER B 414 ARG B 429 1 16 HELIX 40 AE4 GLY B 486 ARG B 510 1 25 HELIX 41 AE5 SER B 511 ARG B 531 1 21 HELIX 42 AE6 VAL B 538 THR B 560 1 23 HELIX 43 AE7 GLY B 574 LEU B 587 1 14 HELIX 44 AE8 ASP B 592 ALA B 594 5 3 HELIX 45 AE9 LEU B 595 ASN B 608 1 14 HELIX 46 AF1 PRO B 622 ASN B 633 1 12 HELIX 47 AF2 LEU B 637 ARG B 646 1 10 HELIX 48 AF3 ILE B 675 TYR B 700 1 26 HELIX 49 AF4 ASP B 760 LEU B 772 1 13 HELIX 50 AF5 THR C 26 VAL C 35 1 10 HELIX 51 AF6 THR C 61 THR C 80 1 20 HELIX 52 AF7 CYS C 101 LEU C 128 1 28 SHEET 1 AA1 2 THR A 58 VAL A 59 0 SHEET 2 AA1 2 THR A 65 LEU A 66 -1 O LEU A 66 N THR A 58 SHEET 1 AA2 3 ILE A 381 THR A 386 0 SHEET 2 AA2 3 THR A 254 PRO A 259 1 N THR A 254 O PHE A 382 SHEET 3 AA2 3 LEU A 407 VAL A 409 1 O ASN A 408 N VAL A 255 SHEET 1 AA3 2 TYR A 286 THR A 287 0 SHEET 2 AA3 2 PHE A 354 VAL A 355 1 O PHE A 354 N THR A 287 SHEET 1 AA4 3 VAL A 314 HIS A 316 0 SHEET 2 AA4 3 ILE A 322 PHE A 324 -1 O SER A 323 N ASP A 315 SHEET 3 AA4 3 SER A 332 THR A 333 -1 O SER A 332 N PHE A 324 SHEET 1 AA5 6 GLU A 616 PHE A 619 0 SHEET 2 AA5 6 GLY A 575 VAL A 580 1 N VAL A 576 O LEU A 618 SHEET 3 AA5 6 ASP A 503 ASP A 509 1 N VAL A 506 O ALA A 579 SHEET 4 AA5 6 GLY A 520 TYR A 529 -1 O VAL A 526 N TYR A 505 SHEET 5 AA5 6 ASP A 532 PHE A 542 -1 O PHE A 536 N VAL A 525 SHEET 6 AA5 6 VAL A 656 VAL A 663 1 O MET A 657 N TYR A 533 SHEET 1 AA6 2 GLN B 125 ARG B 126 0 SHEET 2 AA6 2 GLU B 139 LEU B 140 -1 O LEU B 140 N GLN B 125 SHEET 1 AA7 4 VAL B 566 ASP B 568 0 SHEET 2 AA7 4 VAL B 755 ASP B 758 1 O TYR B 757 N ILE B 567 SHEET 3 AA7 4 LEU B 737 ILE B 740 -1 N ALA B 739 O VAL B 756 SHEET 4 AA7 4 GLY B 726 TYR B 728 -1 N GLY B 726 O ILE B 740 LINK SG CYS B 121 ZN ZN B 801 1555 1555 2.35 LINK SG CYS B 197 ZN ZN B 802 1555 1555 2.43 LINK SG CYS B 200 ZN ZN B 802 1555 1555 2.36 LINK O CYS B 223 ZN ZN B 802 1555 1555 2.32 LINK ZN ZN B 801 SG CYS C 101 1555 1555 2.94 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000