HEADER OXIDOREDUCTASE 20-AUG-18 6M7K TITLE STRUCTURE OF MOUSE RECON (AKR1C13) IN COMPLEX WITH CYCLIC AMP-AMP-GMP TITLE 2 (CAAG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C13; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECON, AKR1C13; COMPND 5 EC: 1.1.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYCLIC AMP-AMP-GMP; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CAAG; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: AKR1C13; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS RECON, INNATE IMMUNITY, AKR1C13, CYCLIC AMP-AMP-GMP, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.EAGLESHAM,A.T.WHITELEY,C.C.DE OLIVEIRA MANN,B.R.MOREHOUSE, AUTHOR 2 E.A.NIEMINEN,D.S.KING,A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH REVDAT 4 11-OCT-23 6M7K 1 LINK REVDAT 3 27-MAR-19 6M7K 1 JRNL REVDAT 2 06-MAR-19 6M7K 1 JRNL REVDAT 1 20-FEB-19 6M7K 0 JRNL AUTH A.T.WHITELEY,J.B.EAGLESHAM,C.C.DE OLIVEIRA MANN, JRNL AUTH 2 B.R.MOREHOUSE,B.LOWEY,E.A.NIEMINEN,O.DANILCHANKA,D.S.KING, JRNL AUTH 3 A.S.Y.LEE,J.J.MEKALANOS,P.J.KRANZUSCH JRNL TITL BACTERIAL CGAS-LIKE ENZYMES SYNTHESIZE DIVERSE NUCLEOTIDE JRNL TITL 2 SIGNALS. JRNL REF NATURE V. 567 194 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30787435 JRNL DOI 10.1038/S41586-019-0953-5 REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 130100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.143 REMARK 3 R VALUE (WORKING SET) : 0.143 REMARK 3 FREE R VALUE : 0.157 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.540 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0627 - 2.6511 1.00 9602 150 0.1417 0.1552 REMARK 3 2 2.6511 - 2.1042 1.00 9287 145 0.1285 0.1412 REMARK 3 3 2.1042 - 1.8382 1.00 9226 144 0.1250 0.1363 REMARK 3 4 1.8382 - 1.6701 1.00 9181 144 0.1335 0.1589 REMARK 3 5 1.6701 - 1.5504 1.00 9160 142 0.1329 0.1530 REMARK 3 6 1.5504 - 1.4590 1.00 9134 143 0.1390 0.1583 REMARK 3 7 1.4590 - 1.3859 1.00 9109 142 0.1444 0.1595 REMARK 3 8 1.3859 - 1.3256 1.00 9122 142 0.1524 0.1632 REMARK 3 9 1.3256 - 1.2746 1.00 9100 143 0.1556 0.1669 REMARK 3 10 1.2746 - 1.2306 1.00 9102 142 0.1595 0.1722 REMARK 3 11 1.2306 - 1.1921 1.00 9080 142 0.1618 0.1747 REMARK 3 12 1.1921 - 1.1580 1.00 9098 141 0.1756 0.1786 REMARK 3 13 1.1580 - 1.1275 0.99 9018 141 0.1850 0.1932 REMARK 3 14 1.1275 - 1.1000 0.98 8881 139 0.1995 0.2260 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.080 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2806 REMARK 3 ANGLE : 1.421 3834 REMARK 3 CHIRALITY : 0.210 421 REMARK 3 PLANARITY : 0.010 486 REMARK 3 DIHEDRAL : 17.086 1069 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8537 -8.8519 18.2049 REMARK 3 T TENSOR REMARK 3 T11: 0.0662 T22: 0.0589 REMARK 3 T33: 0.0653 T12: -0.0056 REMARK 3 T13: 0.0036 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 1.2139 L22: 0.3765 REMARK 3 L33: 0.5947 L12: -0.0167 REMARK 3 L13: -0.5803 L23: 0.1101 REMARK 3 S TENSOR REMARK 3 S11: -0.0226 S12: -0.0157 S13: -0.0555 REMARK 3 S21: 0.0125 S22: 0.0214 S23: 0.0336 REMARK 3 S31: 0.0150 S32: -0.0901 S33: 0.0057 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2867 -12.3190 21.9878 REMARK 3 T TENSOR REMARK 3 T11: 0.0778 T22: 0.0609 REMARK 3 T33: 0.0699 T12: 0.0122 REMARK 3 T13: 0.0078 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.9932 L22: 0.6431 REMARK 3 L33: 0.6597 L12: 0.3769 REMARK 3 L13: 0.5494 L23: 0.3669 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: -0.0434 S13: -0.0686 REMARK 3 S21: 0.0886 S22: -0.0013 S23: -0.0172 REMARK 3 S31: 0.0904 S32: 0.0134 S33: -0.0196 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1360 5.1828 11.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.0555 T22: 0.0541 REMARK 3 T33: 0.0468 T12: -0.0027 REMARK 3 T13: 0.0010 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 0.3714 L22: 0.5558 REMARK 3 L33: 0.3306 L12: -0.1701 REMARK 3 L13: -0.0533 L23: 0.0761 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: 0.0071 S13: -0.0098 REMARK 3 S21: -0.0280 S22: -0.0018 S23: 0.0079 REMARK 3 S31: -0.0042 S32: 0.0031 S33: 0.0029 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M7K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236298. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97910 REMARK 200 MONOCHROMATOR : CRYO-COOLED DOUBLE CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 130194 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 46.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29800 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 5UXF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.0 M LITHIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE, 30% PEG6000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.29850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.38000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.38000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.29850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 3 REMARK 465 LYS A 4 REMARK 465 GLN A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG A 250 O HOH A 507 1.53 REMARK 500 OE1 GLN A 270 HO1 EDO A 403 1.59 REMARK 500 O HOH A 720 O HOH A 852 1.83 REMARK 500 O HOH A 934 O HOH A 995 1.85 REMARK 500 OH TYR A 53 O HOH A 501 1.85 REMARK 500 O HOH A 579 O HOH A 925 1.86 REMARK 500 O HOH A 1003 O HOH B 116 1.88 REMARK 500 O HOH A 862 O HOH A 877 1.89 REMARK 500 N HIS A 6 O HOH A 502 1.90 REMARK 500 O SER A 232 O HOH A 503 1.90 REMARK 500 O GLU A 226 O HOH A 503 1.91 REMARK 500 O HOH A 505 O HOH A 588 1.91 REMARK 500 O ASP A 229 O HOH A 503 1.91 REMARK 500 O HOH A 749 O HOH A 943 1.91 REMARK 500 O HOH A 651 O HOH A 755 1.92 REMARK 500 O HOH A 698 O HOH A 877 1.93 REMARK 500 O HOH A 797 O HOH A 982 1.94 REMARK 500 O HOH A 505 O HOH A 715 1.95 REMARK 500 O HOH A 510 O HOH A 858 1.99 REMARK 500 NH2 ARG A 223 O HOH A 504 1.99 REMARK 500 O HOH A 630 O HOH A 750 1.99 REMARK 500 OE1 GLN A 230 O HOH A 505 2.00 REMARK 500 O HOH A 977 O HOH A 987 2.02 REMARK 500 O HOH A 563 O HOH A 945 2.03 REMARK 500 NZ LYS A 123 O HOH A 506 2.04 REMARK 500 O HOH A 721 O HOH A 865 2.04 REMARK 500 NE ARG A 250 O HOH A 507 2.05 REMARK 500 O HOH A 726 O HOH A 819 2.07 REMARK 500 O HOH A 906 O HOH A 947 2.07 REMARK 500 O HOH A 842 O HOH A 963 2.08 REMARK 500 O HOH B 108 O HOH B 111 2.08 REMARK 500 O HOH A 777 O HOH B 115 2.10 REMARK 500 CE1 TYR A 53 O HOH A 501 2.12 REMARK 500 OD1 ASP A 243 O HOH A 508 2.13 REMARK 500 OE1 GLN A 270 O1 EDO A 403 2.13 REMARK 500 O HOH A 570 O HOH A 662 2.14 REMARK 500 OD1 ASP A 78 O HOH A 509 2.16 REMARK 500 CZ TYR A 53 O HOH A 501 2.17 REMARK 500 O HOH A 695 O HOH A 859 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 505 O HOH A 669 3555 1.90 REMARK 500 O HOH A 503 O HOH A 832 3455 1.94 REMARK 500 O HOH A 506 O HOH A 714 3545 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 53 CZ TYR A 53 CE2 -0.082 REMARK 500 A B 1 C2' A B 1 C1' -0.168 REMARK 500 A B 1 O4' A B 1 C1' 0.164 REMARK 500 A B 1 O4' A B 1 C4' -0.122 REMARK 500 A B 1 C2' A B 1 O2' 0.065 REMARK 500 A B 1 C5 A B 1 N7 -0.038 REMARK 500 A B 1 N7 A B 1 C8 0.044 REMARK 500 A B 1 C8 A B 1 N9 -0.048 REMARK 500 A B 1 C6 A B 1 N6 0.102 REMARK 500 A B 2 C4' A B 2 C3' -0.212 REMARK 500 A B 2 C3' A B 2 C2' 0.119 REMARK 500 A B 2 C2' A B 2 C1' -0.222 REMARK 500 A B 2 O4' A B 2 C1' 0.089 REMARK 500 A B 2 O4' A B 2 C4' 0.131 REMARK 500 A B 2 C5 A B 2 N7 -0.043 REMARK 500 A B 2 N9 A B 2 C4 -0.044 REMARK 500 A B 2 C6 A B 2 N6 0.083 REMARK 500 G B 3 C4' G B 3 C3' 0.092 REMARK 500 G B 3 C3' G B 3 C2' -0.234 REMARK 500 G B 3 O4' G B 3 C1' 0.113 REMARK 500 G B 3 O4' G B 3 C4' -0.098 REMARK 500 G B 3 C1' G B 3 N9 -0.098 REMARK 500 G B 3 C2' G B 3 O2' 0.077 REMARK 500 G B 3 N1 G B 3 C2 0.066 REMARK 500 G B 3 C2 G B 3 N3 0.131 REMARK 500 G B 3 N3 G B 3 C4 0.122 REMARK 500 G B 3 C5 G B 3 C6 0.110 REMARK 500 G B 3 C6 G B 3 N1 0.048 REMARK 500 G B 3 C5 G B 3 N7 -0.042 REMARK 500 G B 3 N7 G B 3 C8 0.037 REMARK 500 G B 3 C2 G B 3 N2 0.157 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 250 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 A B 1 N1 - C2 - N3 ANGL. DEV. = -7.4 DEGREES REMARK 500 A B 1 C2 - N3 - C4 ANGL. DEV. = 8.3 DEGREES REMARK 500 A B 1 N3 - C4 - C5 ANGL. DEV. = -5.7 DEGREES REMARK 500 A B 1 C4 - C5 - N7 ANGL. DEV. = -3.5 DEGREES REMARK 500 A B 1 C5 - N7 - C8 ANGL. DEV. = 4.9 DEGREES REMARK 500 A B 1 N7 - C8 - N9 ANGL. DEV. = -5.8 DEGREES REMARK 500 A B 1 C8 - N9 - C4 ANGL. DEV. = 3.3 DEGREES REMARK 500 A B 2 C1' - O4' - C4' ANGL. DEV. = -4.4 DEGREES REMARK 500 A B 2 C2' - C3' - O3' ANGL. DEV. = -13.4 DEGREES REMARK 500 A B 2 C1' - C2' - O2' ANGL. DEV. = 18.6 DEGREES REMARK 500 A B 2 N1 - C2 - N3 ANGL. DEV. = -5.5 DEGREES REMARK 500 A B 2 C2 - N3 - C4 ANGL. DEV. = 6.2 DEGREES REMARK 500 A B 2 N3 - C4 - C5 ANGL. DEV. = -4.4 DEGREES REMARK 500 A B 2 N7 - C8 - N9 ANGL. DEV. = -3.7 DEGREES REMARK 500 A B 2 C8 - N9 - C4 ANGL. DEV. = 3.2 DEGREES REMARK 500 A B 2 N3 - C4 - N9 ANGL. DEV. = 4.9 DEGREES REMARK 500 G B 3 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 G B 3 N1 - C2 - N3 ANGL. DEV. = -3.6 DEGREES REMARK 500 G B 3 C2 - N3 - C4 ANGL. DEV. = 5.6 DEGREES REMARK 500 G B 3 N3 - C4 - C5 ANGL. DEV. = -5.2 DEGREES REMARK 500 G B 3 C5 - C6 - N1 ANGL. DEV. = 5.3 DEGREES REMARK 500 G B 3 C4 - C5 - N7 ANGL. DEV. = -4.3 DEGREES REMARK 500 G B 3 N9 - C4 - C5 ANGL. DEV. = 3.8 DEGREES REMARK 500 G B 3 C6 - C5 - N7 ANGL. DEV. = 3.8 DEGREES REMARK 500 G B 3 C5 - C6 - O6 ANGL. DEV. = -4.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1017 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH A1018 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1019 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH A1020 DISTANCE = 6.82 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 404 DBREF 6M7K A 3 323 UNP Q8VC28 AK1CD_MOUSE 3 323 DBREF 6M7K B 1 3 PDB 6M7K 6M7K 1 3 SEQADV 6M7K ALA A 68 UNP Q8VC28 LYS 68 ENGINEERED MUTATION SEQADV 6M7K ALA A 70 UNP Q8VC28 LYS 70 ENGINEERED MUTATION SEQADV 6M7K ASN A 183 UNP Q8VC28 LYS 183 VARIANT SEQRES 1 A 321 SER LYS GLN HIS CYS VAL LYS LEU ASN ASP GLY HIS LEU SEQRES 2 A 321 ILE PRO ALA LEU GLY PHE GLY THR TYR LYS PRO LYS GLU SEQRES 3 A 321 VAL PRO LYS SER LYS SER LEU GLU ALA ALA CYS LEU ALA SEQRES 4 A 321 LEU ASP VAL GLY TYR ARG HIS VAL ASP THR ALA TYR ALA SEQRES 5 A 321 TYR GLN VAL GLU GLU GLU ILE GLY GLN ALA ILE GLN SER SEQRES 6 A 321 ALA ILE ALA ALA GLY VAL VAL LYS ARG GLU ASP LEU PHE SEQRES 7 A 321 ILE THR THR LYS LEU TRP CYS THR CYS PHE ARG PRO GLU SEQRES 8 A 321 LEU VAL LYS PRO ALA LEU GLU LYS SER LEU LYS LYS LEU SEQRES 9 A 321 GLN LEU ASP TYR VAL ASP LEU TYR ILE MET HIS TYR PRO SEQRES 10 A 321 VAL PRO MET LYS SER GLY ASP ASN ASP PHE PRO VAL ASN SEQRES 11 A 321 GLU GLN GLY LYS SER LEU LEU ASP THR VAL ASP PHE CYS SEQRES 12 A 321 ASP THR TRP GLU ARG LEU GLU GLU CYS LYS ASP ALA GLY SEQRES 13 A 321 LEU VAL LYS SER ILE GLY VAL SER ASN PHE ASN HIS ARG SEQRES 14 A 321 GLN LEU GLU ARG ILE LEU ASN LYS PRO GLY LEU ASN TYR SEQRES 15 A 321 LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS LEU TYR LEU SEQRES 16 A 321 ASN GLN ARG LYS LEU LEU ASP TYR CYS GLU SER LYS ASP SEQRES 17 A 321 ILE VAL LEU VAL ALA TYR GLY ALA LEU GLY THR GLN ARG SEQRES 18 A 321 TYR LYS GLU TRP VAL ASP GLN ASN SER PRO VAL LEU LEU SEQRES 19 A 321 ASN ASP PRO VAL LEU CYS ASP VAL ALA LYS LYS ASN LYS SEQRES 20 A 321 ARG SER PRO ALA LEU ILE ALA LEU ARG TYR LEU ILE GLN SEQRES 21 A 321 ARG GLY ILE VAL PRO LEU ALA GLN SER PHE LYS GLU ASN SEQRES 22 A 321 GLU MET ARG GLU ASN LEU GLN VAL PHE GLY PHE GLN LEU SEQRES 23 A 321 SER PRO GLU ASP MET LYS THR LEU ASP GLY LEU ASN LYS SEQRES 24 A 321 ASN PHE ARG TYR LEU PRO ALA GLU PHE LEU VAL ASP HIS SEQRES 25 A 321 PRO GLU TYR PRO PHE VAL GLU GLU TYR SEQRES 1 B 3 A A G HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 4(C2 H6 O2) FORMUL 7 HOH *537(H2 O) HELIX 1 AA1 PRO A 30 GLY A 45 1 16 HELIX 2 AA2 ALA A 52 GLN A 56 5 5 HELIX 3 AA3 VAL A 57 ALA A 71 1 15 HELIX 4 AA4 LYS A 75 LEU A 79 5 5 HELIX 5 AA5 TRP A 86 PHE A 90 5 5 HELIX 6 AA6 ARG A 91 GLU A 93 5 3 HELIX 7 AA7 LEU A 94 GLN A 107 1 14 HELIX 8 AA8 ASP A 143 ALA A 157 1 15 HELIX 9 AA9 ASN A 169 ASN A 178 1 10 HELIX 10 AB1 GLN A 199 LYS A 209 1 11 HELIX 11 AB2 ARG A 223 ASP A 229 1 7 HELIX 12 AB3 VAL A 234 ASN A 237 5 4 HELIX 13 AB4 ASP A 238 LYS A 249 1 12 HELIX 14 AB5 SER A 251 ARG A 263 1 13 HELIX 15 AB6 LYS A 273 GLN A 282 1 10 HELIX 16 AB7 VAL A 283 PHE A 286 5 4 HELIX 17 AB8 SER A 289 GLY A 298 1 10 HELIX 18 AB9 ALA A 308 VAL A 312 5 5 SHEET 1 AA1 2 CYS A 7 LYS A 9 0 SHEET 2 AA1 2 LEU A 15 PRO A 17 -1 O ILE A 16 N VAL A 8 SHEET 1 AA2 9 GLY A 20 GLY A 22 0 SHEET 2 AA2 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 AA2 9 PHE A 80 LEU A 85 1 O PHE A 80 N VAL A 49 SHEET 4 AA2 9 VAL A 111 MET A 116 1 O ILE A 115 N LEU A 85 SHEET 5 AA2 9 VAL A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA2 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 AA2 9 VAL A 212 TYR A 216 1 O VAL A 214 N VAL A 191 SHEET 8 AA2 9 VAL A 266 ALA A 269 1 O LEU A 268 N ALA A 215 SHEET 9 AA2 9 GLY A 20 GLY A 22 1 N GLY A 20 O ALA A 269 LINK P A B 1 O3' G B 3 1555 1555 1.61 SITE 1 AC1 5 ARG A 200 ARG A 263 ASP A 297 HOH A 548 SITE 2 AC1 5 HOH A 621 SITE 1 AC2 7 TYR A 55 HIS A 117 TYR A 118 ASN A 167 SITE 2 AC2 7 TYR A 216 HOH A 562 A B 1 SITE 1 AC3 7 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC3 7 TYR A 55 LEU A 268 GLN A 270 SITE 1 AC4 6 PHE A 21 GLY A 22 THR A 23 GLN A 270 SITE 2 AC4 6 SER A 271 HOH A 513 CRYST1 50.597 57.070 110.760 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019764 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009029 0.00000