HEADER LYASE 22-AUG-18 6M8V TITLE CRYSTAL STRUCTURE OF UBIX-LIKE FMN PRENYLTRANSFERASE MJ0101 FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII, FMN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIN PRENYLTRANSFERASE UBIX; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.129; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 6 GENE: UBIX, MJ0102; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) GOLD; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS FMN BINDING, UBIX, PRENYL TRANSFERASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,A.KHUSNUTDINOVA,Z.WAWRZAK,A.F.YAKUNIN, AUTHOR 2 A.SAVCHENKO REVDAT 2 11-OCT-23 6M8V 1 REMARK REVDAT 1 26-FEB-20 6M8V 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF UBIX-LIKE FMN PRENYLTRANSFERASE MJ0101 JRNL TITL 2 FROM METHANOCALDOCOCCUS JANNASCHII, FMN COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 18570 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 909 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.2404 - 4.0315 1.00 3029 147 0.1453 0.1914 REMARK 3 2 4.0315 - 3.2015 1.00 2997 153 0.1450 0.2026 REMARK 3 3 3.2015 - 2.7973 1.00 3010 157 0.1446 0.2098 REMARK 3 4 2.7973 - 2.5417 1.00 3015 156 0.1634 0.2456 REMARK 3 5 2.5417 - 2.3597 1.00 2988 151 0.1791 0.1960 REMARK 3 6 2.3597 - 2.2206 0.86 2622 145 0.1970 0.2243 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1523 REMARK 3 ANGLE : 0.648 2061 REMARK 3 CHIRALITY : 0.047 238 REMARK 3 PLANARITY : 0.003 250 REMARK 3 DIHEDRAL : 19.568 576 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3137 33.7276 134.3595 REMARK 3 T TENSOR REMARK 3 T11: 0.4135 T22: 0.1935 REMARK 3 T33: 0.5348 T12: -0.2409 REMARK 3 T13: -0.0103 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.1793 L22: 1.2684 REMARK 3 L33: 0.9027 L12: -0.0846 REMARK 3 L13: 0.1735 L23: 0.1485 REMARK 3 S TENSOR REMARK 3 S11: 0.0185 S12: -0.1418 S13: 0.3909 REMARK 3 S21: 0.1688 S22: -0.0232 S23: -0.2756 REMARK 3 S31: -0.2952 S32: 0.1748 S33: 0.0146 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.2234 35.5464 119.8968 REMARK 3 T TENSOR REMARK 3 T11: 0.5565 T22: 0.3068 REMARK 3 T33: 0.4953 T12: -0.1634 REMARK 3 T13: 0.0388 T23: 0.1724 REMARK 3 L TENSOR REMARK 3 L11: 7.7031 L22: 8.8749 REMARK 3 L33: 4.1642 L12: 1.4784 REMARK 3 L13: -3.4452 L23: 0.4293 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: 0.4748 S13: 0.3117 REMARK 3 S21: -0.8219 S22: 0.0441 S23: -0.0874 REMARK 3 S31: -0.2902 S32: 0.0010 S33: -0.0190 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5507 40.6484 124.9701 REMARK 3 T TENSOR REMARK 3 T11: 0.7591 T22: 0.4339 REMARK 3 T33: 0.9076 T12: -0.3087 REMARK 3 T13: 0.0856 T23: 0.1431 REMARK 3 L TENSOR REMARK 3 L11: 0.9840 L22: 3.4426 REMARK 3 L33: 1.3266 L12: 0.6070 REMARK 3 L13: -0.6909 L23: -0.2788 REMARK 3 S TENSOR REMARK 3 S11: 0.0182 S12: 0.1536 S13: 0.4165 REMARK 3 S21: -0.0723 S22: 0.0056 S23: -0.2116 REMARK 3 S31: -0.4038 S32: 0.2435 S33: -0.0253 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3603 26.1790 127.3907 REMARK 3 T TENSOR REMARK 3 T11: 0.3634 T22: 0.4822 REMARK 3 T33: 0.6847 T12: -0.2702 REMARK 3 T13: 0.0633 T23: 0.0527 REMARK 3 L TENSOR REMARK 3 L11: 2.5201 L22: 2.3003 REMARK 3 L33: 1.7413 L12: 0.6954 REMARK 3 L13: 0.5857 L23: 0.3753 REMARK 3 S TENSOR REMARK 3 S11: 0.0006 S12: 0.0742 S13: 0.0470 REMARK 3 S21: -0.0409 S22: 0.0215 S23: -0.2492 REMARK 3 S31: -0.1043 S32: 0.1980 S33: -0.0163 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 125 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.4954 20.3843 131.5648 REMARK 3 T TENSOR REMARK 3 T11: 0.1534 T22: 0.0963 REMARK 3 T33: 0.2687 T12: -0.1663 REMARK 3 T13: 0.0312 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 0.2270 L22: 0.3394 REMARK 3 L33: 0.4527 L12: -0.1713 REMARK 3 L13: 0.0412 L23: -0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: 0.0016 S13: 0.1866 REMARK 3 S21: 0.0244 S22: -0.0012 S23: -0.1841 REMARK 3 S31: -0.1451 S32: 0.1783 S33: 0.0246 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 126 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3129 14.9077 131.5649 REMARK 3 T TENSOR REMARK 3 T11: 0.0281 T22: -0.0044 REMARK 3 T33: 0.0916 T12: -0.0440 REMARK 3 T13: 0.0257 T23: 0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.8548 L22: 0.3789 REMARK 3 L33: 1.4482 L12: 0.0023 REMARK 3 L13: 0.7842 L23: -0.3015 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0080 S13: -0.1183 REMARK 3 S21: -0.0626 S22: 0.0288 S23: -0.0063 REMARK 3 S31: 0.1384 S32: -0.0492 S33: -0.0426 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5610 34.3795 139.9773 REMARK 3 T TENSOR REMARK 3 T11: 0.4384 T22: 0.1264 REMARK 3 T33: 0.4531 T12: -0.0613 REMARK 3 T13: 0.0028 T23: -0.1243 REMARK 3 L TENSOR REMARK 3 L11: 0.4307 L22: 2.1467 REMARK 3 L33: 0.8019 L12: -0.3952 REMARK 3 L13: 0.0762 L23: -0.0322 REMARK 3 S TENSOR REMARK 3 S11: -0.0142 S12: -0.1393 S13: 0.3967 REMARK 3 S21: 0.2339 S22: -0.0403 S23: 0.1125 REMARK 3 S31: -0.5369 S32: -0.0556 S33: 0.0826 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 183 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2833 36.6528 148.7192 REMARK 3 T TENSOR REMARK 3 T11: 0.7865 T22: 0.4794 REMARK 3 T33: 0.7065 T12: -0.2441 REMARK 3 T13: -0.0558 T23: -0.2409 REMARK 3 L TENSOR REMARK 3 L11: 4.6493 L22: 6.7173 REMARK 3 L33: 2.7396 L12: -1.9810 REMARK 3 L13: -0.8668 L23: 1.5298 REMARK 3 S TENSOR REMARK 3 S11: 0.0163 S12: -0.3470 S13: 0.1693 REMARK 3 S21: 0.3287 S22: 0.0173 S23: 0.1551 REMARK 3 S31: -0.0400 S32: -0.1550 S33: -0.0160 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M8V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236371. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11575 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.08700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 41.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.70 REMARK 200 R MERGE FOR SHELL (I) : 1.38200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2EJB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 0.2 M CALCIUM REMARK 280 CHLORIDE, 28% (W/V) PEG400 CRYOPROTECTANT 5% GLYCEROL, PARATONE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: F 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z+1/2 REMARK 290 15555 -X,Y+1/2,-Z+1/2 REMARK 290 16555 X,-Y+1/2,-Z+1/2 REMARK 290 17555 Z,X+1/2,Y+1/2 REMARK 290 18555 Z,-X+1/2,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y+1/2 REMARK 290 20555 -Z,X+1/2,-Y+1/2 REMARK 290 21555 Y,Z+1/2,X+1/2 REMARK 290 22555 -Y,Z+1/2,-X+1/2 REMARK 290 23555 Y,-Z+1/2,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X+1/2 REMARK 290 25555 X+1/2,Y,Z+1/2 REMARK 290 26555 -X+1/2,-Y,Z+1/2 REMARK 290 27555 -X+1/2,Y,-Z+1/2 REMARK 290 28555 X+1/2,-Y,-Z+1/2 REMARK 290 29555 Z+1/2,X,Y+1/2 REMARK 290 30555 Z+1/2,-X,-Y+1/2 REMARK 290 31555 -Z+1/2,-X,Y+1/2 REMARK 290 32555 -Z+1/2,X,-Y+1/2 REMARK 290 33555 Y+1/2,Z,X+1/2 REMARK 290 34555 -Y+1/2,Z,-X+1/2 REMARK 290 35555 Y+1/2,-Z,-X+1/2 REMARK 290 36555 -Y+1/2,-Z,X+1/2 REMARK 290 37555 X+1/2,Y+1/2,Z REMARK 290 38555 -X+1/2,-Y+1/2,Z REMARK 290 39555 -X+1/2,Y+1/2,-Z REMARK 290 40555 X+1/2,-Y+1/2,-Z REMARK 290 41555 Z+1/2,X+1/2,Y REMARK 290 42555 Z+1/2,-X+1/2,-Y REMARK 290 43555 -Z+1/2,-X+1/2,Y REMARK 290 44555 -Z+1/2,X+1/2,-Y REMARK 290 45555 Y+1/2,Z+1/2,X REMARK 290 46555 -Y+1/2,Z+1/2,-X REMARK 290 47555 Y+1/2,-Z+1/2,-X REMARK 290 48555 -Y+1/2,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 25 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 25 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 25 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 26 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 26 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 26 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY1 27 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 27 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 27 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 28 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 28 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY1 29 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY2 29 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 29 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY1 30 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY2 30 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 30 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY1 31 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY2 31 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 31 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY1 32 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY2 32 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 32 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY1 33 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY2 33 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 33 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 34 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY2 34 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 34 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 35 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY2 35 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 35 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 36 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY2 36 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 36 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY1 37 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 37 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY3 37 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 38 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 38 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY3 38 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 39 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 39 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY3 39 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 40 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY2 40 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY3 40 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 41 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY2 41 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 41 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 42 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY2 42 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 42 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 43 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY2 43 -1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 43 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 44 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY2 44 1.000000 0.000000 0.000000 66.72000 REMARK 290 SMTRY3 44 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 45 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY2 45 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY3 45 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 46 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY2 46 0.000000 0.000000 1.000000 66.72000 REMARK 290 SMTRY3 46 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 47 0.000000 1.000000 0.000000 66.72000 REMARK 290 SMTRY2 47 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY3 47 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 48 0.000000 -1.000000 0.000000 66.72000 REMARK 290 SMTRY2 48 0.000000 0.000000 -1.000000 66.72000 REMARK 290 SMTRY3 48 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 71700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 55870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -486.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 266.88000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 266.88000 REMARK 350 BIOMT1 5 0.000000 0.000000 1.000000 -133.44000 REMARK 350 BIOMT2 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 1.000000 0.000000 133.44000 REMARK 350 BIOMT1 6 0.000000 0.000000 1.000000 -133.44000 REMARK 350 BIOMT2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 -1.000000 0.000000 133.44000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 133.44000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 133.44000 REMARK 350 BIOMT1 8 0.000000 0.000000 -1.000000 133.44000 REMARK 350 BIOMT2 8 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 -1.000000 0.000000 133.44000 REMARK 350 BIOMT1 9 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 9 0.000000 0.000000 1.000000 -133.44000 REMARK 350 BIOMT3 9 1.000000 0.000000 0.000000 133.44000 REMARK 350 BIOMT1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 10 0.000000 0.000000 1.000000 -133.44000 REMARK 350 BIOMT3 10 -1.000000 0.000000 0.000000 133.44000 REMARK 350 BIOMT1 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 0.000000 -1.000000 133.44000 REMARK 350 BIOMT3 11 -1.000000 0.000000 0.000000 133.44000 REMARK 350 BIOMT1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 12 0.000000 0.000000 -1.000000 133.44000 REMARK 350 BIOMT3 12 1.000000 0.000000 0.000000 133.44000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 306 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 385 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 395 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 397 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 73.63 50.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6M8T RELATED DB: PDB REMARK 900 RELATED ID: 6M8U RELATED DB: PDB DBREF 6M8V A 1 184 UNP Q57566 UBIX_METJA 1 184 SEQRES 1 A 184 MET LYS ILE ILE VAL CYS ILE THR GLY ALA SER GLY VAL SEQRES 2 A 184 ILE TYR ALA LYS ARG LEU LEU GLU VAL LEU LYS ASP ARG SEQRES 3 A 184 ALA GLU VAL ASN LEU ILE ILE SER ASN SER ALA LYS LYS SEQRES 4 A 184 ILE ILE LYS GLU GLU LEU ASP ILE ASP TRP LYS GLU ILE SEQRES 5 A 184 LYS LYS LEU ALA THR ASP TYR TYR GLU ASN ASP ASP PHE SEQRES 6 A 184 PHE SER PRO LEU ALA SER GLY SER ASN LYS PHE ASP ALA SEQRES 7 A 184 VAL VAL VAL VAL PRO CYS SER MET LYS THR LEU SER ALA SEQRES 8 A 184 ILE ALA ASN GLY TYR SER ALA ASN LEU ILE VAL ARG VAL SEQRES 9 A 184 CYS ASP ILE ALA LEU LYS GLU ARG ARG LYS LEU ILE ILE SEQRES 10 A 184 MET PRO ARG GLU MET PRO PHE ASN SER ILE HIS LEU GLU SEQRES 11 A 184 ASN MET LEU LYS LEU SER ASN LEU GLY ALA ILE VAL MET SEQRES 12 A 184 PRO PRO ILE PRO ALA PHE TYR ASN LYS PRO LYS ASN VAL SEQRES 13 A 184 ASN ASP ILE ILE ASN PHE VAL VAL GLY ARG VAL LEU ASP SEQRES 14 A 184 ILE LEU GLY ILE ASP ASN SER LEU PHE LYS ARG TRP GLY SEQRES 15 A 184 THR VAL HET FMN A 201 31 HET PO4 A 202 5 HET GOL A 203 6 HET GOL A 204 6 HET GOL A 205 6 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 PO4 O4 P 3- FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 HOH *97(H2 O) HELIX 1 AA1 GLY A 12 LEU A 23 1 12 HELIX 2 AA2 SER A 34 ASP A 46 1 13 HELIX 3 AA3 TRP A 49 LYS A 54 1 6 HELIX 4 AA4 SER A 67 SER A 71 5 5 HELIX 5 AA5 SER A 85 GLY A 95 1 11 HELIX 6 AA6 ASN A 99 GLU A 111 1 13 HELIX 7 AA7 ASN A 125 LEU A 138 1 14 HELIX 8 AA8 ASN A 155 GLY A 172 1 18 SHEET 1 AA1 6 ASP A 58 GLU A 61 0 SHEET 2 AA1 6 GLU A 28 ILE A 33 1 N LEU A 31 O ASP A 58 SHEET 3 AA1 6 LYS A 2 ILE A 7 1 N VAL A 5 O ASN A 30 SHEET 4 AA1 6 ALA A 78 CYS A 84 1 O VAL A 80 N ILE A 4 SHEET 5 AA1 6 LYS A 114 PRO A 119 1 O ILE A 116 N VAL A 79 SHEET 6 AA1 6 ILE A 141 VAL A 142 1 O ILE A 141 N LEU A 115 CISPEP 1 VAL A 82 PRO A 83 0 -13.94 CISPEP 2 MET A 122 PRO A 123 0 -7.97 SITE 1 AC1 20 THR A 8 GLY A 9 ALA A 10 SER A 11 SITE 2 AC1 20 SER A 34 SER A 36 ILE A 40 PHE A 65 SITE 3 AC1 20 SER A 85 MET A 86 LYS A 87 THR A 88 SITE 4 AC1 20 SER A 97 ARG A 103 ARG A 120 GLU A 121 SITE 5 AC1 20 TRP A 181 HOH A 301 HOH A 313 HOH A 333 SITE 1 AC2 8 SER A 71 GLY A 72 ARG A 103 LYS A 110 SITE 2 AC2 8 ARG A 120 GLU A 121 TYR A 150 HOH A 305 SITE 1 AC3 5 LEU A 133 ASN A 137 GOL A 205 HOH A 302 SITE 2 AC3 5 HOH A 345 SITE 1 AC4 2 THR A 57 ASP A 58 SITE 1 AC5 5 LYS A 134 ASN A 137 LEU A 138 GOL A 203 SITE 2 AC5 5 HOH A 309 CRYST1 133.440 133.440 133.440 90.00 90.00 90.00 F 2 3 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007494 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007494 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007494 0.00000