HEADER OXIDOREDUCTASE 16-MAR-20 6M74 TITLE CRYSTAL STRUCTURE OF ENTEROCOCCUS HIRAE L-LACTATE OXIDASE M207L IN TITLE 2 COMPLEX WITH D-LACTATE FORM LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-LACTATE OXIDASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.3.15; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS HIRAE ATCC 9790; SOURCE 3 ORGANISM_TAXID: 768486; SOURCE 4 GENE: EHR_08130, I584_00297; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET30C KEYWDS L-LACTATE OXIDASE, FMN, ENTEROCOCCUS HIRAE, OXIDOREDUCTASE, L-LACTATE EXPDTA X-RAY DIFFRACTION AUTHOR H.YOSHIDA,K.HIRAKA,W.TSUGAWA,K.SODE REVDAT 4 29-NOV-23 6M74 1 REMARK REVDAT 3 15-NOV-23 6M74 1 LINK ATOM REVDAT 2 05-OCT-22 6M74 1 TITLE JRNL REVDAT 1 17-MAR-21 6M74 0 JRNL AUTH K.HIRAKA,H.YOSHIDA,W.TSUGAWA,R.ASANO,J.T.LA BELLE, JRNL AUTH 2 K.IKEBUKURO,K.SODE JRNL TITL STRUCTURE OF LACTATE OXIDASE FROM ENTEROCOCCUS HIRAE JRNL TITL 2 REVEALED NEW ASPECTS OF ACTIVE SITE LOOP FUNCTION: JRNL TITL 3 PRODUCT-INHIBITION MECHANISM AND OXYGEN GATEKEEPER JRNL REF PROTEIN SCI. V. 31 2022 JRNL REFN ESSN 1469-896X JRNL DOI 10.1002/PRO.4434 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 89192 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.129 REMARK 3 R VALUE (WORKING SET) : 0.128 REMARK 3 FREE R VALUE : 0.144 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4714 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 345 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 73 REMARK 3 SOLVENT ATOMS : 279 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.83 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : -0.54000 REMARK 3 B33 (A**2) : 1.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.045 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.042 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.301 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.976 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.972 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2953 ; 0.006 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2702 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4000 ; 1.387 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6274 ; 1.457 ; 1.583 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 375 ; 6.047 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;36.809 ;22.848 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 475 ;11.775 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.172 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 382 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3344 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 612 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5655 ; 5.563 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M74 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016196. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-5A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93906 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.520 REMARK 200 RESOLUTION RANGE LOW (A) : 19.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 13.10 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.9600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 13.08 REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.360 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 6M73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS, PEG MME, PH 8.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 69.06500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 63.68000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 69.06500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 63.68000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 69.06500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 63.68000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 69.06500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 63.68000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 69.06500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 63.68000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 69.06500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 63.68000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 69.06500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 63.68000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 69.06500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 69.06500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 63.68000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 CYS A 368 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 78 -129.94 54.25 REMARK 500 PRO A 85 49.73 -82.91 REMARK 500 ALA A 101 -135.40 51.48 REMARK 500 LYS A 217 46.08 -86.39 REMARK 500 GLN A 265 -91.76 -115.99 REMARK 500 SER A 293 101.68 109.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FNR A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue LAC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PYR A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue TRS A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 408 DBREF 6M74 A 1 368 UNP I6SYK8 I6SYK8_ENTHA 1 368 SEQADV 6M74 LEU A 207 UNP I6SYK8 MET 207 ENGINEERED MUTATION SEQRES 1 A 368 MET GLU LYS VAL TYR GLN ALA GLY THR HIS GLU GLY MET SEQRES 2 A 368 ILE ASP PHE ILE ASN MET GLU ASP LEU GLU LEU ALA ALA SEQRES 3 A 368 THR GLN VAL ILE PRO SER GLY GLY TYR GLY TYR ILE SER SEQRES 4 A 368 SER GLY ALA GLY ASP LEU PHE THR TYR ARG GLU ASN GLN SEQRES 5 A 368 LYS ALA PHE ASN HIS GLN LEU VAL ILE PRO HIS VAL LEU SEQRES 6 A 368 LYS ASP VAL GLU LEU PRO ASP THR THR THR TYR PHE SER SEQRES 7 A 368 ASP GLU THR LEU ALA ALA PRO ILE ILE MET ALA PRO VAL SEQRES 8 A 368 ALA ALA HIS GLY LEU ALA HIS GLU GLN ALA GLU LYS ALA SEQRES 9 A 368 SER ALA LYS GLY VAL SER GLU PHE GLY THR ILE TYR THR SEQRES 10 A 368 ALA SER SER TYR ALA SER CYS THR LEU GLU GLU ILE ARG SEQRES 11 A 368 ALA ALA GLY GLY PRO GLU ALA PRO GLN TRP PHE GLN PHE SEQRES 12 A 368 TYR MET SER LYS ASP ASP GLY ILE ASN LEU ASP ILE LEU SEQRES 13 A 368 GLU MET ALA LYS ARG ASN GLY ALA LYS ALA VAL VAL LEU SEQRES 14 A 368 THR ALA ASP ALA THR VAL GLY GLY ASN ARG GLU THR ASP SEQRES 15 A 368 ARG ARG ASN GLY PHE THR PHE PRO LEU PRO MET PRO ILE SEQRES 16 A 368 VAL GLN ALA TYR GLN SER GLY VAL GLY GLN THR LEU ASP SEQRES 17 A 368 ALA VAL TYR LYS SER SER LYS GLN LYS LEU SER PRO LYS SEQRES 18 A 368 ASP ILE GLU PHE ILE THR THR HIS SER GLU LEU PRO VAL SEQRES 19 A 368 TYR VAL LYS GLY VAL GLN SER GLU ASP ASP VAL TYR ARG SEQRES 20 A 368 SER LEU ASP ALA GLY ALA GLN GLY ILE TRP VAL SER ASN SEQRES 21 A 368 HIS GLY GLY ARG GLN LEU ASP GLY GLY PRO ALA SER PHE SEQRES 22 A 368 ASP SER LEU ARG TYR VAL ALA GLU ALA VAL ASP LYS ARG SEQRES 23 A 368 VAL PRO ILE VAL PHE ASP SER GLY VAL ARG ARG GLY GLN SEQRES 24 A 368 HIS ILE PHE LYS ALA ILE ALA SER GLY ALA ASP LEU VAL SEQRES 25 A 368 ALA ILE GLY ARG PRO ALA ILE TYR GLY LEU SER LEU GLY SEQRES 26 A 368 GLY SER THR GLY ILE LYS GLN VAL PHE ASP PHE PHE LYS SEQRES 27 A 368 THR GLU LEU GLU MET VAL MET GLN LEU ALA GLY THR GLN SEQRES 28 A 368 THR VAL GLU ASP ILE LYS ASN ALA LYS LEU ARG GLU ASN SEQRES 29 A 368 ARG PHE MET CYS HET FNR A 401 31 HET LAC A 402 6 HET PYR A 403 6 HET PGE A 404 10 HET TRS A 405 8 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HETNAM FNR 1-DEOXY-1-(7,8-DIMETHYL-2,4-DIOXO-3,4-DIHYDRO-2H- HETNAM 2 FNR BENZO[G]PTERIDIN-1-ID-10(5H)-YL)-5-O-PHOSPHONATO-D- HETNAM 3 FNR RIBITOL HETNAM LAC LACTIC ACID HETNAM PYR PYRUVIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HETNAM EDO 1,2-ETHANEDIOL HETSYN FNR TWO ELECTRON REDUCED FLAVIN MONONUCLEOTIDE HETSYN TRS TRIS BUFFER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 FNR C17 H23 N4 O9 P FORMUL 3 LAC C3 H6 O3 FORMUL 4 PYR C3 H4 O3 FORMUL 5 PGE C6 H14 O4 FORMUL 6 TRS C4 H12 N O3 1+ FORMUL 7 EDO 3(C2 H6 O2) FORMUL 10 HOH *279(H2 O) HELIX 1 AA1 ASN A 18 THR A 27 1 10 HELIX 2 AA2 PRO A 31 SER A 40 1 10 HELIX 3 AA3 LEU A 45 ALA A 54 1 10 HELIX 4 AA4 ALA A 93 ALA A 97 5 5 HELIX 5 AA5 GLN A 100 GLY A 113 1 14 HELIX 6 AA6 THR A 125 GLY A 134 1 10 HELIX 7 AA7 ASP A 148 ASN A 162 1 15 HELIX 8 AA8 ARG A 179 GLY A 186 1 8 HELIX 9 AA9 MET A 193 GLN A 197 5 5 HELIX 10 AB1 THR A 206 SER A 214 1 9 HELIX 11 AB2 SER A 219 GLU A 231 1 13 HELIX 12 AB3 SER A 241 ALA A 251 1 11 HELIX 13 AB4 ASN A 260 ARG A 264 5 5 HELIX 14 AB5 ALA A 271 ASP A 284 1 14 HELIX 15 AB6 ARG A 297 SER A 307 1 11 HELIX 16 AB7 GLY A 315 GLY A 349 1 35 HELIX 17 AB8 THR A 352 ASN A 358 1 7 SHEET 1 AA1 2 GLN A 58 LEU A 59 0 SHEET 2 AA1 2 ARG A 362 GLU A 363 -1 O ARG A 362 N LEU A 59 SHEET 1 AA2 2 THR A 75 PHE A 77 0 SHEET 2 AA2 2 GLU A 80 LEU A 82 -1 O LEU A 82 N THR A 75 SHEET 1 AA3 9 ILE A 86 MET A 88 0 SHEET 2 AA3 9 TYR A 116 ALA A 118 1 O THR A 117 N MET A 88 SHEET 3 AA3 9 GLN A 139 PHE A 143 1 O GLN A 142 N ALA A 118 SHEET 4 AA3 9 VAL A 167 THR A 170 1 O VAL A 168 N PHE A 141 SHEET 5 AA3 9 VAL A 234 LYS A 237 1 O TYR A 235 N LEU A 169 SHEET 6 AA3 9 GLY A 255 VAL A 258 1 O TRP A 257 N VAL A 236 SHEET 7 AA3 9 ILE A 289 PHE A 291 1 O VAL A 290 N VAL A 258 SHEET 8 AA3 9 LEU A 311 ILE A 314 1 O ALA A 313 N PHE A 291 SHEET 9 AA3 9 ILE A 86 MET A 88 1 N ILE A 87 O ILE A 314 LINK OH TYR A 211 CA LAC A 402 1555 1555 1.40 SITE 1 AC1 23 ALA A 89 PRO A 90 VAL A 91 ALA A 92 SITE 2 AC1 23 SER A 119 GLN A 142 TYR A 144 THR A 170 SITE 3 AC1 23 LYS A 237 SER A 259 HIS A 261 GLY A 262 SITE 4 AC1 23 ARG A 264 ASP A 292 SER A 293 GLY A 294 SITE 5 AC1 23 ARG A 296 GLY A 315 ARG A 316 LAC A 402 SITE 6 AC1 23 HOH A 518 HOH A 529 HOH A 642 SITE 1 AC2 8 TYR A 37 TYR A 121 TYR A 144 ARG A 179 SITE 2 AC2 8 TYR A 211 HIS A 261 ARG A 264 FNR A 401 SITE 1 AC3 6 SER A 241 LYS A 360 ARG A 362 HOH A 519 SITE 2 AC3 6 HOH A 632 HOH A 709 SITE 1 AC4 4 TYR A 76 PHE A 77 SER A 78 HOH A 652 SITE 1 AC5 6 ASP A 284 ALA A 306 LYS A 357 HOH A 502 SITE 2 AC5 6 HOH A 644 HOH A 658 SITE 1 AC6 8 LEU A 59 PRO A 270 ASP A 274 ARG A 362 SITE 2 AC6 8 GLU A 363 ARG A 365 HOH A 678 HOH A 686 SITE 1 AC7 4 ASN A 178 MET A 343 HOH A 542 HOH A 742 SITE 1 AC8 4 GLY A 43 GLU A 180 ARG A 184 HOH A 507 CRYST1 138.130 138.130 127.360 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007240 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007852 0.00000