HEADER HYDROLASE 22-AUG-18 6M8N TITLE ENDO-FUCOIDAN HYDROLASE P5AFCNA FROM GLYCOSIDE HYDROLASE FAMILY 107 COMPND MOL_ID: 1; COMPND 2 MOLECULE: P5AFCNA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSYCHROMONAS; SOURCE 3 ORGANISM_TAXID: 67572; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FUCAN, FUCOIDAN, GLYCOSIDE HYDROLASE, RETAINING MECHANISM, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.BORASTON,C.J.VICKERS,K.ABE,O.SALAMA-ALBER REVDAT 4 13-MAR-24 6M8N 1 REMARK REVDAT 3 05-DEC-18 6M8N 1 JRNL REVDAT 2 17-OCT-18 6M8N 1 JRNL REVDAT 1 03-OCT-18 6M8N 0 JRNL AUTH C.VICKERS,F.LIU,K.ABE,O.SALAMA-ALBER,M.JENKINS, JRNL AUTH 2 C.M.K.SPRINGATE,J.E.BURKE,S.G.WITHERS,A.B.BORASTON JRNL TITL ENDO-FUCOIDAN HYDROLASES FROM GLYCOSIDE HYDROLASE FAMILY 107 JRNL TITL 2 (GH107) DISPLAY STRUCTURAL AND MECHANISTIC SIMILARITIES TO JRNL TITL 3 ALPHA-L-FUCOSIDASES FROM GH29. JRNL REF J. BIOL. CHEM. V. 293 18296 2018 JRNL REFN ESSN 1083-351X JRNL PMID 30282808 JRNL DOI 10.1074/JBC.RA118.005134 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 72719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5339 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 289 REMARK 3 BIN FREE R VALUE : 0.2440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2883 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 521 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.10000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.33000 REMARK 3 B12 (A**2) : -0.05000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.060 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.062 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.039 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.081 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2969 ; 0.015 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2478 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4056 ; 1.785 ; 1.654 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5782 ; 1.133 ; 1.642 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 6.333 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 161 ;31.351 ;23.230 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 434 ;11.396 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;16.699 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 386 ; 0.098 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3423 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 593 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 6M8N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236206. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 R 200K-A REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 77250 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM MALONATE PH 6-7, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.22800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 64.45600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 64.45600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.22800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 976 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1107 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 GLY A -8 REMARK 465 SER A -7 REMARK 465 SER A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 SER A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 LEU A 4 REMARK 465 VAL A 5 REMARK 465 PRO A 6 REMARK 465 ARG A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 GLY A 12 REMARK 465 SER A 13 REMARK 465 SER A 14 REMARK 465 SER A 15 REMARK 465 ASP A 16 REMARK 465 GLU A 17 REMARK 465 VAL A 18 REMARK 465 GLU A 19 REMARK 465 SER A 20 REMARK 465 THR A 21 REMARK 465 ASN A 22 REMARK 465 THR A 23 REMARK 465 THR A 24 REMARK 465 ASP A 25 REMARK 465 SER A 26 REMARK 465 TYR A 27 REMARK 465 ASN A 28 REMARK 465 ILE A 29 REMARK 465 ASN A 30 REMARK 465 ASN A 31 REMARK 465 THR A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 THR A 35 REMARK 465 GLU A 403 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 121 CG CD OE1 OE2 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 ARG A 204 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ASN A 239 CG OD1 ND2 REMARK 470 ASP A 251 CG OD1 OD2 REMARK 470 ASP A 252 CG OD1 OD2 REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 GLU A 301 CG CD OE1 OE2 REMARK 470 GLU A 391 CG CD OE1 OE2 REMARK 470 LYS A 394 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 918 O HOH A 952 1.80 REMARK 500 O HOH A 885 O HOH A 918 2.03 REMARK 500 O HOH A 992 O HOH A 1115 2.06 REMARK 500 O HOH A 646 O HOH A 1069 2.07 REMARK 500 O HOH A 641 O HOH A 1038 2.10 REMARK 500 O HOH A 977 O HOH A 1085 2.11 REMARK 500 O HOH A 605 O HOH A 987 2.11 REMARK 500 O HOH A 606 O HOH A 1089 2.13 REMARK 500 O HOH A 614 O HOH A 1021 2.16 REMARK 500 O HOH A 1069 O HOH A 1098 2.17 REMARK 500 O HOH A 857 O HOH A 1109 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 975 O HOH A 1016 5554 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 146 CA SER A 146 CB 0.097 REMARK 500 GLU A 241 CD GLU A 241 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 116 CG - SD - CE ANGL. DEV. = -19.0 DEGREES REMARK 500 ARG A 181 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG A 218 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 88 -157.66 -132.59 REMARK 500 ARG A 102 -72.03 -104.03 REMARK 500 TYR A 230 -72.93 -84.14 REMARK 500 ASP A 251 67.93 39.85 REMARK 500 TYR A 294 -64.71 -126.55 REMARK 500 SER A 324 148.75 -173.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 155 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MLI A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 502 DBREF 6M8N A -9 403 PDB 6M8N 6M8N -9 403 SEQRES 1 A 413 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 413 LEU VAL PRO ARG GLY SER HIS MET GLY SER SER SER ASP SEQRES 3 A 413 GLU VAL GLU SER THR ASN THR THR ASP SER TYR ASN ILE SEQRES 4 A 413 ASN ASN THR GLU ALA THR GLY ILE GLU TYR ASN ALA SER SEQRES 5 A 413 TRP MET ALA GLY THR TRP GLY ILE THR GLN ARG VAL ASP SEQRES 6 A 413 GLY GLY TYR LYS LEU ASP ASN SER ALA ASP SER SER ASN SEQRES 7 A 413 TRP GLN ALA GLY ALA GLU GLU ILE VAL THR ASN ILE PRO SEQRES 8 A 413 ALA ALA GLU TYR VAL ILE THR SER PHE THR HIS PRO ALA SEQRES 9 A 413 HIS GLY HIS LEU PHE THR LEU ARG THR ASN ASN ASN VAL SEQRES 10 A 413 ASP VAL SER ALA ILE HIS PRO ASP MET VAL PRO THR LEU SEQRES 11 A 413 GLU ASN GLU LYS ILE ILE LEU ASP VAL ILE ASN ILE TYR SEQRES 12 A 413 ARG ALA ALA GLY LYS LYS VAL ILE LEU TYR LEU ASN SER SEQRES 13 A 413 ALA GLY PRO SER MET ALA GLU GLU ARG GLY ASP THR ASP SEQRES 14 A 413 ILE GLN ALA ALA TRP ASP GLU TYR TYR ILE ASN GLU TRP SEQRES 15 A 413 ASP GLY ASP GLU ALA ALA ALA TRP ARG ASN LEU ALA ARG SEQRES 16 A 413 GLY TYR VAL GLU ARG PHE ASP GLY LEU VAL ASP GLY TYR SEQRES 17 A 413 TRP LEU ASP ASN SER ARG ASN LEU PRO GLY GLU VAL SER SEQRES 18 A 413 ASP PHE VAL ALA MET LEU ARG SER VAL ASP PRO GLU LEU SEQRES 19 A 413 THR ILE ALA VAL ASN TYR ASP GLN HIS TYR PHE THR ASP SEQRES 20 A 413 ASP ASN GLY GLU TYR LEU TYR VAL ASP SER ASP GLY LEU SEQRES 21 A 413 ASP ASP GLU ASP GLU SER ASP TYR LYS ILE VAL LYS HIS SEQRES 22 A 413 VAL VAL THR ASN GLU TYR MET ASP PHE THR ASN GLY HIS SEQRES 23 A 413 VAL THR PRO LEU GLY ARG GLY ALA PRO PRO ASN SER TRP SEQRES 24 A 413 ALA TYR GLU GLU TYR THR ILE PRO ASP MET ILE GLU VAL SEQRES 25 A 413 PRO TRP GLU THR TYR ASP GLY SER LYS TYR ALA LEU LYS SEQRES 26 A 413 HIS GLY TRP PHE PRO ILE ARG ASN SER TRP SER GLY SER SEQRES 27 A 413 LYS ALA GLU LEU MET PHE ASP VAL GLU GLN ALA TYR ARG SEQRES 28 A 413 PHE VAL ARG THR VAL THR ASP GLY GLY ALA ALA MET THR SEQRES 29 A 413 TRP SER THR THR GLN ASP ASN GLY TYR MET THR ALA ASP SEQRES 30 A 413 GLU MET SER ILE MET ILE GLU ILE SER ASN ARG MET THR SEQRES 31 A 413 GLN THR PRO LYS PRO ASP TYR SER VAL TYR GLU ARG PRO SEQRES 32 A 413 LYS GLY ALA TYR LEU VAL SER GLU ILE GLU HET MLI A 501 7 HET CA A 502 1 HETNAM MLI MALONATE ION HETNAM CA CALCIUM ION FORMUL 2 MLI C3 H2 O4 2- FORMUL 3 CA CA 2+ FORMUL 4 HOH *521(H2 O) HELIX 1 AA1 TYR A 39 ALA A 45 5 7 HELIX 2 AA2 GLY A 56 ALA A 64 1 9 HELIX 3 AA3 ASP A 65 SER A 67 5 3 HELIX 4 AA4 ASN A 68 ILE A 80 1 13 HELIX 5 AA5 ASP A 108 HIS A 113 1 6 HELIX 6 AA6 PRO A 114 VAL A 117 5 4 HELIX 7 AA7 THR A 119 ALA A 136 1 18 HELIX 8 AA8 ALA A 147 GLY A 156 5 10 HELIX 9 AA9 ASP A 157 TRP A 172 1 16 HELIX 10 AB1 ASP A 175 ASP A 192 1 18 HELIX 11 AB2 ASN A 202 LEU A 206 5 5 HELIX 12 AB3 GLU A 209 ASP A 221 1 13 HELIX 13 AB4 PRO A 279 GLY A 283 5 5 HELIX 14 AB5 SER A 288 TYR A 294 1 7 HELIX 15 AB6 TYR A 294 VAL A 302 1 9 HELIX 16 AB7 ASP A 335 GLY A 349 1 15 HELIX 17 AB8 THR A 365 THR A 380 1 16 HELIX 18 AB9 SER A 400 ILE A 402 5 3 SHEET 1 AA1 7 THR A 225 VAL A 228 0 SHEET 2 AA1 7 GLY A 197 ASP A 201 1 N LEU A 200 O ALA A 227 SHEET 3 AA1 7 LYS A 139 ASN A 145 1 N LEU A 144 O TRP A 199 SHEET 4 AA1 7 TYR A 85 SER A 89 1 N THR A 88 O TYR A 143 SHEET 5 AA1 7 TRP A 48 THR A 51 1 N ILE A 50 O ILE A 87 SHEET 6 AA1 7 ALA A 352 SER A 356 1 O TRP A 355 N GLY A 49 SHEET 7 AA1 7 HIS A 316 PRO A 320 1 N PHE A 319 O SER A 356 SHEET 1 AA2 2 THR A 91 HIS A 92 0 SHEET 2 AA2 2 HIS A 95 PHE A 99 -1 O LEU A 98 N HIS A 92 SHEET 1 AA3 2 HIS A 233 TYR A 234 0 SHEET 2 AA3 2 VAL A 261 LYS A 262 -1 O LYS A 262 N HIS A 233 SHEET 1 AA4 3 TYR A 258 LYS A 259 0 SHEET 2 AA4 3 TYR A 244 SER A 247 -1 N VAL A 245 O TYR A 258 SHEET 3 AA4 3 TYR A 397 LEU A 398 -1 O TYR A 397 N ASP A 246 SHEET 1 AA5 2 TRP A 304 THR A 306 0 SHEET 2 AA5 2 TYR A 312 LEU A 314 -1 O ALA A 313 N GLU A 305 SHEET 1 AA6 2 GLN A 359 ASP A 360 0 SHEET 2 AA6 2 TYR A 363 MET A 364 -1 O TYR A 363 N ASP A 360 LINK CA CA A 502 O HOH A 883 1555 1555 3.03 CISPEP 1 THR A 382 PRO A 383 0 -7.76 SITE 1 AC1 8 ARG A 53 PRO A 93 HIS A 276 TRP A 318 SITE 2 AC1 8 TRP A 325 HOH A 662 HOH A 735 HOH A 859 SITE 1 AC2 3 LYS A 259 ARG A 282 HOH A 883 CRYST1 97.455 97.455 96.684 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010261 0.005924 0.000000 0.00000 SCALE2 0.000000 0.011849 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010343 0.00000