HEADER LYASE 22-AUG-18 6M8U TITLE CRYSTAL STRUCTURE OF UBIX-LIKE FMN PRENYLTRANSFERASE AF1214 FROM TITLE 2 ARCHAEOGLOBUS FULGIDUS, PRENYLATED-FMN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN PRENYLTRANSFERASE UBIX; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS (STRAIN ATCC 49558 / VC- SOURCE 3 16 / DSM 4304 / JCM 9628 / NBRC 100126); SOURCE 4 ORGANISM_TAXID: 224325; SOURCE 5 STRAIN: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126; SOURCE 6 GENE: UBIX, AF_1214; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS FMN BINDING, UBIX, PRENYL TRANSFERASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,A.KHUSNUTIDINOVA,Z.WAWRZAK,A.F.YAKUNIN, AUTHOR 2 A.SAVCHENKO REVDAT 2 11-OCT-23 6M8U 1 COMPND HETNAM REVDAT 1 26-FEB-20 6M8U 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF UBIX-LIKE FMN PRENYLTRANSFERASE AF1214 JRNL TITL 2 FROM ARCHAEOGLOBUS FULGIDUS, PRENYLATED-FMN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 3 NUMBER OF REFLECTIONS : 14662 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.5003 - 3.7951 0.99 2876 162 0.1470 0.1631 REMARK 3 2 3.7951 - 3.0134 0.97 2825 153 0.1517 0.2001 REMARK 3 3 3.0134 - 2.6328 0.98 2820 160 0.1614 0.2029 REMARK 3 4 2.6328 - 2.3922 0.97 2852 145 0.1593 0.1961 REMARK 3 5 2.3922 - 2.2208 0.86 2541 128 0.1957 0.2517 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1484 REMARK 3 ANGLE : 1.410 2020 REMARK 3 CHIRALITY : 0.063 230 REMARK 3 PLANARITY : 0.023 250 REMARK 3 DIHEDRAL : 18.806 551 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:35) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7137 -33.3163 1.3349 REMARK 3 T TENSOR REMARK 3 T11: 0.3148 T22: 0.1435 REMARK 3 T33: 0.3840 T12: -0.3339 REMARK 3 T13: -0.0694 T23: 0.0532 REMARK 3 L TENSOR REMARK 3 L11: 1.4258 L22: 0.3778 REMARK 3 L33: 0.8665 L12: -0.3214 REMARK 3 L13: 0.2608 L23: -0.1120 REMARK 3 S TENSOR REMARK 3 S11: 0.3462 S12: -0.6060 S13: -0.7410 REMARK 3 S21: 0.3651 S22: -0.1658 S23: 0.4675 REMARK 3 S31: 0.5241 S32: -0.3517 S33: 0.3067 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 36:50) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9702 -37.8241 -12.4177 REMARK 3 T TENSOR REMARK 3 T11: 0.5215 T22: 0.2862 REMARK 3 T33: 0.6801 T12: 0.0668 REMARK 3 T13: -0.2491 T23: -0.1731 REMARK 3 L TENSOR REMARK 3 L11: 1.7872 L22: 8.1982 REMARK 3 L33: 4.0123 L12: -1.5197 REMARK 3 L13: -2.2882 L23: -0.7870 REMARK 3 S TENSOR REMARK 3 S11: 0.3981 S12: 0.4327 S13: -1.2786 REMARK 3 S21: -0.5126 S22: 0.1273 S23: 0.9902 REMARK 3 S31: 1.2009 S32: -0.2090 S33: -0.2569 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 51:121) REMARK 3 ORIGIN FOR THE GROUP (A): -20.3692 -23.2206 -2.5531 REMARK 3 T TENSOR REMARK 3 T11: 0.1199 T22: 0.1954 REMARK 3 T33: 0.2055 T12: -0.1285 REMARK 3 T13: 0.0131 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 1.7244 L22: 1.6451 REMARK 3 L33: 0.8558 L12: -0.1690 REMARK 3 L13: 0.0763 L23: -0.4440 REMARK 3 S TENSOR REMARK 3 S11: 0.1272 S12: 0.0321 S13: -0.2593 REMARK 3 S21: -0.0596 S22: -0.2234 S23: 0.4169 REMARK 3 S31: 0.3246 S32: -0.5075 S33: -0.0666 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 122:150) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4420 -20.1352 -0.4898 REMARK 3 T TENSOR REMARK 3 T11: 0.0741 T22: 0.0493 REMARK 3 T33: 0.1052 T12: -0.0370 REMARK 3 T13: -0.0165 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 2.3466 L22: 0.1377 REMARK 3 L33: 2.0142 L12: 0.3630 REMARK 3 L13: -0.5367 L23: 0.2524 REMARK 3 S TENSOR REMARK 3 S11: 0.2224 S12: -0.0533 S13: -0.0248 REMARK 3 S21: 0.0007 S22: -0.1067 S23: 0.0160 REMARK 3 S31: -0.0204 S32: -0.0195 S33: -0.1177 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 151:182) REMARK 3 ORIGIN FOR THE GROUP (A): -6.0829 -36.6727 10.3019 REMARK 3 T TENSOR REMARK 3 T11: 0.4772 T22: 0.2438 REMARK 3 T33: 0.5831 T12: -0.1883 REMARK 3 T13: -0.1267 T23: 0.2298 REMARK 3 L TENSOR REMARK 3 L11: 4.1756 L22: 8.3601 REMARK 3 L33: 1.6374 L12: -3.6527 REMARK 3 L13: 2.2385 L23: -0.4633 REMARK 3 S TENSOR REMARK 3 S11: 0.1018 S12: -0.9234 S13: -0.8987 REMARK 3 S21: 0.9342 S22: 0.1049 S23: -0.2069 REMARK 3 S31: 0.6855 S32: -0.2443 S33: 0.2091 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M8U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15752 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.770 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.77 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.320 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2EJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M CALCIUM REMARK 280 CHLORIDE, 28% (W/V) PEG400 CRYOPROTECTANT PARATONE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 49.36000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 49.36000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 49.36000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 49.36000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 49.36000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 49.36000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 52540 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -350.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 408 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 416 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 418 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 4LU A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6M8T RELATED DB: PDB REMARK 900 RELATED ID: 6M8V RELATED DB: PDB DBREF 6M8U A 1 182 UNP O29054 UBIX_ARCFU 1 182 SEQADV 6M8U GLU A -6 UNP O29054 EXPRESSION TAG SEQADV 6M8U ASN A -5 UNP O29054 EXPRESSION TAG SEQADV 6M8U LEU A -4 UNP O29054 EXPRESSION TAG SEQADV 6M8U TYR A -3 UNP O29054 EXPRESSION TAG SEQADV 6M8U PHE A -2 UNP O29054 EXPRESSION TAG SEQADV 6M8U GLN A -1 UNP O29054 EXPRESSION TAG SEQADV 6M8U GLY A 0 UNP O29054 EXPRESSION TAG SEQRES 1 A 189 GLU ASN LEU TYR PHE GLN GLY MET ARG PHE VAL VAL ALA SEQRES 2 A 189 LEU THR GLY ALA SER GLY GLN ILE LEU GLY ILE ARG LEU SEQRES 3 A 189 ILE GLU LYS LEU THR GLU LEU GLY ALA GLU VAL TYR ALA SEQRES 4 A 189 VAL ALA SER ARG ALA ALA LYS ILE THR LEU LYS ALA GLU SEQRES 5 A 189 THR ASP TYR ASP GLU GLY TYR VAL ARG GLU ILE ALA THR SEQRES 6 A 189 LYS TYR TYR ASP GLU ASP GLU ILE ALA ALA PRO PHE ALA SEQRES 7 A 189 SER GLY SER PHE ARG HIS ASP GLY MET ALA VAL VAL PRO SEQRES 8 A 189 CYS SER ILE LYS THR ALA SER SER ILE ALA TYR GLY ILE SEQRES 9 A 189 ALA ASP ASN LEU ILE ALA ARG ALA ALA ASP VAL THR LEU SEQRES 10 A 189 LYS GLU LYS ARG ARG LEU VAL LEU ALA ILE ARG GLU ALA SEQRES 11 A 189 PRO LEU HIS SER GLY HIS LEU LYS THR LEU ALA ARG LEU SEQRES 12 A 189 ALA GLU MET GLY ALA VAL ILE PHE PRO PRO VAL LEU SER SEQRES 13 A 189 PHE TYR THR ARG PRO LYS SER VAL ASP ASP LEU ILE GLU SEQRES 14 A 189 HIS THR VAL SER ARG ILE ALA GLU GLN LEU GLY VAL GLU SEQRES 15 A 189 VAL ASP TYR ARG ARG TRP GLY HET 4LU A 201 36 HET PO4 A 202 5 HETNAM 4LU 1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11- HETNAM 2 4LU DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8- HETNAM 3 4LU FG]PTERIDIN-12-IUM-7-Y L)-D-RIBITOL HETNAM PO4 PHOSPHATE ION HETSYN 4LU PRENYLATED-FMN IMINIUM FORM FORMUL 2 4LU C22 H30 N4 O9 P 1+ FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *120(H2 O) HELIX 1 AA1 GLY A 12 LEU A 26 1 15 HELIX 2 AA2 SER A 35 THR A 46 1 12 HELIX 3 AA3 GLY A 51 ALA A 57 1 7 HELIX 4 AA4 ALA A 68 SER A 72 5 5 HELIX 5 AA5 SER A 86 GLY A 96 1 11 HELIX 6 AA6 ASN A 100 GLU A 112 1 13 HELIX 7 AA7 HIS A 126 GLY A 140 1 15 HELIX 8 AA8 SER A 156 LEU A 172 1 17 SHEET 1 AA1 6 LYS A 59 ASP A 62 0 SHEET 2 AA1 6 GLU A 29 ALA A 34 1 N ALA A 32 O LYS A 59 SHEET 3 AA1 6 ARG A 2 LEU A 7 1 N LEU A 7 O VAL A 33 SHEET 4 AA1 6 MET A 80 CYS A 85 1 O ALA A 81 N ALA A 6 SHEET 5 AA1 6 LEU A 116 ILE A 120 1 O ALA A 119 N CYS A 85 SHEET 6 AA1 6 VAL A 142 ILE A 143 1 O VAL A 142 N LEU A 116 CISPEP 1 VAL A 83 PRO A 84 0 -3.88 CISPEP 2 ALA A 123 PRO A 124 0 -9.10 SITE 1 AC1 24 THR A 8 GLY A 9 ALA A 10 SER A 11 SITE 2 AC1 24 SER A 35 ALA A 37 ILE A 66 SER A 86 SITE 3 AC1 24 ILE A 87 LYS A 88 THR A 89 ALA A 98 SITE 4 AC1 24 ASP A 99 ARG A 104 ARG A 121 GLU A 122 SITE 5 AC1 24 TYR A 151 TRP A 181 PO4 A 202 HOH A 320 SITE 6 AC1 24 HOH A 331 HOH A 363 HOH A 371 HOH A 382 SITE 1 AC2 9 SER A 72 GLY A 73 ARG A 104 LYS A 111 SITE 2 AC2 9 ARG A 121 GLU A 122 TYR A 151 4LU A 201 SITE 3 AC2 9 HOH A 327 CRYST1 98.720 98.720 98.720 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010130 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010130 0.00000