data_6M88 # _entry.id 6M88 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6M88 pdb_00006m88 10.2210/pdb6m88/pdb WWPDB D_1000236340 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6M88 _pdbx_database_status.recvd_initial_deposition_date 2018-08-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wang, H.' 1 ? 'Shears, S.B.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'J. Med. Chem.' _citation.journal_id_ASTM JMCMAR _citation.journal_id_CSD 0151 _citation.journal_id_ISSN 1520-4804 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 62 _citation.language ? _citation.page_first 1443 _citation.page_last 1454 _citation.title 'Inhibition of Inositol Polyphosphate Kinases by Quercetin and Related Flavonoids: A Structure-Activity Analysis.' _citation.year 2019 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1021/acs.jmedchem.8b01593 _citation.pdbx_database_id_PubMed 30624931 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Gu, C.' 1 ? primary 'Stashko, M.A.' 2 ? primary 'Puhl-Rubio, A.C.' 3 ? primary 'Chakraborty, M.' 4 ? primary 'Chakraborty, A.' 5 ? primary 'Frye, S.V.' 6 ? primary 'Pearce, K.H.' 7 ? primary 'Wang, X.' 8 ? primary 'Shears, S.B.' 9 ? primary 'Wang, H.' 10 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6M88 _cell.details ? _cell.formula_units_Z ? _cell.length_a 77.717 _cell.length_a_esd ? _cell.length_b 77.717 _cell.length_b_esd ? _cell.length_c 84.465 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6M88 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Inositol polyphosphate multikinase,Inositol polyphosphate multikinase' 29827.912 1 2.7.1.151,2.7.1.151 ? ? ? 2 non-polymer syn '3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE' 318.235 1 ? ? ? ? 3 water nat water 18.015 177 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Inositol 1,3,4,6-tetrakisphosphate 5-kinase,Inositol 1,3,4,6-tetrakisphosphate 5-kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSFTSHQVAGHMYGKDKVGILQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPND LYLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEIGFLVLGMRVYHVHSDSYETENQHYGRSLTKE TIKDGVSRFFHNGYCLRKDAVAASIQKIEKILQWFENQKQLNFYASSLLFVYEGSSQGGSGGEVEVRMIDFAHVFPSNTI DEGYVYGLKHLISVLRSILDN ; _entity_poly.pdbx_seq_one_letter_code_can ;GSFTSHQVAGHMYGKDKVGILQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPND LYLKLEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEIGFLVLGMRVYHVHSDSYETENQHYGRSLTKE TIKDGVSRFFHNGYCLRKDAVAASIQKIEKILQWFENQKQLNFYASSLLFVYEGSSQGGSGGEVEVRMIDFAHVFPSNTI DEGYVYGLKHLISVLRSILDN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 PHE n 1 4 THR n 1 5 SER n 1 6 HIS n 1 7 GLN n 1 8 VAL n 1 9 ALA n 1 10 GLY n 1 11 HIS n 1 12 MET n 1 13 TYR n 1 14 GLY n 1 15 LYS n 1 16 ASP n 1 17 LYS n 1 18 VAL n 1 19 GLY n 1 20 ILE n 1 21 LEU n 1 22 GLN n 1 23 HIS n 1 24 PRO n 1 25 ASP n 1 26 GLY n 1 27 THR n 1 28 VAL n 1 29 LEU n 1 30 LYS n 1 31 GLN n 1 32 LEU n 1 33 GLN n 1 34 PRO n 1 35 PRO n 1 36 PRO n 1 37 ARG n 1 38 GLY n 1 39 PRO n 1 40 ARG n 1 41 GLU n 1 42 LEU n 1 43 GLU n 1 44 PHE n 1 45 TYR n 1 46 ASN n 1 47 MET n 1 48 VAL n 1 49 TYR n 1 50 ALA n 1 51 ALA n 1 52 ASP n 1 53 CYS n 1 54 PHE n 1 55 ASP n 1 56 GLY n 1 57 VAL n 1 58 LEU n 1 59 LEU n 1 60 GLU n 1 61 LEU n 1 62 ARG n 1 63 LYS n 1 64 TYR n 1 65 LEU n 1 66 PRO n 1 67 LYS n 1 68 TYR n 1 69 TYR n 1 70 GLY n 1 71 ILE n 1 72 TRP n 1 73 SER n 1 74 PRO n 1 75 PRO n 1 76 THR n 1 77 ALA n 1 78 PRO n 1 79 ASN n 1 80 ASP n 1 81 LEU n 1 82 TYR n 1 83 LEU n 1 84 LYS n 1 85 LEU n 1 86 GLU n 1 87 ASP n 1 88 VAL n 1 89 THR n 1 90 HIS n 1 91 LYS n 1 92 PHE n 1 93 ASN n 1 94 LYS n 1 95 PRO n 1 96 CYS n 1 97 ILE n 1 98 MET n 1 99 ASP n 1 100 VAL n 1 101 LYS n 1 102 ILE n 1 103 GLY n 1 104 GLN n 1 105 LYS n 1 106 SER n 1 107 TYR n 1 108 ASP n 1 109 PRO n 1 110 PHE n 1 111 ALA n 1 112 SER n 1 113 SER n 1 114 GLU n 1 115 LYS n 1 116 ILE n 1 117 GLN n 1 118 GLN n 1 119 GLN n 1 120 VAL n 1 121 SER n 1 122 LYS n 1 123 TYR n 1 124 PRO n 1 125 LEU n 1 126 MET n 1 127 GLU n 1 128 GLU n 1 129 ILE n 1 130 GLY n 1 131 PHE n 1 132 LEU n 1 133 VAL n 1 134 LEU n 1 135 GLY n 1 136 MET n 1 137 ARG n 1 138 VAL n 1 139 TYR n 1 140 HIS n 1 141 VAL n 1 142 HIS n 1 143 SER n 1 144 ASP n 1 145 SER n 1 146 TYR n 1 147 GLU n 1 148 THR n 1 149 GLU n 1 150 ASN n 1 151 GLN n 1 152 HIS n 1 153 TYR n 1 154 GLY n 1 155 ARG n 1 156 SER n 1 157 LEU n 1 158 THR n 1 159 LYS n 1 160 GLU n 1 161 THR n 1 162 ILE n 1 163 LYS n 1 164 ASP n 1 165 GLY n 1 166 VAL n 1 167 SER n 1 168 ARG n 1 169 PHE n 1 170 PHE n 1 171 HIS n 1 172 ASN n 1 173 GLY n 1 174 TYR n 1 175 CYS n 1 176 LEU n 1 177 ARG n 1 178 LYS n 1 179 ASP n 1 180 ALA n 1 181 VAL n 1 182 ALA n 1 183 ALA n 1 184 SER n 1 185 ILE n 1 186 GLN n 1 187 LYS n 1 188 ILE n 1 189 GLU n 1 190 LYS n 1 191 ILE n 1 192 LEU n 1 193 GLN n 1 194 TRP n 1 195 PHE n 1 196 GLU n 1 197 ASN n 1 198 GLN n 1 199 LYS n 1 200 GLN n 1 201 LEU n 1 202 ASN n 1 203 PHE n 1 204 TYR n 1 205 ALA n 1 206 SER n 1 207 SER n 1 208 LEU n 1 209 LEU n 1 210 PHE n 1 211 VAL n 1 212 TYR n 1 213 GLU n 1 214 GLY n 1 215 SER n 1 216 SER n 1 217 GLN n 1 218 GLY n 1 219 GLY n 1 220 SER n 1 221 GLY n 1 222 GLY n 1 223 GLU n 1 224 VAL n 1 225 GLU n 1 226 VAL n 1 227 ARG n 1 228 MET n 1 229 ILE n 1 230 ASP n 1 231 PHE n 1 232 ALA n 1 233 HIS n 1 234 VAL n 1 235 PHE n 1 236 PRO n 1 237 SER n 1 238 ASN n 1 239 THR n 1 240 ILE n 1 241 ASP n 1 242 GLU n 1 243 GLY n 1 244 TYR n 1 245 VAL n 1 246 TYR n 1 247 GLY n 1 248 LEU n 1 249 LYS n 1 250 HIS n 1 251 LEU n 1 252 ILE n 1 253 SER n 1 254 VAL n 1 255 LEU n 1 256 ARG n 1 257 SER n 1 258 ILE n 1 259 LEU n 1 260 ASP n 1 261 ASN n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 217 Human ? 'IPMK, IMPK' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 1 2 sample 'Biological sequence' 218 261 Human ? 'IPMK, IMPK' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP IPMK_HUMAN Q8NFU5 ? 1 ;SHQVAGHMYGKDKVGILQHPDGTVLKQLQPPPRGPRELEFYNMVYAADCFDGVLLELRKYLPKYYGIWSPPTAPNDLYLK LEDVTHKFNKPCIMDVKIGQKSYDPFASSEKIQQQVSKYPLMEEIGFLVLGMRVYHVHSDSYETENQHYGRSLTKETIKD GVSRFFHNGYCLRKDAVAASIQKIEKILQWFENQKQLNFYASSLLFVYEGSSQ ; 50 2 UNP IPMK_HUMAN Q8NFU5 ? 1 EVEVRMIDFAHVFPSNTIDEGYVYGLKHLISVLRSILDN 378 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6M88 A 5 ? 217 ? Q8NFU5 50 ? 262 ? 50 372 2 2 6M88 A 223 ? 261 ? Q8NFU5 378 ? 416 ? 378 416 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6M88 GLY A 1 ? UNP Q8NFU5 ? ? 'expression tag' 46 1 1 6M88 SER A 2 ? UNP Q8NFU5 ? ? 'expression tag' 47 2 1 6M88 PHE A 3 ? UNP Q8NFU5 ? ? 'expression tag' 48 3 1 6M88 THR A 4 ? UNP Q8NFU5 ? ? 'expression tag' 49 4 1 6M88 GLY A 218 ? UNP Q8NFU5 ? ? linker 373 5 1 6M88 GLY A 219 ? UNP Q8NFU5 ? ? linker 374 6 1 6M88 SER A 220 ? UNP Q8NFU5 ? ? linker 375 7 1 6M88 GLY A 221 ? UNP Q8NFU5 ? ? linker 376 8 1 6M88 GLY A 222 ? UNP Q8NFU5 ? ? linker 377 9 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MYC non-polymer . '3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE' ;2-(3,4,5-TRIHYDROXYPHENYL)-3,5,7-TRIHYDROXY-4H-1-BENZOPYRAN-4-ONE; 3,3',4',5,5',7-HEXAHYDROXYFLAVONE; MYRICETIN; CANNABISCETIN ; 'C15 H10 O8' 318.235 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6M88 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.17 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 43.24 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;35% (w/v) PEG 400, 0.1 M Li2SO4, 100 mM MES Imidanzol buffer , pH 6.0, 50 mM beta-mercaptoethanol at 298K. To obtain complex structure, the apo crystal was further soaked under 35% (w/v) PEG 400, 0.1 M Li2SO4, 100 mM HEPES, pH 7.5 at 298K in the presence of 2 mM myricetin for 3 days. ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX300-HS' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2018-04-12 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 22-ID' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 22-ID _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 16.83 _reflns.entry_id 6M88 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.90 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 20939 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 9.7 _reflns.pdbx_Rmerge_I_obs 0.123 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 16.9 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.308 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.130 _reflns.pdbx_Rpim_I_all 0.040 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.977 _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.90 _reflns_shell.d_res_low 1.93 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 4.0 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 1023 _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.728 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 9.6 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared 0.892 _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all 0.768 _reflns_shell.pdbx_Rpim_I_all 0.241 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half 0.880 _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] -0.24 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] -0.24 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] 0.47 _refine.B_iso_max ? _refine.B_iso_mean 24.725 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc 0.946 _refine.correlation_coeff_Fo_to_Fc_free 0.902 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6M88 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.90 _refine.ls_d_res_low 50.0 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 19777 _refine.ls_number_reflns_R_free 1068 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.32 _refine.ls_percent_reflns_R_free 5.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.17689 _refine.ls_R_factor_R_free 0.24428 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.17337 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 5w2g _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R 0.780 _refine.pdbx_overall_ESU_R_Free 0.156 _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B 8.012 _refine.overall_SU_ML 0.107 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id 1 _refine_hist.pdbx_number_atoms_protein 1935 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 23 _refine_hist.number_atoms_solvent 177 _refine_hist.number_atoms_total 2135 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 50.0 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.009 0.019 2032 ? r_bond_refined_d ? ? 'X-RAY DIFFRACTION' ? 0.002 0.020 1831 ? r_bond_other_d ? ? 'X-RAY DIFFRACTION' ? 1.310 1.976 2757 ? r_angle_refined_deg ? ? 'X-RAY DIFFRACTION' ? 0.907 3.000 4268 ? r_angle_other_deg ? ? 'X-RAY DIFFRACTION' ? 6.457 5.000 241 ? r_dihedral_angle_1_deg ? ? 'X-RAY DIFFRACTION' ? 36.511 24.227 97 ? r_dihedral_angle_2_deg ? ? 'X-RAY DIFFRACTION' ? 12.921 15.000 348 ? r_dihedral_angle_3_deg ? ? 'X-RAY DIFFRACTION' ? 13.652 15.000 9 ? r_dihedral_angle_4_deg ? ? 'X-RAY DIFFRACTION' ? 0.071 0.200 287 ? r_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.005 0.021 2250 ? r_gen_planes_refined ? ? 'X-RAY DIFFRACTION' ? 0.001 0.020 420 ? r_gen_planes_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_nbtor_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_xyhbond_nbd_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_vdw_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_hbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_refined ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_symmetry_metal_ion_other ? ? 'X-RAY DIFFRACTION' ? 2.371 2.304 961 ? r_mcbond_it ? ? 'X-RAY DIFFRACTION' ? 2.370 2.302 960 ? r_mcbond_other ? ? 'X-RAY DIFFRACTION' ? 3.290 3.448 1203 ? r_mcangle_it ? ? 'X-RAY DIFFRACTION' ? 3.289 3.450 1204 ? r_mcangle_other ? ? 'X-RAY DIFFRACTION' ? 2.394 2.622 1070 ? r_scbond_it ? ? 'X-RAY DIFFRACTION' ? 2.393 2.622 1071 ? r_scbond_other ? ? 'X-RAY DIFFRACTION' ? ? ? ? ? r_scangle_it ? ? 'X-RAY DIFFRACTION' ? 3.114 3.843 1554 ? r_scangle_other ? ? 'X-RAY DIFFRACTION' ? 4.953 28.323 2479 ? r_long_range_B_refined ? ? 'X-RAY DIFFRACTION' ? 4.789 28.052 2455 ? r_long_range_B_other ? ? 'X-RAY DIFFRACTION' ? 1.487 3.000 3859 ? r_rigid_bond_restr ? ? 'X-RAY DIFFRACTION' ? 43.736 5.000 83 ? r_sphericity_free ? ? 'X-RAY DIFFRACTION' ? 22.157 5.000 3901 ? r_sphericity_bonded ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.901 _refine_ls_shell.d_res_low 1.950 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 70 _refine_ls_shell.number_reflns_R_work 1417 _refine_ls_shell.percent_reflns_obs 97.51 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.248 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.171 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 6M88 _struct.title 'Crystal structure of the core catalytic domain of human inositol phosphate multikinase in complex with myricetin' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6M88 _struct_keywords.text ;kinase, inositol, inositol polyphosphate, TRANSFERASE, myricetin, flavonoid, inhibitor, natural product, TRANSFERASE-TRANSFERASE Inhibitor complex ; _struct_keywords.pdbx_keywords 'TRANSFERASE/TRANSFERASE Inhibitor' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 PRO A 36 ? TYR A 49 ? PRO A 81 TYR A 94 1 ? 14 HELX_P HELX_P2 AA2 ASP A 55 ? ARG A 62 ? ASP A 100 ARG A 107 1 ? 8 HELX_P HELX_P3 AA3 LYS A 63 ? LEU A 65 ? LYS A 108 LEU A 110 5 ? 3 HELX_P HELX_P4 AA4 SER A 112 ? TYR A 123 ? SER A 157 TYR A 168 1 ? 12 HELX_P HELX_P5 AA5 LEU A 125 ? GLY A 130 ? LEU A 170 GLY A 175 1 ? 6 HELX_P HELX_P6 AA6 ASN A 150 ? SER A 156 ? ASN A 195 SER A 201 1 ? 7 HELX_P HELX_P7 AA7 THR A 161 ? ARG A 168 ? THR A 206 ARG A 213 1 ? 8 HELX_P HELX_P8 AA8 PHE A 169 ? HIS A 171 ? PHE A 214 HIS A 216 5 ? 3 HELX_P HELX_P9 AA9 ARG A 177 ? ASN A 197 ? ARG A 222 ASN A 242 1 ? 21 HELX_P HELX_P10 AB1 ASP A 241 ? LEU A 259 ? ASP A 396 LEU A 414 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 35 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 80 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 36 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 81 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 2.93 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 5 ? AA3 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA1 2 3 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA2 4 5 ? anti-parallel AA3 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 THR A 27 ? GLN A 31 ? THR A 72 GLN A 76 AA1 2 TYR A 82 ? GLU A 86 ? TYR A 127 GLU A 131 AA1 3 TYR A 68 ? TRP A 72 ? TYR A 113 TRP A 117 AA2 1 SER A 145 ? GLU A 149 ? SER A 190 GLU A 194 AA2 2 PHE A 131 ? HIS A 140 ? PHE A 176 HIS A 185 AA2 3 PRO A 95 ? ILE A 102 ? PRO A 140 ILE A 147 AA2 4 SER A 206 ? GLU A 213 ? SER A 251 GLU A 258 AA2 5 VAL A 224 ? ILE A 229 ? VAL A 379 ILE A 384 AA3 1 LEU A 201 ? PHE A 203 ? LEU A 246 PHE A 248 AA3 2 VAL A 234 ? PRO A 236 ? VAL A 389 PRO A 391 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N VAL A 28 ? N VAL A 73 O LEU A 85 ? O LEU A 130 AA1 2 3 O LYS A 84 ? O LYS A 129 N TYR A 69 ? N TYR A 114 AA2 1 2 O SER A 145 ? O SER A 190 N HIS A 140 ? N HIS A 185 AA2 2 3 O LEU A 132 ? O LEU A 177 N LYS A 101 ? N LYS A 146 AA2 3 4 N MET A 98 ? N MET A 143 O PHE A 210 ? O PHE A 255 AA2 4 5 N LEU A 209 ? N LEU A 254 O ARG A 227 ? O ARG A 382 AA3 1 2 N ASN A 202 ? N ASN A 247 O PHE A 235 ? O PHE A 390 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MYC _struct_site.pdbx_auth_seq_id 501 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'binding site for residue MYC A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 ILE A 20 ? ILE A 65 . ? 1_555 ? 2 AC1 14 VAL A 28 ? VAL A 73 . ? 1_555 ? 3 AC1 14 LYS A 30 ? LYS A 75 . ? 1_555 ? 4 AC1 14 PRO A 66 ? PRO A 111 . ? 1_555 ? 5 AC1 14 LEU A 85 ? LEU A 130 . ? 1_555 ? 6 AC1 14 GLU A 86 ? GLU A 131 . ? 1_555 ? 7 AC1 14 ASP A 87 ? ASP A 132 . ? 1_555 ? 8 AC1 14 VAL A 88 ? VAL A 133 . ? 1_555 ? 9 AC1 14 THR A 89 ? THR A 134 . ? 1_555 ? 10 AC1 14 ILE A 97 ? ILE A 142 . ? 1_555 ? 11 AC1 14 ARG A 137 ? ARG A 182 . ? 1_555 ? 12 AC1 14 ILE A 229 ? ILE A 384 . ? 1_555 ? 13 AC1 14 HOH C . ? HOH A 616 . ? 1_555 ? 14 AC1 14 HOH C . ? HOH A 657 . ? 1_555 ? # _atom_sites.entry_id 6M88 _atom_sites.fract_transf_matrix[1][1] 0.012867 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012867 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011839 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 46 ? ? ? A . n A 1 2 SER 2 47 ? ? ? A . n A 1 3 PHE 3 48 ? ? ? A . n A 1 4 THR 4 49 ? ? ? A . n A 1 5 SER 5 50 ? ? ? A . n A 1 6 HIS 6 51 ? ? ? A . n A 1 7 GLN 7 52 ? ? ? A . n A 1 8 VAL 8 53 ? ? ? A . n A 1 9 ALA 9 54 ? ? ? A . n A 1 10 GLY 10 55 ? ? ? A . n A 1 11 HIS 11 56 ? ? ? A . n A 1 12 MET 12 57 ? ? ? A . n A 1 13 TYR 13 58 ? ? ? A . n A 1 14 GLY 14 59 ? ? ? A . n A 1 15 LYS 15 60 ? ? ? A . n A 1 16 ASP 16 61 ? ? ? A . n A 1 17 LYS 17 62 ? ? ? A . n A 1 18 VAL 18 63 ? ? ? A . n A 1 19 GLY 19 64 ? ? ? A . n A 1 20 ILE 20 65 65 ILE ILE A . n A 1 21 LEU 21 66 66 LEU LEU A . n A 1 22 GLN 22 67 67 GLN GLN A . n A 1 23 HIS 23 68 68 HIS HIS A . n A 1 24 PRO 24 69 69 PRO PRO A . n A 1 25 ASP 25 70 70 ASP ASP A . n A 1 26 GLY 26 71 71 GLY GLY A . n A 1 27 THR 27 72 72 THR THR A . n A 1 28 VAL 28 73 73 VAL VAL A . n A 1 29 LEU 29 74 74 LEU LEU A . n A 1 30 LYS 30 75 75 LYS LYS A . n A 1 31 GLN 31 76 76 GLN GLN A . n A 1 32 LEU 32 77 77 LEU LEU A . n A 1 33 GLN 33 78 78 GLN GLN A . n A 1 34 PRO 34 79 79 PRO PRO A . n A 1 35 PRO 35 80 80 PRO PRO A . n A 1 36 PRO 36 81 81 PRO PRO A . n A 1 37 ARG 37 82 82 ARG ARG A . n A 1 38 GLY 38 83 83 GLY GLY A . n A 1 39 PRO 39 84 84 PRO PRO A . n A 1 40 ARG 40 85 85 ARG ARG A . n A 1 41 GLU 41 86 86 GLU GLU A . n A 1 42 LEU 42 87 87 LEU LEU A . n A 1 43 GLU 43 88 88 GLU GLU A . n A 1 44 PHE 44 89 89 PHE PHE A . n A 1 45 TYR 45 90 90 TYR TYR A . n A 1 46 ASN 46 91 91 ASN ASN A . n A 1 47 MET 47 92 92 MET MET A . n A 1 48 VAL 48 93 93 VAL VAL A . n A 1 49 TYR 49 94 94 TYR TYR A . n A 1 50 ALA 50 95 95 ALA ALA A . n A 1 51 ALA 51 96 96 ALA ALA A . n A 1 52 ASP 52 97 97 ASP ASP A . n A 1 53 CYS 53 98 98 CYS CYS A . n A 1 54 PHE 54 99 99 PHE PHE A . n A 1 55 ASP 55 100 100 ASP ASP A . n A 1 56 GLY 56 101 101 GLY GLY A . n A 1 57 VAL 57 102 102 VAL VAL A . n A 1 58 LEU 58 103 103 LEU LEU A . n A 1 59 LEU 59 104 104 LEU LEU A . n A 1 60 GLU 60 105 105 GLU GLU A . n A 1 61 LEU 61 106 106 LEU LEU A . n A 1 62 ARG 62 107 107 ARG ARG A . n A 1 63 LYS 63 108 108 LYS LYS A . n A 1 64 TYR 64 109 109 TYR TYR A . n A 1 65 LEU 65 110 110 LEU LEU A . n A 1 66 PRO 66 111 111 PRO PRO A . n A 1 67 LYS 67 112 112 LYS LYS A . n A 1 68 TYR 68 113 113 TYR TYR A . n A 1 69 TYR 69 114 114 TYR TYR A . n A 1 70 GLY 70 115 115 GLY GLY A . n A 1 71 ILE 71 116 116 ILE ILE A . n A 1 72 TRP 72 117 117 TRP TRP A . n A 1 73 SER 73 118 118 SER SER A . n A 1 74 PRO 74 119 119 PRO PRO A . n A 1 75 PRO 75 120 120 PRO PRO A . n A 1 76 THR 76 121 121 THR THR A . n A 1 77 ALA 77 122 122 ALA ALA A . n A 1 78 PRO 78 123 123 PRO PRO A . n A 1 79 ASN 79 124 124 ASN ASN A . n A 1 80 ASP 80 125 125 ASP ASP A . n A 1 81 LEU 81 126 126 LEU LEU A . n A 1 82 TYR 82 127 127 TYR TYR A . n A 1 83 LEU 83 128 128 LEU LEU A . n A 1 84 LYS 84 129 129 LYS LYS A . n A 1 85 LEU 85 130 130 LEU LEU A . n A 1 86 GLU 86 131 131 GLU GLU A . n A 1 87 ASP 87 132 132 ASP ASP A . n A 1 88 VAL 88 133 133 VAL VAL A . n A 1 89 THR 89 134 134 THR THR A . n A 1 90 HIS 90 135 135 HIS HIS A . n A 1 91 LYS 91 136 136 LYS LYS A . n A 1 92 PHE 92 137 137 PHE PHE A . n A 1 93 ASN 93 138 138 ASN ASN A . n A 1 94 LYS 94 139 139 LYS LYS A . n A 1 95 PRO 95 140 140 PRO PRO A . n A 1 96 CYS 96 141 141 CYS CYS A . n A 1 97 ILE 97 142 142 ILE ILE A . n A 1 98 MET 98 143 143 MET MET A . n A 1 99 ASP 99 144 144 ASP ASP A . n A 1 100 VAL 100 145 145 VAL VAL A . n A 1 101 LYS 101 146 146 LYS LYS A . n A 1 102 ILE 102 147 147 ILE ILE A . n A 1 103 GLY 103 148 148 GLY GLY A . n A 1 104 GLN 104 149 149 GLN GLN A . n A 1 105 LYS 105 150 150 LYS LYS A . n A 1 106 SER 106 151 151 SER SER A . n A 1 107 TYR 107 152 152 TYR TYR A . n A 1 108 ASP 108 153 153 ASP ASP A . n A 1 109 PRO 109 154 154 PRO PRO A . n A 1 110 PHE 110 155 155 PHE PHE A . n A 1 111 ALA 111 156 156 ALA ALA A . n A 1 112 SER 112 157 157 SER SER A . n A 1 113 SER 113 158 158 SER SER A . n A 1 114 GLU 114 159 159 GLU GLU A . n A 1 115 LYS 115 160 160 LYS LYS A . n A 1 116 ILE 116 161 161 ILE ILE A . n A 1 117 GLN 117 162 162 GLN GLN A . n A 1 118 GLN 118 163 163 GLN GLN A . n A 1 119 GLN 119 164 164 GLN GLN A . n A 1 120 VAL 120 165 165 VAL VAL A . n A 1 121 SER 121 166 166 SER SER A . n A 1 122 LYS 122 167 167 LYS LYS A . n A 1 123 TYR 123 168 168 TYR TYR A . n A 1 124 PRO 124 169 169 PRO PRO A . n A 1 125 LEU 125 170 170 LEU LEU A . n A 1 126 MET 126 171 171 MET MET A . n A 1 127 GLU 127 172 172 GLU GLU A . n A 1 128 GLU 128 173 173 GLU GLU A . n A 1 129 ILE 129 174 174 ILE ILE A . n A 1 130 GLY 130 175 175 GLY GLY A . n A 1 131 PHE 131 176 176 PHE PHE A . n A 1 132 LEU 132 177 177 LEU LEU A . n A 1 133 VAL 133 178 178 VAL VAL A . n A 1 134 LEU 134 179 179 LEU LEU A . n A 1 135 GLY 135 180 180 GLY GLY A . n A 1 136 MET 136 181 181 MET MET A . n A 1 137 ARG 137 182 182 ARG ARG A . n A 1 138 VAL 138 183 183 VAL VAL A . n A 1 139 TYR 139 184 184 TYR TYR A . n A 1 140 HIS 140 185 185 HIS HIS A . n A 1 141 VAL 141 186 186 VAL VAL A . n A 1 142 HIS 142 187 187 HIS HIS A . n A 1 143 SER 143 188 188 SER SER A . n A 1 144 ASP 144 189 189 ASP ASP A . n A 1 145 SER 145 190 190 SER SER A . n A 1 146 TYR 146 191 191 TYR TYR A . n A 1 147 GLU 147 192 192 GLU GLU A . n A 1 148 THR 148 193 193 THR THR A . n A 1 149 GLU 149 194 194 GLU GLU A . n A 1 150 ASN 150 195 195 ASN ASN A . n A 1 151 GLN 151 196 196 GLN GLN A . n A 1 152 HIS 152 197 197 HIS HIS A . n A 1 153 TYR 153 198 198 TYR TYR A . n A 1 154 GLY 154 199 199 GLY GLY A . n A 1 155 ARG 155 200 200 ARG ARG A . n A 1 156 SER 156 201 201 SER SER A . n A 1 157 LEU 157 202 202 LEU LEU A . n A 1 158 THR 158 203 203 THR THR A . n A 1 159 LYS 159 204 204 LYS LYS A . n A 1 160 GLU 160 205 205 GLU GLU A . n A 1 161 THR 161 206 206 THR THR A . n A 1 162 ILE 162 207 207 ILE ILE A . n A 1 163 LYS 163 208 208 LYS LYS A . n A 1 164 ASP 164 209 209 ASP ASP A . n A 1 165 GLY 165 210 210 GLY GLY A . n A 1 166 VAL 166 211 211 VAL VAL A . n A 1 167 SER 167 212 212 SER SER A . n A 1 168 ARG 168 213 213 ARG ARG A . n A 1 169 PHE 169 214 214 PHE PHE A . n A 1 170 PHE 170 215 215 PHE PHE A . n A 1 171 HIS 171 216 216 HIS HIS A . n A 1 172 ASN 172 217 217 ASN ASN A . n A 1 173 GLY 173 218 218 GLY GLY A . n A 1 174 TYR 174 219 219 TYR TYR A . n A 1 175 CYS 175 220 220 CYS CYS A . n A 1 176 LEU 176 221 221 LEU LEU A . n A 1 177 ARG 177 222 222 ARG ARG A . n A 1 178 LYS 178 223 223 LYS LYS A . n A 1 179 ASP 179 224 224 ASP ASP A . n A 1 180 ALA 180 225 225 ALA ALA A . n A 1 181 VAL 181 226 226 VAL VAL A . n A 1 182 ALA 182 227 227 ALA ALA A . n A 1 183 ALA 183 228 228 ALA ALA A . n A 1 184 SER 184 229 229 SER SER A . n A 1 185 ILE 185 230 230 ILE ILE A . n A 1 186 GLN 186 231 231 GLN GLN A . n A 1 187 LYS 187 232 232 LYS LYS A . n A 1 188 ILE 188 233 233 ILE ILE A . n A 1 189 GLU 189 234 234 GLU GLU A . n A 1 190 LYS 190 235 235 LYS LYS A . n A 1 191 ILE 191 236 236 ILE ILE A . n A 1 192 LEU 192 237 237 LEU LEU A . n A 1 193 GLN 193 238 238 GLN GLN A . n A 1 194 TRP 194 239 239 TRP TRP A . n A 1 195 PHE 195 240 240 PHE PHE A . n A 1 196 GLU 196 241 241 GLU GLU A . n A 1 197 ASN 197 242 242 ASN ASN A . n A 1 198 GLN 198 243 243 GLN GLN A . n A 1 199 LYS 199 244 244 LYS LYS A . n A 1 200 GLN 200 245 245 GLN GLN A . n A 1 201 LEU 201 246 246 LEU LEU A . n A 1 202 ASN 202 247 247 ASN ASN A . n A 1 203 PHE 203 248 248 PHE PHE A . n A 1 204 TYR 204 249 249 TYR TYR A . n A 1 205 ALA 205 250 250 ALA ALA A . n A 1 206 SER 206 251 251 SER SER A . n A 1 207 SER 207 252 252 SER SER A . n A 1 208 LEU 208 253 253 LEU LEU A . n A 1 209 LEU 209 254 254 LEU LEU A . n A 1 210 PHE 210 255 255 PHE PHE A . n A 1 211 VAL 211 256 256 VAL VAL A . n A 1 212 TYR 212 257 257 TYR TYR A . n A 1 213 GLU 213 258 258 GLU GLU A . n A 1 214 GLY 214 259 259 GLY GLY A . n A 1 215 SER 215 260 260 SER SER A . n A 1 216 SER 216 371 ? ? ? A . n A 1 217 GLN 217 372 ? ? ? A . n A 1 218 GLY 218 373 ? ? ? A . n A 1 219 GLY 219 374 ? ? ? A . n A 1 220 SER 220 375 ? ? ? A . n A 1 221 GLY 221 376 376 GLY GLY A . n A 1 222 GLY 222 377 377 GLY GLY A . n A 1 223 GLU 223 378 378 GLU GLU A . n A 1 224 VAL 224 379 379 VAL VAL A . n A 1 225 GLU 225 380 380 GLU GLU A . n A 1 226 VAL 226 381 381 VAL VAL A . n A 1 227 ARG 227 382 382 ARG ARG A . n A 1 228 MET 228 383 383 MET MET A . n A 1 229 ILE 229 384 384 ILE ILE A . n A 1 230 ASP 230 385 385 ASP ASP A . n A 1 231 PHE 231 386 386 PHE PHE A . n A 1 232 ALA 232 387 387 ALA ALA A . n A 1 233 HIS 233 388 388 HIS HIS A . n A 1 234 VAL 234 389 389 VAL VAL A . n A 1 235 PHE 235 390 390 PHE PHE A . n A 1 236 PRO 236 391 391 PRO PRO A . n A 1 237 SER 237 392 392 SER SER A . n A 1 238 ASN 238 393 393 ASN ASN A . n A 1 239 THR 239 394 394 THR THR A . n A 1 240 ILE 240 395 395 ILE ILE A . n A 1 241 ASP 241 396 396 ASP ASP A . n A 1 242 GLU 242 397 397 GLU GLU A . n A 1 243 GLY 243 398 398 GLY GLY A . n A 1 244 TYR 244 399 399 TYR TYR A . n A 1 245 VAL 245 400 400 VAL VAL A . n A 1 246 TYR 246 401 401 TYR TYR A . n A 1 247 GLY 247 402 402 GLY GLY A . n A 1 248 LEU 248 403 403 LEU LEU A . n A 1 249 LYS 249 404 404 LYS LYS A . n A 1 250 HIS 250 405 405 HIS HIS A . n A 1 251 LEU 251 406 406 LEU LEU A . n A 1 252 ILE 252 407 407 ILE ILE A . n A 1 253 SER 253 408 408 SER SER A . n A 1 254 VAL 254 409 409 VAL VAL A . n A 1 255 LEU 255 410 410 LEU LEU A . n A 1 256 ARG 256 411 411 ARG ARG A . n A 1 257 SER 257 412 412 SER SER A . n A 1 258 ILE 258 413 413 ILE ILE A . n A 1 259 LEU 259 414 414 LEU LEU A . n A 1 260 ASP 260 415 415 ASP ASP A . n A 1 261 ASN 261 416 416 ASN ASN A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MYC 1 501 501 MYC MYC A . C 3 HOH 1 601 170 HOH HOH A . C 3 HOH 2 602 134 HOH HOH A . C 3 HOH 3 603 62 HOH HOH A . C 3 HOH 4 604 75 HOH HOH A . C 3 HOH 5 605 12 HOH HOH A . C 3 HOH 6 606 59 HOH HOH A . C 3 HOH 7 607 94 HOH HOH A . C 3 HOH 8 608 128 HOH HOH A . C 3 HOH 9 609 29 HOH HOH A . C 3 HOH 10 610 145 HOH HOH A . C 3 HOH 11 611 66 HOH HOH A . C 3 HOH 12 612 83 HOH HOH A . C 3 HOH 13 613 122 HOH HOH A . C 3 HOH 14 614 8 HOH HOH A . C 3 HOH 15 615 124 HOH HOH A . C 3 HOH 16 616 119 HOH HOH A . C 3 HOH 17 617 33 HOH HOH A . C 3 HOH 18 618 106 HOH HOH A . C 3 HOH 19 619 127 HOH HOH A . C 3 HOH 20 620 133 HOH HOH A . C 3 HOH 21 621 156 HOH HOH A . C 3 HOH 22 622 61 HOH HOH A . C 3 HOH 23 623 51 HOH HOH A . C 3 HOH 24 624 21 HOH HOH A . C 3 HOH 25 625 19 HOH HOH A . C 3 HOH 26 626 96 HOH HOH A . C 3 HOH 27 627 149 HOH HOH A . C 3 HOH 28 628 44 HOH HOH A . C 3 HOH 29 629 82 HOH HOH A . C 3 HOH 30 630 50 HOH HOH A . C 3 HOH 31 631 67 HOH HOH A . C 3 HOH 32 632 68 HOH HOH A . C 3 HOH 33 633 147 HOH HOH A . C 3 HOH 34 634 49 HOH HOH A . C 3 HOH 35 635 64 HOH HOH A . C 3 HOH 36 636 86 HOH HOH A . C 3 HOH 37 637 28 HOH HOH A . C 3 HOH 38 638 43 HOH HOH A . C 3 HOH 39 639 34 HOH HOH A . C 3 HOH 40 640 108 HOH HOH A . C 3 HOH 41 641 77 HOH HOH A . C 3 HOH 42 642 72 HOH HOH A . C 3 HOH 43 643 35 HOH HOH A . C 3 HOH 44 644 120 HOH HOH A . C 3 HOH 45 645 89 HOH HOH A . C 3 HOH 46 646 54 HOH HOH A . C 3 HOH 47 647 73 HOH HOH A . C 3 HOH 48 648 18 HOH HOH A . C 3 HOH 49 649 123 HOH HOH A . C 3 HOH 50 650 176 HOH HOH A . C 3 HOH 51 651 166 HOH HOH A . C 3 HOH 52 652 25 HOH HOH A . C 3 HOH 53 653 137 HOH HOH A . C 3 HOH 54 654 6 HOH HOH A . C 3 HOH 55 655 13 HOH HOH A . C 3 HOH 56 656 2 HOH HOH A . C 3 HOH 57 657 118 HOH HOH A . C 3 HOH 58 658 10 HOH HOH A . C 3 HOH 59 659 24 HOH HOH A . C 3 HOH 60 660 15 HOH HOH A . C 3 HOH 61 661 39 HOH HOH A . C 3 HOH 62 662 80 HOH HOH A . C 3 HOH 63 663 47 HOH HOH A . C 3 HOH 64 664 70 HOH HOH A . C 3 HOH 65 665 3 HOH HOH A . C 3 HOH 66 666 45 HOH HOH A . C 3 HOH 67 667 148 HOH HOH A . C 3 HOH 68 668 48 HOH HOH A . C 3 HOH 69 669 57 HOH HOH A . C 3 HOH 70 670 40 HOH HOH A . C 3 HOH 71 671 30 HOH HOH A . C 3 HOH 72 672 1 HOH HOH A . C 3 HOH 73 673 177 HOH HOH A . C 3 HOH 74 674 100 HOH HOH A . C 3 HOH 75 675 157 HOH HOH A . C 3 HOH 76 676 150 HOH HOH A . C 3 HOH 77 677 171 HOH HOH A . C 3 HOH 78 678 98 HOH HOH A . C 3 HOH 79 679 92 HOH HOH A . C 3 HOH 80 680 4 HOH HOH A . C 3 HOH 81 681 22 HOH HOH A . C 3 HOH 82 682 142 HOH HOH A . C 3 HOH 83 683 9 HOH HOH A . C 3 HOH 84 684 46 HOH HOH A . C 3 HOH 85 685 74 HOH HOH A . C 3 HOH 86 686 31 HOH HOH A . C 3 HOH 87 687 129 HOH HOH A . C 3 HOH 88 688 32 HOH HOH A . C 3 HOH 89 689 85 HOH HOH A . C 3 HOH 90 690 125 HOH HOH A . C 3 HOH 91 691 41 HOH HOH A . C 3 HOH 92 692 136 HOH HOH A . C 3 HOH 93 693 139 HOH HOH A . C 3 HOH 94 694 78 HOH HOH A . C 3 HOH 95 695 56 HOH HOH A . C 3 HOH 96 696 158 HOH HOH A . C 3 HOH 97 697 144 HOH HOH A . C 3 HOH 98 698 23 HOH HOH A . C 3 HOH 99 699 37 HOH HOH A . C 3 HOH 100 700 146 HOH HOH A . C 3 HOH 101 701 103 HOH HOH A . C 3 HOH 102 702 115 HOH HOH A . C 3 HOH 103 703 99 HOH HOH A . C 3 HOH 104 704 109 HOH HOH A . C 3 HOH 105 705 97 HOH HOH A . C 3 HOH 106 706 52 HOH HOH A . C 3 HOH 107 707 111 HOH HOH A . C 3 HOH 108 708 11 HOH HOH A . C 3 HOH 109 709 131 HOH HOH A . C 3 HOH 110 710 104 HOH HOH A . C 3 HOH 111 711 91 HOH HOH A . C 3 HOH 112 712 14 HOH HOH A . C 3 HOH 113 713 159 HOH HOH A . C 3 HOH 114 714 151 HOH HOH A . C 3 HOH 115 715 164 HOH HOH A . C 3 HOH 116 716 27 HOH HOH A . C 3 HOH 117 717 69 HOH HOH A . C 3 HOH 118 718 5 HOH HOH A . C 3 HOH 119 719 65 HOH HOH A . C 3 HOH 120 720 20 HOH HOH A . C 3 HOH 121 721 42 HOH HOH A . C 3 HOH 122 722 17 HOH HOH A . C 3 HOH 123 723 53 HOH HOH A . C 3 HOH 124 724 7 HOH HOH A . C 3 HOH 125 725 16 HOH HOH A . C 3 HOH 126 726 60 HOH HOH A . C 3 HOH 127 727 130 HOH HOH A . C 3 HOH 128 728 76 HOH HOH A . C 3 HOH 129 729 79 HOH HOH A . C 3 HOH 130 730 138 HOH HOH A . C 3 HOH 131 731 132 HOH HOH A . C 3 HOH 132 732 90 HOH HOH A . C 3 HOH 133 733 152 HOH HOH A . C 3 HOH 134 734 155 HOH HOH A . C 3 HOH 135 735 172 HOH HOH A . C 3 HOH 136 736 71 HOH HOH A . C 3 HOH 137 737 38 HOH HOH A . C 3 HOH 138 738 101 HOH HOH A . C 3 HOH 139 739 107 HOH HOH A . C 3 HOH 140 740 55 HOH HOH A . C 3 HOH 141 741 173 HOH HOH A . C 3 HOH 142 742 88 HOH HOH A . C 3 HOH 143 743 135 HOH HOH A . C 3 HOH 144 744 117 HOH HOH A . C 3 HOH 145 745 95 HOH HOH A . C 3 HOH 146 746 81 HOH HOH A . C 3 HOH 147 747 105 HOH HOH A . C 3 HOH 148 748 121 HOH HOH A . C 3 HOH 149 749 169 HOH HOH A . C 3 HOH 150 750 63 HOH HOH A . C 3 HOH 151 751 163 HOH HOH A . C 3 HOH 152 752 87 HOH HOH A . C 3 HOH 153 753 143 HOH HOH A . C 3 HOH 154 754 114 HOH HOH A . C 3 HOH 155 755 167 HOH HOH A . C 3 HOH 156 756 168 HOH HOH A . C 3 HOH 157 757 160 HOH HOH A . C 3 HOH 158 758 93 HOH HOH A . C 3 HOH 159 759 84 HOH HOH A . C 3 HOH 160 760 161 HOH HOH A . C 3 HOH 161 761 116 HOH HOH A . C 3 HOH 162 762 165 HOH HOH A . C 3 HOH 163 763 153 HOH HOH A . C 3 HOH 164 764 126 HOH HOH A . C 3 HOH 165 765 141 HOH HOH A . C 3 HOH 166 766 174 HOH HOH A . C 3 HOH 167 767 162 HOH HOH A . C 3 HOH 168 768 175 HOH HOH A . C 3 HOH 169 769 58 HOH HOH A . C 3 HOH 170 770 36 HOH HOH A . C 3 HOH 171 771 140 HOH HOH A . C 3 HOH 172 772 102 HOH HOH A . C 3 HOH 173 773 154 HOH HOH A . C 3 HOH 174 774 26 HOH HOH A . C 3 HOH 175 775 112 HOH HOH A . C 3 HOH 176 776 110 HOH HOH A . C 3 HOH 177 777 113 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2019-01-23 2 'Structure model' 1 1 2019-05-01 3 'Structure model' 1 2 2019-12-18 4 'Structure model' 1 3 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Author supporting evidence' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' pdbx_audit_support 4 4 'Structure model' chem_comp_atom 5 4 'Structure model' chem_comp_bond 6 4 'Structure model' database_2 7 4 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.journal_volume' 2 2 'Structure model' '_citation.page_first' 3 2 'Structure model' '_citation.page_last' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.name' 6 3 'Structure model' '_pdbx_audit_support.funding_organization' 7 4 'Structure model' '_database_2.pdbx_DOI' 8 4 'Structure model' '_database_2.pdbx_database_accession' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? REFMAC ? ? ? 5.8.0189 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 67 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 THR _pdbx_validate_close_contact.auth_seq_id_2 72 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 623 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 623 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 2_555 _pdbx_validate_symm_contact.dist 2.15 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 HIS A 68 ? ? 62.68 174.79 2 1 TYR A 168 ? ? -161.06 89.14 3 1 ASP A 385 ? ? 72.90 84.92 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PRO _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 69 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ASP _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 70 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -143.37 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 46 ? A GLY 1 2 1 Y 1 A SER 47 ? A SER 2 3 1 Y 1 A PHE 48 ? A PHE 3 4 1 Y 1 A THR 49 ? A THR 4 5 1 Y 1 A SER 50 ? A SER 5 6 1 Y 1 A HIS 51 ? A HIS 6 7 1 Y 1 A GLN 52 ? A GLN 7 8 1 Y 1 A VAL 53 ? A VAL 8 9 1 Y 1 A ALA 54 ? A ALA 9 10 1 Y 1 A GLY 55 ? A GLY 10 11 1 Y 1 A HIS 56 ? A HIS 11 12 1 Y 1 A MET 57 ? A MET 12 13 1 Y 1 A TYR 58 ? A TYR 13 14 1 Y 1 A GLY 59 ? A GLY 14 15 1 Y 1 A LYS 60 ? A LYS 15 16 1 Y 1 A ASP 61 ? A ASP 16 17 1 Y 1 A LYS 62 ? A LYS 17 18 1 Y 1 A VAL 63 ? A VAL 18 19 1 Y 1 A GLY 64 ? A GLY 19 20 1 Y 1 A SER 371 ? A SER 216 21 1 Y 1 A GLN 372 ? A GLN 217 22 1 Y 1 A GLY 373 ? A GLY 218 23 1 Y 1 A GLY 374 ? A GLY 219 24 1 Y 1 A SER 375 ? A SER 220 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 HOH O O N N 158 HOH H1 H N N 159 HOH H2 H N N 160 ILE N N N N 161 ILE CA C N S 162 ILE C C N N 163 ILE O O N N 164 ILE CB C N S 165 ILE CG1 C N N 166 ILE CG2 C N N 167 ILE CD1 C N N 168 ILE OXT O N N 169 ILE H H N N 170 ILE H2 H N N 171 ILE HA H N N 172 ILE HB H N N 173 ILE HG12 H N N 174 ILE HG13 H N N 175 ILE HG21 H N N 176 ILE HG22 H N N 177 ILE HG23 H N N 178 ILE HD11 H N N 179 ILE HD12 H N N 180 ILE HD13 H N N 181 ILE HXT H N N 182 LEU N N N N 183 LEU CA C N S 184 LEU C C N N 185 LEU O O N N 186 LEU CB C N N 187 LEU CG C N N 188 LEU CD1 C N N 189 LEU CD2 C N N 190 LEU OXT O N N 191 LEU H H N N 192 LEU H2 H N N 193 LEU HA H N N 194 LEU HB2 H N N 195 LEU HB3 H N N 196 LEU HG H N N 197 LEU HD11 H N N 198 LEU HD12 H N N 199 LEU HD13 H N N 200 LEU HD21 H N N 201 LEU HD22 H N N 202 LEU HD23 H N N 203 LEU HXT H N N 204 LYS N N N N 205 LYS CA C N S 206 LYS C C N N 207 LYS O O N N 208 LYS CB C N N 209 LYS CG C N N 210 LYS CD C N N 211 LYS CE C N N 212 LYS NZ N N N 213 LYS OXT O N N 214 LYS H H N N 215 LYS H2 H N N 216 LYS HA H N N 217 LYS HB2 H N N 218 LYS HB3 H N N 219 LYS HG2 H N N 220 LYS HG3 H N N 221 LYS HD2 H N N 222 LYS HD3 H N N 223 LYS HE2 H N N 224 LYS HE3 H N N 225 LYS HZ1 H N N 226 LYS HZ2 H N N 227 LYS HZ3 H N N 228 LYS HXT H N N 229 MET N N N N 230 MET CA C N S 231 MET C C N N 232 MET O O N N 233 MET CB C N N 234 MET CG C N N 235 MET SD S N N 236 MET CE C N N 237 MET OXT O N N 238 MET H H N N 239 MET H2 H N N 240 MET HA H N N 241 MET HB2 H N N 242 MET HB3 H N N 243 MET HG2 H N N 244 MET HG3 H N N 245 MET HE1 H N N 246 MET HE2 H N N 247 MET HE3 H N N 248 MET HXT H N N 249 MYC C1 C Y N 250 MYC C2 C Y N 251 MYC C3 C Y N 252 MYC C4 C Y N 253 MYC C5 C Y N 254 MYC C6 C Y N 255 MYC C9 C Y N 256 MYC C10 C Y N 257 MYC C11 C Y N 258 MYC C14 C Y N 259 MYC C15 C Y N 260 MYC C16 C Y N 261 MYC C17 C Y N 262 MYC C18 C Y N 263 MYC C19 C Y N 264 MYC O12 O Y N 265 MYC O13 O N N 266 MYC O23 O N N 267 MYC O24 O N N 268 MYC O25 O N N 269 MYC O27 O N N 270 MYC O29 O N N 271 MYC O30 O N N 272 MYC H1 H N N 273 MYC H5 H N N 274 MYC H15 H N N 275 MYC H19 H N N 276 MYC HO3 H N N 277 MYC HO4 H N N 278 MYC HO5 H N N 279 MYC HO7 H N N 280 MYC HO9 H N N 281 MYC HO0 H N N 282 PHE N N N N 283 PHE CA C N S 284 PHE C C N N 285 PHE O O N N 286 PHE CB C N N 287 PHE CG C Y N 288 PHE CD1 C Y N 289 PHE CD2 C Y N 290 PHE CE1 C Y N 291 PHE CE2 C Y N 292 PHE CZ C Y N 293 PHE OXT O N N 294 PHE H H N N 295 PHE H2 H N N 296 PHE HA H N N 297 PHE HB2 H N N 298 PHE HB3 H N N 299 PHE HD1 H N N 300 PHE HD2 H N N 301 PHE HE1 H N N 302 PHE HE2 H N N 303 PHE HZ H N N 304 PHE HXT H N N 305 PRO N N N N 306 PRO CA C N S 307 PRO C C N N 308 PRO O O N N 309 PRO CB C N N 310 PRO CG C N N 311 PRO CD C N N 312 PRO OXT O N N 313 PRO H H N N 314 PRO HA H N N 315 PRO HB2 H N N 316 PRO HB3 H N N 317 PRO HG2 H N N 318 PRO HG3 H N N 319 PRO HD2 H N N 320 PRO HD3 H N N 321 PRO HXT H N N 322 SER N N N N 323 SER CA C N S 324 SER C C N N 325 SER O O N N 326 SER CB C N N 327 SER OG O N N 328 SER OXT O N N 329 SER H H N N 330 SER H2 H N N 331 SER HA H N N 332 SER HB2 H N N 333 SER HB3 H N N 334 SER HG H N N 335 SER HXT H N N 336 THR N N N N 337 THR CA C N S 338 THR C C N N 339 THR O O N N 340 THR CB C N R 341 THR OG1 O N N 342 THR CG2 C N N 343 THR OXT O N N 344 THR H H N N 345 THR H2 H N N 346 THR HA H N N 347 THR HB H N N 348 THR HG1 H N N 349 THR HG21 H N N 350 THR HG22 H N N 351 THR HG23 H N N 352 THR HXT H N N 353 TRP N N N N 354 TRP CA C N S 355 TRP C C N N 356 TRP O O N N 357 TRP CB C N N 358 TRP CG C Y N 359 TRP CD1 C Y N 360 TRP CD2 C Y N 361 TRP NE1 N Y N 362 TRP CE2 C Y N 363 TRP CE3 C Y N 364 TRP CZ2 C Y N 365 TRP CZ3 C Y N 366 TRP CH2 C Y N 367 TRP OXT O N N 368 TRP H H N N 369 TRP H2 H N N 370 TRP HA H N N 371 TRP HB2 H N N 372 TRP HB3 H N N 373 TRP HD1 H N N 374 TRP HE1 H N N 375 TRP HE3 H N N 376 TRP HZ2 H N N 377 TRP HZ3 H N N 378 TRP HH2 H N N 379 TRP HXT H N N 380 TYR N N N N 381 TYR CA C N S 382 TYR C C N N 383 TYR O O N N 384 TYR CB C N N 385 TYR CG C Y N 386 TYR CD1 C Y N 387 TYR CD2 C Y N 388 TYR CE1 C Y N 389 TYR CE2 C Y N 390 TYR CZ C Y N 391 TYR OH O N N 392 TYR OXT O N N 393 TYR H H N N 394 TYR H2 H N N 395 TYR HA H N N 396 TYR HB2 H N N 397 TYR HB3 H N N 398 TYR HD1 H N N 399 TYR HD2 H N N 400 TYR HE1 H N N 401 TYR HE2 H N N 402 TYR HH H N N 403 TYR HXT H N N 404 VAL N N N N 405 VAL CA C N S 406 VAL C C N N 407 VAL O O N N 408 VAL CB C N N 409 VAL CG1 C N N 410 VAL CG2 C N N 411 VAL OXT O N N 412 VAL H H N N 413 VAL H2 H N N 414 VAL HA H N N 415 VAL HB H N N 416 VAL HG11 H N N 417 VAL HG12 H N N 418 VAL HG13 H N N 419 VAL HG21 H N N 420 VAL HG22 H N N 421 VAL HG23 H N N 422 VAL HXT H N N 423 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 ILE N CA sing N N 152 ILE N H sing N N 153 ILE N H2 sing N N 154 ILE CA C sing N N 155 ILE CA CB sing N N 156 ILE CA HA sing N N 157 ILE C O doub N N 158 ILE C OXT sing N N 159 ILE CB CG1 sing N N 160 ILE CB CG2 sing N N 161 ILE CB HB sing N N 162 ILE CG1 CD1 sing N N 163 ILE CG1 HG12 sing N N 164 ILE CG1 HG13 sing N N 165 ILE CG2 HG21 sing N N 166 ILE CG2 HG22 sing N N 167 ILE CG2 HG23 sing N N 168 ILE CD1 HD11 sing N N 169 ILE CD1 HD12 sing N N 170 ILE CD1 HD13 sing N N 171 ILE OXT HXT sing N N 172 LEU N CA sing N N 173 LEU N H sing N N 174 LEU N H2 sing N N 175 LEU CA C sing N N 176 LEU CA CB sing N N 177 LEU CA HA sing N N 178 LEU C O doub N N 179 LEU C OXT sing N N 180 LEU CB CG sing N N 181 LEU CB HB2 sing N N 182 LEU CB HB3 sing N N 183 LEU CG CD1 sing N N 184 LEU CG CD2 sing N N 185 LEU CG HG sing N N 186 LEU CD1 HD11 sing N N 187 LEU CD1 HD12 sing N N 188 LEU CD1 HD13 sing N N 189 LEU CD2 HD21 sing N N 190 LEU CD2 HD22 sing N N 191 LEU CD2 HD23 sing N N 192 LEU OXT HXT sing N N 193 LYS N CA sing N N 194 LYS N H sing N N 195 LYS N H2 sing N N 196 LYS CA C sing N N 197 LYS CA CB sing N N 198 LYS CA HA sing N N 199 LYS C O doub N N 200 LYS C OXT sing N N 201 LYS CB CG sing N N 202 LYS CB HB2 sing N N 203 LYS CB HB3 sing N N 204 LYS CG CD sing N N 205 LYS CG HG2 sing N N 206 LYS CG HG3 sing N N 207 LYS CD CE sing N N 208 LYS CD HD2 sing N N 209 LYS CD HD3 sing N N 210 LYS CE NZ sing N N 211 LYS CE HE2 sing N N 212 LYS CE HE3 sing N N 213 LYS NZ HZ1 sing N N 214 LYS NZ HZ2 sing N N 215 LYS NZ HZ3 sing N N 216 LYS OXT HXT sing N N 217 MET N CA sing N N 218 MET N H sing N N 219 MET N H2 sing N N 220 MET CA C sing N N 221 MET CA CB sing N N 222 MET CA HA sing N N 223 MET C O doub N N 224 MET C OXT sing N N 225 MET CB CG sing N N 226 MET CB HB2 sing N N 227 MET CB HB3 sing N N 228 MET CG SD sing N N 229 MET CG HG2 sing N N 230 MET CG HG3 sing N N 231 MET SD CE sing N N 232 MET CE HE1 sing N N 233 MET CE HE2 sing N N 234 MET CE HE3 sing N N 235 MET OXT HXT sing N N 236 MYC C1 C2 doub Y N 237 MYC C1 C6 sing Y N 238 MYC C1 H1 sing N N 239 MYC C2 C3 sing Y N 240 MYC C2 O30 sing N N 241 MYC C3 C4 doub Y N 242 MYC C3 C9 sing Y N 243 MYC C4 C5 sing Y N 244 MYC C4 O12 sing Y N 245 MYC C5 C6 doub Y N 246 MYC C5 H5 sing N N 247 MYC C6 O29 sing N N 248 MYC C9 C10 sing Y N 249 MYC C9 O13 doub N N 250 MYC C10 C11 doub Y N 251 MYC C10 O27 sing N N 252 MYC C11 C14 sing Y N 253 MYC C11 O12 sing Y N 254 MYC C14 C15 doub Y N 255 MYC C14 C19 sing Y N 256 MYC C15 C16 sing Y N 257 MYC C15 H15 sing N N 258 MYC C16 C17 doub Y N 259 MYC C16 O25 sing N N 260 MYC C17 C18 sing Y N 261 MYC C17 O24 sing N N 262 MYC C18 C19 doub Y N 263 MYC C18 O23 sing N N 264 MYC C19 H19 sing N N 265 MYC O23 HO3 sing N N 266 MYC O24 HO4 sing N N 267 MYC O25 HO5 sing N N 268 MYC O27 HO7 sing N N 269 MYC O29 HO9 sing N N 270 MYC O30 HO0 sing N N 271 PHE N CA sing N N 272 PHE N H sing N N 273 PHE N H2 sing N N 274 PHE CA C sing N N 275 PHE CA CB sing N N 276 PHE CA HA sing N N 277 PHE C O doub N N 278 PHE C OXT sing N N 279 PHE CB CG sing N N 280 PHE CB HB2 sing N N 281 PHE CB HB3 sing N N 282 PHE CG CD1 doub Y N 283 PHE CG CD2 sing Y N 284 PHE CD1 CE1 sing Y N 285 PHE CD1 HD1 sing N N 286 PHE CD2 CE2 doub Y N 287 PHE CD2 HD2 sing N N 288 PHE CE1 CZ doub Y N 289 PHE CE1 HE1 sing N N 290 PHE CE2 CZ sing Y N 291 PHE CE2 HE2 sing N N 292 PHE CZ HZ sing N N 293 PHE OXT HXT sing N N 294 PRO N CA sing N N 295 PRO N CD sing N N 296 PRO N H sing N N 297 PRO CA C sing N N 298 PRO CA CB sing N N 299 PRO CA HA sing N N 300 PRO C O doub N N 301 PRO C OXT sing N N 302 PRO CB CG sing N N 303 PRO CB HB2 sing N N 304 PRO CB HB3 sing N N 305 PRO CG CD sing N N 306 PRO CG HG2 sing N N 307 PRO CG HG3 sing N N 308 PRO CD HD2 sing N N 309 PRO CD HD3 sing N N 310 PRO OXT HXT sing N N 311 SER N CA sing N N 312 SER N H sing N N 313 SER N H2 sing N N 314 SER CA C sing N N 315 SER CA CB sing N N 316 SER CA HA sing N N 317 SER C O doub N N 318 SER C OXT sing N N 319 SER CB OG sing N N 320 SER CB HB2 sing N N 321 SER CB HB3 sing N N 322 SER OG HG sing N N 323 SER OXT HXT sing N N 324 THR N CA sing N N 325 THR N H sing N N 326 THR N H2 sing N N 327 THR CA C sing N N 328 THR CA CB sing N N 329 THR CA HA sing N N 330 THR C O doub N N 331 THR C OXT sing N N 332 THR CB OG1 sing N N 333 THR CB CG2 sing N N 334 THR CB HB sing N N 335 THR OG1 HG1 sing N N 336 THR CG2 HG21 sing N N 337 THR CG2 HG22 sing N N 338 THR CG2 HG23 sing N N 339 THR OXT HXT sing N N 340 TRP N CA sing N N 341 TRP N H sing N N 342 TRP N H2 sing N N 343 TRP CA C sing N N 344 TRP CA CB sing N N 345 TRP CA HA sing N N 346 TRP C O doub N N 347 TRP C OXT sing N N 348 TRP CB CG sing N N 349 TRP CB HB2 sing N N 350 TRP CB HB3 sing N N 351 TRP CG CD1 doub Y N 352 TRP CG CD2 sing Y N 353 TRP CD1 NE1 sing Y N 354 TRP CD1 HD1 sing N N 355 TRP CD2 CE2 doub Y N 356 TRP CD2 CE3 sing Y N 357 TRP NE1 CE2 sing Y N 358 TRP NE1 HE1 sing N N 359 TRP CE2 CZ2 sing Y N 360 TRP CE3 CZ3 doub Y N 361 TRP CE3 HE3 sing N N 362 TRP CZ2 CH2 doub Y N 363 TRP CZ2 HZ2 sing N N 364 TRP CZ3 CH2 sing Y N 365 TRP CZ3 HZ3 sing N N 366 TRP CH2 HH2 sing N N 367 TRP OXT HXT sing N N 368 TYR N CA sing N N 369 TYR N H sing N N 370 TYR N H2 sing N N 371 TYR CA C sing N N 372 TYR CA CB sing N N 373 TYR CA HA sing N N 374 TYR C O doub N N 375 TYR C OXT sing N N 376 TYR CB CG sing N N 377 TYR CB HB2 sing N N 378 TYR CB HB3 sing N N 379 TYR CG CD1 doub Y N 380 TYR CG CD2 sing Y N 381 TYR CD1 CE1 sing Y N 382 TYR CD1 HD1 sing N N 383 TYR CD2 CE2 doub Y N 384 TYR CD2 HD2 sing N N 385 TYR CE1 CZ doub Y N 386 TYR CE1 HE1 sing N N 387 TYR CE2 CZ sing Y N 388 TYR CE2 HE2 sing N N 389 TYR CZ OH sing N N 390 TYR OH HH sing N N 391 TYR OXT HXT sing N N 392 VAL N CA sing N N 393 VAL N H sing N N 394 VAL N H2 sing N N 395 VAL CA C sing N N 396 VAL CA CB sing N N 397 VAL CA HA sing N N 398 VAL C O doub N N 399 VAL C OXT sing N N 400 VAL CB CG1 sing N N 401 VAL CB CG2 sing N N 402 VAL CB HB sing N N 403 VAL CG1 HG11 sing N N 404 VAL CG1 HG12 sing N N 405 VAL CG1 HG13 sing N N 406 VAL CG2 HG21 sing N N 407 VAL CG2 HG22 sing N N 408 VAL CG2 HG23 sing N N 409 VAL OXT HXT sing N N 410 # _pdbx_audit_support.funding_organization 'National Institutes of Health/National Institute of Environmental Health Sciences (NIH/NIEHS)' _pdbx_audit_support.country 'United States' _pdbx_audit_support.grant_number 1ZIAES080046-29 _pdbx_audit_support.ordinal 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3,5,7-TRIHYDROXY-2-(3,4,5-TRIHYDROXYPHENYL)-4H-CHROMEN-4-ONE' MYC 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5W2G _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'gel filtration' _pdbx_struct_assembly_auth_evidence.details ? #