data_6M6J # _entry.id 6M6J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M6J pdb_00006m6j 10.2210/pdb6m6j/pdb WWPDB D_1300010166 ? ? BMRB 36325 ? 10.13018/BMR36325 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2020-07-29 2 'Structure model' 1 1 2020-09-16 3 'Structure model' 1 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' chem_comp_atom 4 3 'Structure model' chem_comp_bond 5 3 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.pdbx_database_id_DOI' 5 2 'Structure model' '_citation.pdbx_database_id_PubMed' 6 2 'Structure model' '_citation.title' 7 2 'Structure model' '_citation_author.identifier_ORCID' 8 3 'Structure model' '_database_2.pdbx_DOI' 9 3 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6M6J _pdbx_database_status.recvd_initial_deposition_date 2020-03-15 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs REL _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats' _pdbx_database_related.db_id 36325 _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wan, L.' 1 0000-0003-3663-2678 'Lam, S.L.' 2 0000-0001-5368-706X 'Guo, P.' 3 0000-0001-7760-5786 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Chem.Commun.(Camb.)' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1364-548X _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 10127 _citation.page_last 10130 _citation.title 'Rational design of a reversible Mg2+/EDTA-controlled molecular switch based on a DNA minidumbbell.' _citation.year 2020 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1039/d0cc03774e _citation.pdbx_database_id_PubMed 32870195 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wan, L.' 1 0000-0003-3663-2678 primary 'Lam, S.L.' 2 0000-0001-5368-706X primary 'Lee, H.K.' 3 0000-0002-2052-4069 primary 'Guo, P.' 4 0000-0001-7760-5786 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*TP*TP*GP*(3DR)P*CP*TP*TP*G)-3') ; 2588.685 1 ? ? ? ? 2 non-polymer syn 'SODIUM ION' 22.990 8 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DT)(DT)(DG)(3DR)(DC)(DT)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CTTGNCTTG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SODIUM ION' _pdbx_entity_nonpoly.comp_id NA # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DT n 1 3 DT n 1 4 DG n 1 5 3DR n 1 6 DC n 1 7 DT n 1 8 DT n 1 9 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 9 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DT 2 2 2 DT DT A . n A 1 3 DT 3 3 3 DT DT A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 3DR 5 5 5 3DR DX A . n A 1 6 DC 6 6 6 DC DC A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DG 9 9 9 DG DG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NA 1 101 10 NA NA A . C 2 NA 1 102 11 NA NA A . D 2 NA 1 103 12 NA NA A . E 2 NA 1 104 13 NA NA A . F 2 NA 1 105 14 NA NA A . G 2 NA 1 106 15 NA NA A . H 2 NA 1 107 16 NA NA A . I 2 NA 1 108 17 NA NA A . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M6J _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6M6J _struct.title 'NMR solution structure of a DNA minidumbbell containing an abasic bulge between two CTTG repeats' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M6J _struct_keywords.text 'Minidumbbell, Bulge, Abasic site, DNA' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 6M6J _struct_ref.pdbx_db_accession 6M6J _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6M6J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 9 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 6M6J _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 9 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 9 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1310 ? 1 MORE -78 ? 1 'SSA (A^2)' 1570 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 4 "O3'" ? ? ? 1_555 A 3DR 5 P ? ? A DG 4 A 3DR 5 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A 3DR 5 "O3'" ? ? ? 1_555 A DC 6 P ? ? A 3DR 5 A DC 6 1_555 ? ? ? ? ? ? ? 1.610 ? ? metalc1 metalc ? ? A DT 2 OP1 ? ? ? 1_555 H NA . NA ? ? A DT 2 A NA 107 1_555 ? ? ? ? ? ? ? 2.301 ? ? metalc2 metalc ? ? A DT 2 OP2 ? ? ? 1_555 H NA . NA ? ? A DT 2 A NA 107 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc3 metalc ? ? A DT 3 OP1 ? ? ? 1_555 D NA . NA ? ? A DT 3 A NA 103 1_555 ? ? ? ? ? ? ? 3.052 ? ? metalc4 metalc ? ? A DT 3 OP2 ? ? ? 1_555 D NA . NA ? ? A DT 3 A NA 103 1_555 ? ? ? ? ? ? ? 2.282 ? ? metalc5 metalc ? ? A DT 3 "O5'" ? ? ? 1_555 D NA . NA ? ? A DT 3 A NA 103 1_555 ? ? ? ? ? ? ? 2.969 ? ? metalc6 metalc ? ? A DG 4 OP2 ? ? ? 1_555 B NA . NA ? ? A DG 4 A NA 101 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc7 metalc ? ? A DG 4 OP1 ? ? ? 1_555 D NA . NA ? ? A DG 4 A NA 103 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc8 metalc ? ? A DG 4 "O3'" ? ? ? 1_555 F NA . NA ? ? A DG 4 A NA 105 1_555 ? ? ? ? ? ? ? 2.588 ? ? metalc9 metalc ? ? A 3DR 5 OP2 ? ? ? 1_555 B NA . NA ? ? A 3DR 5 A NA 101 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc10 metalc ? ? A 3DR 5 "O3'" ? ? ? 1_555 C NA . NA ? ? A 3DR 5 A NA 102 1_555 ? ? ? ? ? ? ? 2.457 ? ? metalc11 metalc ? ? A 3DR 5 OP1 ? ? ? 1_555 F NA . NA ? ? A 3DR 5 A NA 105 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc12 metalc ? ? A DC 6 OP2 ? ? ? 1_555 C NA . NA ? ? A DC 6 A NA 102 1_555 ? ? ? ? ? ? ? 2.219 ? ? metalc13 metalc ? ? A DC 6 OP1 ? ? ? 1_555 F NA . NA ? ? A DC 6 A NA 105 1_555 ? ? ? ? ? ? ? 2.193 ? ? metalc14 metalc ? ? A DT 7 OP1 ? ? ? 1_555 I NA . NA ? ? A DT 7 A NA 108 1_555 ? ? ? ? ? ? ? 2.307 ? ? metalc15 metalc ? ? A DT 7 OP2 ? ? ? 1_555 I NA . NA ? ? A DT 7 A NA 108 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc16 metalc ? ? A DT 8 OP2 ? ? ? 1_555 E NA . NA ? ? A DT 8 A NA 104 1_555 ? ? ? ? ? ? ? 2.233 ? ? metalc17 metalc ? ? A DT 8 O2 ? ? ? 1_555 G NA . NA ? ? A DT 8 A NA 106 1_555 ? ? ? ? ? ? ? 2.319 ? ? metalc18 metalc ? ? A DG 9 OP1 ? ? ? 1_555 E NA . NA ? ? A DG 9 A NA 104 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc19 metalc ? ? A DG 9 O6 ? ? ? 1_555 G NA . NA ? ? A DG 9 A NA 106 1_555 ? ? ? ? ? ? ? 2.332 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 1 A DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DT 7 O4 ? ? A DT 2 A DT 7 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DT 7 N3 ? ? A DT 2 A DT 7 1_555 ? ? ? ? ? ? TYPE_12_PAIR ? ? ? hydrog6 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 6 A DG 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A DT 2 ? A DT 2 ? 1_555 NA ? H NA . ? A NA 107 ? 1_555 OP2 ? A DT 2 ? A DT 2 ? 1_555 65.2 ? 2 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP2 ? A DT 3 ? A DT 3 ? 1_555 54.1 ? 3 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O5'" ? A DT 3 ? A DT 3 ? 1_555 48.6 ? 4 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 "O5'" ? A DT 3 ? A DT 3 ? 1_555 52.8 ? 5 OP1 ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 118.8 ? 6 OP2 ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 140.8 ? 7 "O5'" ? A DT 3 ? A DT 3 ? 1_555 NA ? D NA . ? A NA 103 ? 1_555 OP1 ? A DG 4 ? A DG 4 ? 1_555 92.2 ? 8 OP2 ? A DG 4 ? A DG 4 ? 1_555 NA ? B NA . ? A NA 101 ? 1_555 OP2 ? A 3DR 5 ? A 3DR 5 ? 1_555 125.8 ? 9 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A 3DR 5 ? A 3DR 5 ? 1_555 60.8 ? 10 "O3'" ? A DG 4 ? A DG 4 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 103.6 ? 11 OP1 ? A 3DR 5 ? A 3DR 5 ? 1_555 NA ? F NA . ? A NA 105 ? 1_555 OP1 ? A DC 6 ? A DC 6 ? 1_555 107.5 ? 12 "O3'" ? A 3DR 5 ? A 3DR 5 ? 1_555 NA ? C NA . ? A NA 102 ? 1_555 OP2 ? A DC 6 ? A DC 6 ? 1_555 62.3 ? 13 OP1 ? A DT 7 ? A DT 7 ? 1_555 NA ? I NA . ? A NA 108 ? 1_555 OP2 ? A DT 7 ? A DT 7 ? 1_555 65.0 ? 14 OP2 ? A DT 8 ? A DT 8 ? 1_555 NA ? E NA . ? A NA 104 ? 1_555 OP1 ? A DG 9 ? A DG 9 ? 1_555 129.2 ? 15 O2 ? A DT 8 ? A DT 8 ? 1_555 NA ? G NA . ? A NA 106 ? 1_555 O6 ? A DG 9 ? A DG 9 ? 1_555 79.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A NA 101 ? 2 'binding site for residue NA A 101' AC2 Software A NA 102 ? 2 'binding site for residue NA A 102' AC3 Software A NA 103 ? 2 'binding site for residue NA A 103' AC4 Software A NA 104 ? 2 'binding site for residue NA A 104' AC5 Software A NA 105 ? 3 'binding site for residue NA A 105' AC6 Software A NA 106 ? 2 'binding site for residue NA A 106' AC7 Software A NA 107 ? 1 'binding site for residue NA A 107' AC8 Software A NA 108 ? 1 'binding site for residue NA A 108' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 DG A 4 ? DG A 4 . ? 1_555 ? 2 AC1 2 3DR A 5 ? 3DR A 5 . ? 1_555 ? 3 AC2 2 3DR A 5 ? 3DR A 5 . ? 1_555 ? 4 AC2 2 DC A 6 ? DC A 6 . ? 1_555 ? 5 AC3 2 DT A 3 ? DT A 3 . ? 1_555 ? 6 AC3 2 DG A 4 ? DG A 4 . ? 1_555 ? 7 AC4 2 DT A 8 ? DT A 8 . ? 1_555 ? 8 AC4 2 DG A 9 ? DG A 9 . ? 1_555 ? 9 AC5 3 DG A 4 ? DG A 4 . ? 1_555 ? 10 AC5 3 3DR A 5 ? 3DR A 5 . ? 1_555 ? 11 AC5 3 DC A 6 ? DC A 6 . ? 1_555 ? 12 AC6 2 DT A 8 ? DT A 8 . ? 1_555 ? 13 AC6 2 DG A 9 ? DG A 9 . ? 1_555 ? 14 AC7 1 DT A 2 ? DT A 2 . ? 1_555 ? 15 AC8 1 DT A 7 ? DT A 7 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.90 108.30 2.60 0.30 N 2 1 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.31 122.90 -5.59 0.60 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.83 108.30 2.53 0.30 N 4 1 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.26 108.30 1.96 0.30 N 5 1 N3 A DC 6 ? ? C2 A DC 6 ? ? O2 A DC 6 ? ? 117.70 121.90 -4.20 0.70 N 6 1 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.17 119.00 4.17 0.60 N 7 1 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.49 122.90 -6.41 0.60 N 8 1 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.30 108.30 3.00 0.30 N 9 2 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.15 108.30 3.85 0.30 N 10 2 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.24 122.90 -5.66 0.60 N 11 2 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.24 108.30 3.94 0.30 N 12 2 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.31 119.00 4.31 0.60 N 13 2 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 115.92 122.90 -6.98 0.60 N 14 2 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.53 108.30 2.23 0.30 N 15 2 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.14 108.30 2.84 0.30 N 16 3 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.77 108.30 3.47 0.30 N 17 3 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.12 122.90 -5.78 0.60 N 18 3 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.84 108.30 2.54 0.30 N 19 3 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.12 108.30 1.82 0.30 N 20 3 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.73 119.00 3.73 0.60 N 21 3 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.76 122.90 -6.14 0.60 N 22 3 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.92 108.30 2.62 0.30 N 23 4 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.31 108.30 3.01 0.30 N 24 4 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.37 122.90 -5.53 0.60 N 25 4 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.96 108.30 2.66 0.30 N 26 4 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.63 122.90 -6.27 0.60 N 27 4 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.43 108.30 3.13 0.30 N 28 5 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.24 108.30 2.94 0.30 N 29 5 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.54 122.90 -5.36 0.60 N 30 5 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.18 108.30 2.88 0.30 N 31 5 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.78 108.30 2.48 0.30 N 32 5 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.82 122.90 -6.08 0.60 N 33 6 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.34 108.30 4.04 0.30 N 34 6 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.28 122.90 -5.62 0.60 N 35 6 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.97 108.30 3.67 0.30 N 36 6 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.40 108.30 2.10 0.30 N 37 6 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.12 122.90 -5.78 0.60 N 38 6 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.87 108.30 3.57 0.30 N 39 7 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.05 108.30 3.75 0.30 N 40 7 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.70 119.00 3.70 0.60 N 41 7 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.97 122.90 -5.93 0.60 N 42 7 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.00 108.30 2.70 0.30 N 43 7 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.56 108.30 2.26 0.30 N 44 7 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.61 119.00 3.61 0.60 N 45 7 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.71 122.90 -6.19 0.60 N 46 7 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.97 108.30 3.67 0.30 N 47 8 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.65 108.30 2.35 0.30 N 48 8 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.50 122.90 -5.40 0.60 N 49 8 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.16 108.30 2.86 0.30 N 50 8 "C3'" A 3DR 5 ? ? "O3'" A 3DR 5 ? ? P A DC 6 ? ? 127.12 119.70 7.42 1.20 Y 51 8 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.66 108.30 3.36 0.30 N 52 8 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 117.02 122.90 -5.88 0.60 N 53 8 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 110.12 108.30 1.82 0.30 N 54 9 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.85 108.30 3.55 0.30 N 55 9 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.30 122.90 -5.60 0.60 N 56 9 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.62 108.30 3.32 0.30 N 57 9 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.32 108.30 2.02 0.30 N 58 9 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.99 122.90 -5.91 0.60 N 59 9 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.44 108.30 3.14 0.30 N 60 10 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.86 108.30 2.56 0.30 N 61 10 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.17 122.90 -5.73 0.60 N 62 10 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.22 108.30 3.92 0.30 N 63 10 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.66 108.30 3.36 0.30 N 64 10 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.59 122.90 -6.31 0.60 N 65 10 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.17 108.30 1.87 0.30 N 66 10 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.57 108.30 3.27 0.30 N 67 11 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.63 108.30 4.33 0.30 N 68 11 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.51 122.90 -5.39 0.60 N 69 11 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.78 108.30 3.48 0.30 N 70 11 "C3'" A 3DR 5 ? ? "O3'" A 3DR 5 ? ? P A DC 6 ? ? 127.06 119.70 7.36 1.20 Y 71 11 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.56 108.30 3.26 0.30 N 72 11 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.82 122.90 -6.08 0.60 N 73 11 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.35 108.30 3.05 0.30 N 74 12 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.54 108.30 4.24 0.30 N 75 12 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.48 122.90 -5.42 0.60 N 76 12 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.89 108.30 3.59 0.30 N 77 12 "C3'" A 3DR 5 ? ? "O3'" A 3DR 5 ? ? P A DC 6 ? ? 127.00 119.70 7.30 1.20 Y 78 12 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.27 108.30 2.97 0.30 N 79 12 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.92 122.90 -5.98 0.60 N 80 12 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 110.40 108.30 2.10 0.30 N 81 12 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.12 108.30 2.82 0.30 N 82 13 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.01 108.30 3.71 0.30 N 83 13 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.23 122.90 -5.67 0.60 N 84 13 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.49 108.30 3.19 0.30 N 85 13 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.50 108.30 2.20 0.30 N 86 13 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.68 119.00 3.68 0.60 N 87 13 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.61 122.90 -6.29 0.60 N 88 13 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.62 108.30 3.32 0.30 N 89 14 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.11 108.30 3.81 0.30 N 90 14 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.38 122.30 -3.92 0.60 N 91 14 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.62 122.90 -5.28 0.60 N 92 14 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.29 108.30 2.99 0.30 N 93 14 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.05 108.30 2.75 0.30 N 94 14 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 109.91 106.00 3.91 0.60 N 95 14 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 117.97 122.30 -4.33 0.60 N 96 14 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.72 122.90 -6.18 0.60 N 97 14 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.52 119.70 7.82 1.20 Y 98 14 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 112.10 108.30 3.80 0.30 N 99 15 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.76 108.30 2.46 0.30 N 100 15 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.13 122.90 -5.77 0.60 N 101 15 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 112.91 108.30 4.61 0.30 N 102 15 N1 A DG 4 ? ? C6 A DG 4 ? ? O6 A DG 4 ? ? 115.70 119.90 -4.20 0.60 N 103 15 "C3'" A 3DR 5 ? ? "O3'" A 3DR 5 ? ? P A DC 6 ? ? 126.93 119.70 7.23 1.20 Y 104 15 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.35 108.30 2.05 0.30 N 105 15 N3 A DT 7 ? ? C2 A DT 7 ? ? O2 A DT 7 ? ? 118.45 122.30 -3.85 0.60 N 106 15 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.75 119.00 3.75 0.60 N 107 15 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.66 122.90 -6.24 0.60 N 108 15 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 126.95 119.70 7.25 1.20 Y 109 16 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.57 108.30 4.27 0.30 N 110 16 N3 A DT 2 ? ? C2 A DT 2 ? ? O2 A DT 2 ? ? 118.01 122.30 -4.29 0.60 N 111 16 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.39 122.90 -5.51 0.60 N 112 16 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.82 108.30 2.52 0.30 N 113 16 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.45 108.30 3.15 0.30 N 114 16 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.04 119.00 4.04 0.60 N 115 16 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.17 122.90 -6.73 0.60 N 116 16 "C3'" A DT 7 ? ? "O3'" A DT 7 ? ? P A DT 8 ? ? 127.05 119.70 7.35 1.20 Y 117 16 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.51 108.30 3.21 0.30 N 118 17 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.99 108.30 3.69 0.30 N 119 17 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.30 122.90 -5.60 0.60 N 120 17 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.10 108.30 2.80 0.30 N 121 17 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.52 108.30 2.22 0.30 N 122 17 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.95 119.00 3.95 0.60 N 123 17 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.42 122.90 -6.48 0.60 N 124 17 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.05 108.30 2.75 0.30 N 125 18 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.81 108.30 2.51 0.30 N 126 18 C4 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 122.67 119.00 3.67 0.60 N 127 18 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 116.88 122.90 -6.02 0.60 N 128 18 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.97 108.30 2.67 0.30 N 129 18 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.14 108.30 1.84 0.30 N 130 18 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.01 119.00 4.01 0.60 N 131 18 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.54 122.90 -6.36 0.60 N 132 18 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.18 108.30 2.88 0.30 N 133 19 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 111.77 108.30 3.47 0.30 N 134 19 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.26 122.90 -5.64 0.60 N 135 19 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 110.84 108.30 2.54 0.30 N 136 19 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.12 108.30 1.82 0.30 N 137 19 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 123.11 119.00 4.11 0.60 N 138 19 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.48 122.90 -6.42 0.60 N 139 19 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.78 108.30 3.48 0.30 N 140 20 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.23 108.30 3.93 0.30 N 141 20 C6 A DT 3 ? ? C5 A DT 3 ? ? C7 A DT 3 ? ? 117.29 122.90 -5.61 0.60 N 142 20 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.73 108.30 3.43 0.30 N 143 20 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 110.22 108.30 1.92 0.30 N 144 20 C4 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 122.62 119.00 3.62 0.60 N 145 20 C6 A DT 7 ? ? C5 A DT 7 ? ? C7 A DT 7 ? ? 116.72 122.90 -6.18 0.60 N 146 20 "O4'" A DG 9 ? ? "C1'" A DG 9 ? ? N9 A DG 9 ? ? 111.35 108.30 3.05 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DT A 3 ? ? 0.077 'SIDE CHAIN' 2 1 DG A 9 ? ? 0.073 'SIDE CHAIN' 3 2 DT A 3 ? ? 0.075 'SIDE CHAIN' 4 2 DT A 7 ? ? 0.062 'SIDE CHAIN' 5 2 DG A 9 ? ? 0.108 'SIDE CHAIN' 6 3 DT A 3 ? ? 0.085 'SIDE CHAIN' 7 3 DT A 7 ? ? 0.064 'SIDE CHAIN' 8 3 DG A 9 ? ? 0.089 'SIDE CHAIN' 9 4 DC A 1 ? ? 0.080 'SIDE CHAIN' 10 4 DT A 3 ? ? 0.096 'SIDE CHAIN' 11 4 DG A 9 ? ? 0.092 'SIDE CHAIN' 12 5 DT A 3 ? ? 0.085 'SIDE CHAIN' 13 5 DG A 9 ? ? 0.071 'SIDE CHAIN' 14 6 DT A 3 ? ? 0.072 'SIDE CHAIN' 15 6 DG A 9 ? ? 0.094 'SIDE CHAIN' 16 7 DT A 3 ? ? 0.081 'SIDE CHAIN' 17 7 DT A 7 ? ? 0.057 'SIDE CHAIN' 18 7 DG A 9 ? ? 0.097 'SIDE CHAIN' 19 8 DT A 3 ? ? 0.073 'SIDE CHAIN' 20 8 DG A 9 ? ? 0.083 'SIDE CHAIN' 21 9 DT A 3 ? ? 0.074 'SIDE CHAIN' 22 9 DT A 7 ? ? 0.069 'SIDE CHAIN' 23 9 DG A 9 ? ? 0.112 'SIDE CHAIN' 24 10 DT A 3 ? ? 0.075 'SIDE CHAIN' 25 10 DT A 7 ? ? 0.059 'SIDE CHAIN' 26 10 DG A 9 ? ? 0.087 'SIDE CHAIN' 27 11 DT A 3 ? ? 0.080 'SIDE CHAIN' 28 11 DG A 9 ? ? 0.085 'SIDE CHAIN' 29 12 DT A 3 ? ? 0.084 'SIDE CHAIN' 30 12 DT A 7 ? ? 0.061 'SIDE CHAIN' 31 12 DG A 9 ? ? 0.102 'SIDE CHAIN' 32 13 DG A 9 ? ? 0.092 'SIDE CHAIN' 33 14 DC A 1 ? ? 0.074 'SIDE CHAIN' 34 14 DT A 2 ? ? 0.065 'SIDE CHAIN' 35 14 DT A 3 ? ? 0.091 'SIDE CHAIN' 36 14 DG A 4 ? ? 0.068 'SIDE CHAIN' 37 14 DT A 8 ? ? 0.089 'SIDE CHAIN' 38 14 DG A 9 ? ? 0.121 'SIDE CHAIN' 39 15 DC A 1 ? ? 0.070 'SIDE CHAIN' 40 15 DT A 2 ? ? 0.115 'SIDE CHAIN' 41 15 DT A 3 ? ? 0.107 'SIDE CHAIN' 42 15 DG A 4 ? ? 0.082 'SIDE CHAIN' 43 15 DG A 9 ? ? 0.059 'SIDE CHAIN' 44 16 DT A 2 ? ? 0.065 'SIDE CHAIN' 45 16 DT A 3 ? ? 0.075 'SIDE CHAIN' 46 16 DT A 7 ? ? 0.088 'SIDE CHAIN' 47 16 DG A 9 ? ? 0.104 'SIDE CHAIN' 48 17 DT A 3 ? ? 0.074 'SIDE CHAIN' 49 17 DG A 9 ? ? 0.079 'SIDE CHAIN' 50 18 DG A 9 ? ? 0.074 'SIDE CHAIN' 51 19 DT A 3 ? ? 0.079 'SIDE CHAIN' 52 19 DG A 9 ? ? 0.099 'SIDE CHAIN' 53 20 DT A 3 ? ? 0.089 'SIDE CHAIN' 54 20 DT A 7 ? ? 0.068 'SIDE CHAIN' 55 20 DG A 9 ? ? 0.103 'SIDE CHAIN' # _pdbx_entry_details.entry_id 6M6J _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest Y # _pdbx_nmr_ensemble.entry_id 6M6J _pdbx_nmr_ensemble.conformers_calculated_total_number 500 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest total energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6M6J _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '0.9 mM NA DNA, 0.02 mM NA DSS, 10 mM NA NaPi, 99.96% D2O' _pdbx_nmr_sample_details.solvent_system '99.96% D2O' _pdbx_nmr_sample_details.label CTTGXCTTG _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ? # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 DNA 0.9 ? mM NA 1 DSS 0.02 ? mM NA 1 NaPi 10 ? mM NA # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 273 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength 10 _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err 0.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label condition_1 _pdbx_nmr_exptl_sample_conditions.pH_err 0.1 _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err 0.01 _pdbx_nmr_exptl_sample_conditions.temperature_err 0.2 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D DQF-COSY' 1 isotropic 3 1 1 '2D 1H-1H TOCSY' 2 isotropic # _pdbx_nmr_refine.entry_id 6M6J _pdbx_nmr_refine.method 'restrained molecular dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 'structure calculation' Amber ? ;David A. Case Thomas E. Cheatham III Tom Darden Holger Gohlke Ray Luo Kenneth M. Merz Jr. Alexey Onufriev Carlos Simmerling Bing Wang Robert J. Woods ; 2 'chemical shift assignment' TopSpin ? Bruker # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 DC OP3 O N N 24 DC P P N N 25 DC OP1 O N N 26 DC OP2 O N N 27 DC "O5'" O N N 28 DC "C5'" C N N 29 DC "C4'" C N R 30 DC "O4'" O N N 31 DC "C3'" C N S 32 DC "O3'" O N N 33 DC "C2'" C N N 34 DC "C1'" C N R 35 DC N1 N N N 36 DC C2 C N N 37 DC O2 O N N 38 DC N3 N N N 39 DC C4 C N N 40 DC N4 N N N 41 DC C5 C N N 42 DC C6 C N N 43 DC HOP3 H N N 44 DC HOP2 H N N 45 DC "H5'" H N N 46 DC "H5''" H N N 47 DC "H4'" H N N 48 DC "H3'" H N N 49 DC "HO3'" H N N 50 DC "H2'" H N N 51 DC "H2''" H N N 52 DC "H1'" H N N 53 DC H41 H N N 54 DC H42 H N N 55 DC H5 H N N 56 DC H6 H N N 57 DG OP3 O N N 58 DG P P N N 59 DG OP1 O N N 60 DG OP2 O N N 61 DG "O5'" O N N 62 DG "C5'" C N N 63 DG "C4'" C N R 64 DG "O4'" O N N 65 DG "C3'" C N S 66 DG "O3'" O N N 67 DG "C2'" C N N 68 DG "C1'" C N R 69 DG N9 N Y N 70 DG C8 C Y N 71 DG N7 N Y N 72 DG C5 C Y N 73 DG C6 C N N 74 DG O6 O N N 75 DG N1 N N N 76 DG C2 C N N 77 DG N2 N N N 78 DG N3 N N N 79 DG C4 C Y N 80 DG HOP3 H N N 81 DG HOP2 H N N 82 DG "H5'" H N N 83 DG "H5''" H N N 84 DG "H4'" H N N 85 DG "H3'" H N N 86 DG "HO3'" H N N 87 DG "H2'" H N N 88 DG "H2''" H N N 89 DG "H1'" H N N 90 DG H8 H N N 91 DG H1 H N N 92 DG H21 H N N 93 DG H22 H N N 94 DT OP3 O N N 95 DT P P N N 96 DT OP1 O N N 97 DT OP2 O N N 98 DT "O5'" O N N 99 DT "C5'" C N N 100 DT "C4'" C N R 101 DT "O4'" O N N 102 DT "C3'" C N S 103 DT "O3'" O N N 104 DT "C2'" C N N 105 DT "C1'" C N R 106 DT N1 N N N 107 DT C2 C N N 108 DT O2 O N N 109 DT N3 N N N 110 DT C4 C N N 111 DT O4 O N N 112 DT C5 C N N 113 DT C7 C N N 114 DT C6 C N N 115 DT HOP3 H N N 116 DT HOP2 H N N 117 DT "H5'" H N N 118 DT "H5''" H N N 119 DT "H4'" H N N 120 DT "H3'" H N N 121 DT "HO3'" H N N 122 DT "H2'" H N N 123 DT "H2''" H N N 124 DT "H1'" H N N 125 DT H3 H N N 126 DT H71 H N N 127 DT H72 H N N 128 DT H73 H N N 129 DT H6 H N N 130 NA NA NA N N 131 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 DC OP3 P sing N N 24 DC OP3 HOP3 sing N N 25 DC P OP1 doub N N 26 DC P OP2 sing N N 27 DC P "O5'" sing N N 28 DC OP2 HOP2 sing N N 29 DC "O5'" "C5'" sing N N 30 DC "C5'" "C4'" sing N N 31 DC "C5'" "H5'" sing N N 32 DC "C5'" "H5''" sing N N 33 DC "C4'" "O4'" sing N N 34 DC "C4'" "C3'" sing N N 35 DC "C4'" "H4'" sing N N 36 DC "O4'" "C1'" sing N N 37 DC "C3'" "O3'" sing N N 38 DC "C3'" "C2'" sing N N 39 DC "C3'" "H3'" sing N N 40 DC "O3'" "HO3'" sing N N 41 DC "C2'" "C1'" sing N N 42 DC "C2'" "H2'" sing N N 43 DC "C2'" "H2''" sing N N 44 DC "C1'" N1 sing N N 45 DC "C1'" "H1'" sing N N 46 DC N1 C2 sing N N 47 DC N1 C6 sing N N 48 DC C2 O2 doub N N 49 DC C2 N3 sing N N 50 DC N3 C4 doub N N 51 DC C4 N4 sing N N 52 DC C4 C5 sing N N 53 DC N4 H41 sing N N 54 DC N4 H42 sing N N 55 DC C5 C6 doub N N 56 DC C5 H5 sing N N 57 DC C6 H6 sing N N 58 DG OP3 P sing N N 59 DG OP3 HOP3 sing N N 60 DG P OP1 doub N N 61 DG P OP2 sing N N 62 DG P "O5'" sing N N 63 DG OP2 HOP2 sing N N 64 DG "O5'" "C5'" sing N N 65 DG "C5'" "C4'" sing N N 66 DG "C5'" "H5'" sing N N 67 DG "C5'" "H5''" sing N N 68 DG "C4'" "O4'" sing N N 69 DG "C4'" "C3'" sing N N 70 DG "C4'" "H4'" sing N N 71 DG "O4'" "C1'" sing N N 72 DG "C3'" "O3'" sing N N 73 DG "C3'" "C2'" sing N N 74 DG "C3'" "H3'" sing N N 75 DG "O3'" "HO3'" sing N N 76 DG "C2'" "C1'" sing N N 77 DG "C2'" "H2'" sing N N 78 DG "C2'" "H2''" sing N N 79 DG "C1'" N9 sing N N 80 DG "C1'" "H1'" sing N N 81 DG N9 C8 sing Y N 82 DG N9 C4 sing Y N 83 DG C8 N7 doub Y N 84 DG C8 H8 sing N N 85 DG N7 C5 sing Y N 86 DG C5 C6 sing N N 87 DG C5 C4 doub Y N 88 DG C6 O6 doub N N 89 DG C6 N1 sing N N 90 DG N1 C2 sing N N 91 DG N1 H1 sing N N 92 DG C2 N2 sing N N 93 DG C2 N3 doub N N 94 DG N2 H21 sing N N 95 DG N2 H22 sing N N 96 DG N3 C4 sing N N 97 DT OP3 P sing N N 98 DT OP3 HOP3 sing N N 99 DT P OP1 doub N N 100 DT P OP2 sing N N 101 DT P "O5'" sing N N 102 DT OP2 HOP2 sing N N 103 DT "O5'" "C5'" sing N N 104 DT "C5'" "C4'" sing N N 105 DT "C5'" "H5'" sing N N 106 DT "C5'" "H5''" sing N N 107 DT "C4'" "O4'" sing N N 108 DT "C4'" "C3'" sing N N 109 DT "C4'" "H4'" sing N N 110 DT "O4'" "C1'" sing N N 111 DT "C3'" "O3'" sing N N 112 DT "C3'" "C2'" sing N N 113 DT "C3'" "H3'" sing N N 114 DT "O3'" "HO3'" sing N N 115 DT "C2'" "C1'" sing N N 116 DT "C2'" "H2'" sing N N 117 DT "C2'" "H2''" sing N N 118 DT "C1'" N1 sing N N 119 DT "C1'" "H1'" sing N N 120 DT N1 C2 sing N N 121 DT N1 C6 sing N N 122 DT C2 O2 doub N N 123 DT C2 N3 sing N N 124 DT N3 C4 sing N N 125 DT N3 H3 sing N N 126 DT C4 O4 doub N N 127 DT C4 C5 sing N N 128 DT C5 C7 sing N N 129 DT C5 C6 doub N N 130 DT C7 H71 sing N N 131 DT C7 H72 sing N N 132 DT C7 H73 sing N N 133 DT C6 H6 sing N N 134 # _ndb_struct_conf_na.entry_id 6M6J _ndb_struct_conf_na.feature 'double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 4 1_555 -0.389 -0.190 0.129 -6.065 -5.596 -0.106 1 A_DC1:DG4_A A 1 ? A 4 ? 19 1 1 A DG 9 1_555 A DC 6 1_555 0.215 -0.177 -0.062 9.087 5.840 2.160 2 A_DG9:DC6_A A 9 ? A 6 ? 19 1 1 A DT 2 1_555 A DT 7 1_555 1.814 -1.230 -0.333 -37.723 21.377 172.912 3 A_DT2:DT7_A A 2 ? A 7 ? 12 2 # _ndb_struct_na_base_pair_step.model_number 1 _ndb_struct_na_base_pair_step.i_label_asym_id_1 A _ndb_struct_na_base_pair_step.i_label_comp_id_1 DC _ndb_struct_na_base_pair_step.i_label_seq_id_1 1 _ndb_struct_na_base_pair_step.i_symmetry_1 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_1 A _ndb_struct_na_base_pair_step.j_label_comp_id_1 DG _ndb_struct_na_base_pair_step.j_label_seq_id_1 4 _ndb_struct_na_base_pair_step.j_symmetry_1 1_555 _ndb_struct_na_base_pair_step.i_label_asym_id_2 A _ndb_struct_na_base_pair_step.i_label_comp_id_2 DG _ndb_struct_na_base_pair_step.i_label_seq_id_2 9 _ndb_struct_na_base_pair_step.i_symmetry_2 1_555 _ndb_struct_na_base_pair_step.j_label_asym_id_2 A _ndb_struct_na_base_pair_step.j_label_comp_id_2 DC _ndb_struct_na_base_pair_step.j_label_seq_id_2 6 _ndb_struct_na_base_pair_step.j_symmetry_2 1_555 _ndb_struct_na_base_pair_step.shift -0.353 _ndb_struct_na_base_pair_step.slide -0.227 _ndb_struct_na_base_pair_step.rise 2.926 _ndb_struct_na_base_pair_step.tilt 2.577 _ndb_struct_na_base_pair_step.roll -5.278 _ndb_struct_na_base_pair_step.twist 13.368 _ndb_struct_na_base_pair_step.x_displacement 3.267 _ndb_struct_na_base_pair_step.y_displacement 3.420 _ndb_struct_na_base_pair_step.helical_rise 2.700 _ndb_struct_na_base_pair_step.inclination -21.372 _ndb_struct_na_base_pair_step.tip -10.436 _ndb_struct_na_base_pair_step.helical_twist 14.596 _ndb_struct_na_base_pair_step.step_number 1 _ndb_struct_na_base_pair_step.step_name AA_DC1DG9:DC6DG4_AA _ndb_struct_na_base_pair_step.i_auth_asym_id_1 A _ndb_struct_na_base_pair_step.i_auth_seq_id_1 1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_1 A _ndb_struct_na_base_pair_step.j_auth_seq_id_1 4 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 ? _ndb_struct_na_base_pair_step.i_auth_asym_id_2 A _ndb_struct_na_base_pair_step.i_auth_seq_id_2 9 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 ? _ndb_struct_na_base_pair_step.j_auth_asym_id_2 A _ndb_struct_na_base_pair_step.j_auth_seq_id_2 6 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 ? # _pdbx_entity_instance_feature.ordinal 1 _pdbx_entity_instance_feature.comp_id 3DR _pdbx_entity_instance_feature.asym_id ? _pdbx_entity_instance_feature.seq_num ? _pdbx_entity_instance_feature.auth_comp_id 3DR _pdbx_entity_instance_feature.auth_asym_id ? _pdbx_entity_instance_feature.auth_seq_num ? _pdbx_entity_instance_feature.feature_type 'SUBJECT OF INVESTIGATION' _pdbx_entity_instance_feature.details ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.details 1 'AVANCE III' ? Bruker 700 ? 2 AVANCE ? Bruker 500 ? # _atom_sites.entry_id 6M6J _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N NA O P # loop_