HEADER HYDROLASE/HYDROLASE INHIBITOR 22-AUG-18 6M8W TITLE PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE TITLE 2 INHIBITOR AIAF COMPND MOL_ID: 1; COMPND 2 MOLECULE: SEDOLISIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PEPSTATIN-INSENSITIVE CARBOXYL PROTEINASE,PSEUDOMONAPEPSIN, COMPND 5 PSEUDOMONALISIN; COMPND 6 EC: 3.4.21.100; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: AIAF PEPTIDE INHIBITOR; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP. (STRAIN 101); SOURCE 3 ORGANISM_TAXID: 33067; SOURCE 4 STRAIN: 101; SOURCE 5 GENE: PCP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS SERINE-CARBOXYL PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.WLODAWER,M.LI,A.GUSTCHINA,Z.DAUTER,K.UCHIDA,H.OYAMA,N.E.GOLDFARB, AUTHOR 2 B.M.DUNN,K.ODA REVDAT 2 04-DEC-19 6M8W 1 REMARK REVDAT 1 24-OCT-18 6M8W 0 SPRSDE 24-OCT-18 6M8W 1KDV JRNL AUTH A.WLODAWER,M.LI,A.GUSTCHINA,Z.DAUTER,K.UCHIDA,H.OYAMA, JRNL AUTH 2 N.E.GOLDFARB,B.M.DUNN,K.ODA JRNL TITL INHIBITOR COMPLEXES OF THE PSEUDOMONAS SERINE-CARBOXYL JRNL TITL 2 PROTEINASE JRNL REF BIOCHEMISTRY V. 40 15602 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11747435 JRNL DOI 10.1021/BI011817N REMARK 2 REMARK 2 RESOLUTION. 1.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL 2018/3 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.132 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.131 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.150 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9065 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 181193 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.102 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : 0.102 REMARK 3 FREE R VALUE (F>4SIG(F)) : 0.121 REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : 6862 REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 129333 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2724 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 2708.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2418.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 16 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 29315 REMARK 3 NUMBER OF RESTRAINTS : 36015 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 ANGLE DISTANCES (A) : 0.028 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.380 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.100 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.111 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.041 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.130 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6M8W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181240 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.100 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.51900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CACL2, GLYCEROL, REMARK 280 GUANIDINE HYDROCHLORIDE, PH 4.3, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.64000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.82000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 55.64000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.82000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 764 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 868 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 873 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 THE UNBOUND INHIBITOR (CHAIN B) IS ACE-ILE-ALA-PHA, N-ACETYL-L- REMARK 400 ISOLEUCYL-N-[(2S)-1-OXO-3-PHENYLPROPAN-2-YL]-L-ALANINAMIDE WITH C- REMARK 400 TERMINAL PHENYLALANINAL. UPON REACTION THE INHIBITOR COVALENTLY REMARK 400 BINDS TO THE OG ATOM OF SER A287 OF THE ENZYME (CHAIN A) FORMING A REMARK 400 TETRAHEDRAL HEMIACETAL. DUE TO THE CHEMICAL CHANGE, THE C-TERMINAL REMARK 400 RESIDUE IS REPRESENTED IN SEQUENCE AS PHL, PHENYLALANINOL (BOUND REMARK 400 FORM OF PHENYLALANINAL) REMARK 400 REMARK 400 THE AIAF, ACE ILE ALA PHL IS PEPTIDE-LIKE, A MEMBER OF INHIBITOR REMARK 400 CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: AIAF, ACE ILE ALA PHL REMARK 400 CHAIN: B REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 3 C - N - CA ANGL. DEV. = -15.5 DEGREES REMARK 500 GLU A 80 OE1 - CD - OE2 ANGL. DEV. = 13.1 DEGREES REMARK 500 GLU A 80 CG - CD - OE2 ANGL. DEV. = -14.9 DEGREES REMARK 500 GLN A 148 CB - CG - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 179 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 256 CD - NE - CZ ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG A 256 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 336 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 366 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG A 366 NE - CZ - NH1 ANGL. DEV. = -8.5 DEGREES REMARK 500 ARG A 366 NE - CZ - NH1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 366 NE - CZ - NH2 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 133 59.93 -91.91 REMARK 500 ALA A 266 -21.07 -142.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 152 0.19 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 938 DISTANCE = 6.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 328 OD1 REMARK 620 2 VAL A 329 O 90.2 REMARK 620 3 GLY A 344 O 100.1 84.6 REMARK 620 4 GLY A 346 O 85.5 173.8 91.7 REMARK 620 5 ASP A 348 OD2 171.5 85.0 86.5 99.8 REMARK 620 6 HOH A 637 O 87.2 91.2 171.6 93.0 85.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 401 DBREF 6M8W A 2 370 UNP P42790 PICP_PSESR 217 585 DBREF 6M8W B 381 384 PDB 6M8W 6M8W 381 384 SEQRES 1 A 369 ALA GLY THR ALA LYS GLY HIS ASN PRO THR GLU PHE PRO SEQRES 2 A 369 THR ILE TYR ASP ALA SER SER ALA PRO THR ALA ALA ASN SEQRES 3 A 369 THR THR VAL GLY ILE ILE THR ILE GLY GLY VAL SER GLN SEQRES 4 A 369 THR LEU GLN ASP LEU GLN GLN PHE THR SER ALA ASN GLY SEQRES 5 A 369 LEU ALA SER VAL ASN THR GLN THR ILE GLN THR GLY SER SEQRES 6 A 369 SER ASN GLY ASP TYR SER ASP ASP GLN GLN GLY GLN GLY SEQRES 7 A 369 GLU TRP ASP LEU ASP SER GLN SER ILE VAL GLY SER ALA SEQRES 8 A 369 GLY GLY ALA VAL GLN GLN LEU LEU PHE TYR MET ALA ASP SEQRES 9 A 369 GLN SER ALA SER GLY ASN THR GLY LEU THR GLN ALA PHE SEQRES 10 A 369 ASN GLN ALA VAL SER ASP ASN VAL ALA LYS VAL ILE ASN SEQRES 11 A 369 VAL SER LEU GLY TRP CYS GLU ALA ASP ALA ASN ALA ASP SEQRES 12 A 369 GLY THR LEU GLN ALA GLU ASP ARG ILE PHE ALA THR ALA SEQRES 13 A 369 ALA ALA GLN GLY GLN THR PHE SER VAL SER SER GLY ASP SEQRES 14 A 369 GLU GLY VAL TYR GLU CYS ASN ASN ARG GLY TYR PRO ASP SEQRES 15 A 369 GLY SER THR TYR SER VAL SER TRP PRO ALA SER SER PRO SEQRES 16 A 369 ASN VAL ILE ALA VAL GLY GLY THR THR LEU TYR THR THR SEQRES 17 A 369 SER ALA GLY ALA TYR SER ASN GLU THR VAL TRP ASN GLU SEQRES 18 A 369 GLY LEU ASP SER ASN GLY LYS LEU TRP ALA THR GLY GLY SEQRES 19 A 369 GLY TYR SER VAL TYR GLU SER LYS PRO SER TRP GLN SER SEQRES 20 A 369 VAL VAL SER GLY THR PRO GLY ARG ARG LEU LEU PRO ASP SEQRES 21 A 369 ILE SER PHE ASP ALA ALA GLN GLY THR GLY ALA LEU ILE SEQRES 22 A 369 TYR ASN TYR GLY GLN LEU GLN GLN ILE GLY GLY THR SER SEQRES 23 A 369 LEU ALA SER PRO ILE PHE VAL GLY LEU TRP ALA ARG LEU SEQRES 24 A 369 GLN SER ALA ASN SER ASN SER LEU GLY PHE PRO ALA ALA SEQRES 25 A 369 SER PHE TYR SER ALA ILE SER SER THR PRO SER LEU VAL SEQRES 26 A 369 HIS ASP VAL LYS SER GLY ASN ASN GLY TYR GLY GLY TYR SEQRES 27 A 369 GLY TYR ASN ALA GLY THR GLY TRP ASP TYR PRO THR GLY SEQRES 28 A 369 TRP GLY SER LEU ASP ILE ALA LYS LEU SER ALA TYR ILE SEQRES 29 A 369 ARG SER ASN GLY PHE SEQRES 1 B 4 ACE ILE ALA PHL HET ACE B 381 3 HET PHL B 384 11 HET CA A 401 1 HET GOL A 402 6 HET GOL A 403 6 HET CL A 404 1 HET GOL B 401 6 HETNAM ACE ACETYL GROUP HETNAM PHL L-PHENYLALANINOL HETNAM CA CALCIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN PHL BOUND FORM OF PHENYLALANINAL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ACE C2 H4 O FORMUL 2 PHL C9 H13 N O FORMUL 3 CA CA 2+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 6 CL CL 1- FORMUL 8 HOH *445(H2 O) HELIX 1 AA1 ASN A 9 THR A 11 5 3 HELIX 2 AA2 GLU A 12 TYR A 17 1 6 HELIX 3 AA3 VAL A 38 ASN A 52 1 15 HELIX 4 AA4 ASP A 74 ALA A 92 1 19 HELIX 5 AA5 ASN A 111 ASN A 125 1 15 HELIX 6 AA6 GLU A 138 ASP A 144 1 7 HELIX 7 AA7 GLY A 145 GLN A 160 1 16 HELIX 8 AA8 PRO A 244 VAL A 250 5 7 HELIX 9 AA9 ALA A 267 GLY A 271 5 5 HELIX 10 AB1 GLY A 285 ASN A 304 1 20 HELIX 11 AB2 PRO A 311 THR A 322 1 12 HELIX 12 AB3 ASP A 357 GLY A 369 1 13 SHEET 1 AA1 7 THR A 59 GLN A 63 0 SHEET 2 AA1 7 VAL A 96 ALA A 104 1 O PHE A 101 N ILE A 62 SHEET 3 AA1 7 ALA A 25 ILE A 35 1 N THR A 34 O ALA A 104 SHEET 4 AA1 7 VAL A 129 VAL A 132 1 O ASN A 131 N GLY A 31 SHEET 5 AA1 7 THR A 163 SER A 167 1 O SER A 165 N ILE A 130 SHEET 6 AA1 7 ILE A 199 THR A 208 1 O ILE A 199 N PHE A 164 SHEET 7 AA1 7 TYR A 214 VAL A 219 -1 O ASN A 216 N TYR A 207 SHEET 1 AA2 7 THR A 59 GLN A 63 0 SHEET 2 AA2 7 VAL A 96 ALA A 104 1 O PHE A 101 N ILE A 62 SHEET 3 AA2 7 ALA A 25 ILE A 35 1 N THR A 34 O ALA A 104 SHEET 4 AA2 7 VAL A 129 VAL A 132 1 O ASN A 131 N GLY A 31 SHEET 5 AA2 7 THR A 163 SER A 167 1 O SER A 165 N ILE A 130 SHEET 6 AA2 7 ILE A 199 THR A 208 1 O ILE A 199 N PHE A 164 SHEET 7 AA2 7 ILE A 262 ASP A 265 1 O ILE A 262 N GLY A 202 SHEET 1 AA3 2 TRP A 136 CYS A 137 0 SHEET 2 AA3 2 SER A 190 TRP A 191 -1 O TRP A 191 N TRP A 136 SHEET 1 AA4 2 ASN A 221 LEU A 224 0 SHEET 2 AA4 2 LEU A 230 ALA A 232 -1 O TRP A 231 N GLU A 222 SHEET 1 AA5 2 GLY A 236 SER A 242 0 SHEET 2 AA5 2 ARG A 256 LEU A 259 -1 O LEU A 259 N GLY A 236 SHEET 1 AA6 2 ALA A 272 ASN A 276 0 SHEET 2 AA6 2 GLN A 279 ILE A 283 -1 O GLN A 281 N ILE A 274 SHEET 1 AA7 2 VAL A 326 HIS A 327 0 SHEET 2 AA7 2 SER A 355 LEU A 356 -1 O SER A 355 N HIS A 327 SSBOND 1 CYS A 137 CYS A 176 1555 1555 2.08 LINK OG SER A 287 C PHL B 384 1555 1555 1.54 LINK OD1 ASP A 328 CA CA A 401 1555 1555 2.31 LINK O VAL A 329 CA CA A 401 1555 1555 2.30 LINK O GLY A 344 CA CA A 401 1555 1555 2.31 LINK O GLY A 346 CA CA A 401 1555 1555 2.34 LINK OD2 ASP A 348 CA CA A 401 1555 1555 2.29 LINK C ACE B 381 N ILE B 382 1555 1555 1.34 LINK C ALA B 383 N PHL B 384 1555 1555 1.33 LINK CA CA A 401 O HOH A 637 1555 1555 2.42 CISPEP 1 TRP A 191 PRO A 192 0 7.22 CISPEP 2 LEU A 259 PRO A 260 0 -0.63 SITE 1 AC1 6 ASP A 328 VAL A 329 GLY A 344 GLY A 346 SITE 2 AC1 6 ASP A 348 HOH A 637 SITE 1 AC2 11 ASN A 9 PHE A 48 ASN A 52 THR A 186 SITE 2 AC2 11 LEU A 273 TYR A 275 LEU A 280 HOH A 503 SITE 3 AC2 11 HOH A 536 HOH A 548 HOH A 714 SITE 1 AC3 5 ALA A 5 ASN A 221 GLU A 222 HOH A 561 SITE 2 AC3 5 HOH A 578 SITE 1 AC4 4 HOH A 710 HOH A 735 HOH A 923 HOH A 927 SITE 1 AC5 8 GLY A 77 ACE B 381 ILE B 382 ALA B 383 SITE 2 AC5 8 HOH B 502 HOH B 503 HOH B 504 HOH B 506 CRYST1 97.290 97.290 83.460 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010279 0.005934 0.000000 0.00000 SCALE2 0.000000 0.011869 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011982 0.00000