HEADER HYDROLASE 28-AUG-18 6MAO TITLE CRYSTAL STRUCTURE OF DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE TITLE 2 FROM LEGIONELLA PNEUMOPHILA PHILADELPHIA 1 IN COMPLEX WITH DUMP TITLE 3 (DEOXYURIDINE 5'-MONOPHOSPHATE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DUTPASE,DUTP PYROPHOSPHATASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA SOURCE 3 (STRAIN PHILADELPHIA 1 / ATCC 33152 / DSM 7513); SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1 / ATCC 33152 / DSM 7513; SOURCE 6 ATCC: 33152; SOURCE 7 GENE: DUT, LPG2487; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: LEPNA.01206.A.B1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 11-OCT-23 6MAO 1 REMARK REVDAT 1 12-SEP-18 6MAO 0 JRNL AUTH J.ABENDROTH,P.S.HORANYI,D.D.LORIMER,T.E.EDWARDS JRNL TITL CRYSTAL STRUCTURE OF DEOXYURIDINE 5'-TRIPHOSPHATE JRNL TITL 2 NUCLEOTIDOHYDROLASE FROM LEGIONELLA PNEUMOPHILA PHILADELPHIA JRNL TITL 3 1 IN COMPLEX WITH DUMP (DEOXYURIDINE 5'-MONOPHOSPHATE) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3211) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.181 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.420 REMARK 3 FREE R VALUE TEST SET COUNT : 1774 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.1029 - 4.5825 1.00 1210 151 0.1365 0.1555 REMARK 3 2 4.5825 - 3.6383 1.00 1175 150 0.1160 0.1438 REMARK 3 3 3.6383 - 3.1787 1.00 1180 126 0.1394 0.1871 REMARK 3 4 3.1787 - 2.8882 1.00 1201 123 0.1640 0.2062 REMARK 3 5 2.8882 - 2.6812 1.00 1171 119 0.1632 0.1870 REMARK 3 6 2.6812 - 2.5232 1.00 1177 133 0.1537 0.1961 REMARK 3 7 2.5232 - 2.3968 1.00 1151 159 0.1614 0.2252 REMARK 3 8 2.3968 - 2.2925 1.00 1180 128 0.1615 0.2036 REMARK 3 9 2.2925 - 2.2043 1.00 1171 120 0.1568 0.1879 REMARK 3 10 2.2043 - 2.1282 1.00 1148 154 0.1628 0.1852 REMARK 3 11 2.1282 - 2.0617 1.00 1158 146 0.1780 0.2021 REMARK 3 12 2.0617 - 2.0028 1.00 1156 129 0.1801 0.2277 REMARK 3 13 2.0028 - 1.9500 1.00 1179 136 0.2104 0.2521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.430 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1126 REMARK 3 ANGLE : 0.933 1547 REMARK 3 CHIRALITY : 0.074 184 REMARK 3 PLANARITY : 0.006 205 REMARK 3 DIHEDRAL : 13.830 689 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 9 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4272 28.7947 16.6315 REMARK 3 T TENSOR REMARK 3 T11: 0.2504 T22: 0.5094 REMARK 3 T33: 0.2722 T12: -0.0567 REMARK 3 T13: -0.0423 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 8.8412 L22: 2.0796 REMARK 3 L33: 4.2766 L12: 0.6294 REMARK 3 L13: -6.1484 L23: -0.4200 REMARK 3 S TENSOR REMARK 3 S11: -0.1591 S12: -0.9190 S13: 0.2457 REMARK 3 S21: 0.4248 S22: 0.0813 S23: -0.0502 REMARK 3 S31: 0.3009 S32: 0.4145 S33: 0.0420 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 10 THROUGH 29 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.3749 37.1846 8.0661 REMARK 3 T TENSOR REMARK 3 T11: 0.3040 T22: 0.3761 REMARK 3 T33: 0.2778 T12: -0.1385 REMARK 3 T13: -0.0314 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 8.7080 L22: 2.5066 REMARK 3 L33: 1.0526 L12: 1.6083 REMARK 3 L13: 0.3021 L23: -1.3352 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: 0.2590 S13: 0.6940 REMARK 3 S21: -0.0998 S22: 0.1469 S23: -0.0707 REMARK 3 S31: -0.2872 S32: 0.4859 S33: -0.1118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 30 THROUGH 40 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.4099 34.5831 -1.0255 REMARK 3 T TENSOR REMARK 3 T11: 0.1910 T22: 0.4485 REMARK 3 T33: 0.2529 T12: -0.0395 REMARK 3 T13: -0.0255 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 4.7905 L22: 5.8484 REMARK 3 L33: 9.7272 L12: 3.4479 REMARK 3 L13: -6.7436 L23: -4.4958 REMARK 3 S TENSOR REMARK 3 S11: -0.1233 S12: 0.1296 S13: 0.4030 REMARK 3 S21: -0.0603 S22: 0.1328 S23: -0.5156 REMARK 3 S31: 0.4578 S32: 0.6232 S33: -0.1341 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 41 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.2223 27.5370 -4.7203 REMARK 3 T TENSOR REMARK 3 T11: 0.2173 T22: 0.3414 REMARK 3 T33: 0.2388 T12: -0.0438 REMARK 3 T13: 0.0331 T23: -0.0334 REMARK 3 L TENSOR REMARK 3 L11: 4.1356 L22: 0.9344 REMARK 3 L33: 3.2823 L12: -0.4252 REMARK 3 L13: 3.6713 L23: -0.2734 REMARK 3 S TENSOR REMARK 3 S11: -0.1764 S12: 0.4948 S13: 0.0582 REMARK 3 S21: -0.1068 S22: 0.0992 S23: -0.1668 REMARK 3 S31: -0.1991 S32: 0.6904 S33: 0.0627 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 97 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1677 26.5683 4.1699 REMARK 3 T TENSOR REMARK 3 T11: 0.1472 T22: 0.1785 REMARK 3 T33: 0.1898 T12: -0.0252 REMARK 3 T13: -0.0032 T23: -0.0145 REMARK 3 L TENSOR REMARK 3 L11: 2.2404 L22: 1.2430 REMARK 3 L33: 3.7029 L12: -0.3798 REMARK 3 L13: 1.2673 L23: -0.5969 REMARK 3 S TENSOR REMARK 3 S11: 0.0294 S12: 0.0007 S13: 0.1040 REMARK 3 S21: 0.0677 S22: -0.0142 S23: -0.0958 REMARK 3 S31: -0.0011 S32: 0.1297 S33: 0.0130 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 98 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.0186 32.0771 -4.3328 REMARK 3 T TENSOR REMARK 3 T11: 0.1556 T22: 0.1996 REMARK 3 T33: 0.1832 T12: -0.0428 REMARK 3 T13: 0.0112 T23: -0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.2968 L22: 1.5122 REMARK 3 L33: 2.9120 L12: 0.3477 REMARK 3 L13: -0.5783 L23: 0.0362 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.1928 S13: 0.1430 REMARK 3 S21: -0.1266 S22: 0.0475 S23: -0.0951 REMARK 3 S31: -0.2954 S32: 0.4442 S33: -0.0491 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): -50.0048 6.4493 17.2032 REMARK 3 T TENSOR REMARK 3 T11: 0.3653 T22: 0.2715 REMARK 3 T33: 0.3767 T12: -0.0317 REMARK 3 T13: 0.0400 T23: 0.0928 REMARK 3 L TENSOR REMARK 3 L11: 7.9408 L22: 3.4815 REMARK 3 L33: 3.2931 L12: 5.1115 REMARK 3 L13: 0.3623 L23: 0.3732 REMARK 3 S TENSOR REMARK 3 S11: 0.4825 S12: -0.7007 S13: -0.1189 REMARK 3 S21: 0.7984 S22: -0.4072 S23: 0.4624 REMARK 3 S31: 0.4454 S32: -0.5371 S33: -0.0134 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MAO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17033 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 37.096 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.282 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.9800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.22 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: APO STRUCTURE, 6MAI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOLECULAR DIMENSIONS MORPHEUS SCREEN, REMARK 280 CONDITION C4: 12.5% W/V PEG 1000, 12.5% W/V PEG 3350, 12.5% V/V REMARK 280 MPD 30MM EACH SODIUM NITRATE, DISODIUM HYDROGEN PHOSPHATE, REMARK 280 AMMONIUM SULFATE: 100MM MES/IMIDAZOLE PH 6.5: REMARK 280 LEPNA.01206.A.B1.PS38438 AT 24.33MG/ML: 2H SOAK WITH 5MM MGCL2 + REMARK 280 DUTP WITH WAS CONVERTED TO DUMP: CRYO: DIRECT: EG IN TWO STEPS: REMARK 280 TRAY 301633A1, PUCK PXP9-8, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 285K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.73000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 27.73000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 27.73000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -123.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -42.83500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 74.19240 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -85.67000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 427 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 139 REMARK 465 SER A 140 REMARK 465 ARG A 141 REMARK 465 GLY A 142 REMARK 465 GLU A 143 REMARK 465 GLY A 144 REMARK 465 GLY A 145 REMARK 465 PHE A 146 REMARK 465 GLY A 147 REMARK 465 SER A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 ARG A 151 REMARK 465 TYR A 152 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 16 -79.56 -105.22 REMARK 500 CYS A 36 75.14 -113.15 REMARK 500 GLN A 46 -1.58 72.24 REMARK 500 ALA A 60 -45.10 73.97 REMARK 500 VAL A 81 -154.82 -133.11 REMARK 500 LEU A 85 -56.95 72.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue UMP A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-LEPNA.01206.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 6MAI RELATED DB: PDB REMARK 900 APO STRUTURE DBREF 6MAO A 1 152 UNP Q5ZSN0 DUT_LEGPH 1 152 SEQADV 6MAO MET A -7 UNP Q5ZSN0 INITIATING METHIONINE SEQADV 6MAO ALA A -6 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A -5 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A -4 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A -3 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A -2 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A -1 UNP Q5ZSN0 EXPRESSION TAG SEQADV 6MAO HIS A 0 UNP Q5ZSN0 EXPRESSION TAG SEQRES 1 A 160 MET ALA HIS HIS HIS HIS HIS HIS MET HIS GLN VAL ILE SEQRES 2 A 160 GLN LEU LYS ILE LEU ASP SER ARG ILE GLY ASP THR ILE SEQRES 3 A 160 PRO LEU PRO ALA TYR ALA THR ASP GLY SER ALA GLY LEU SEQRES 4 A 160 ASP LEU ARG VAL CYS ILE SER GLU PRO MET GLN VAL ALA SEQRES 5 A 160 PRO GLN GLN THR VAL LEU LEU PRO THR GLY ILE ALA ILE SEQRES 6 A 160 TYR ILE ALA ASP PRO LYS LEU ALA ALA VAL ILE LEU PRO SEQRES 7 A 160 ARG SER GLY LEU GLY HIS LYS ASN GLY ILE VAL LEU GLY SEQRES 8 A 160 ASN LEU VAL GLY LEU ILE ASP SER ASP TYR GLN GLY GLU SEQRES 9 A 160 LEU LYS ILE SER CYS TRP ASN ARG SER GLN GLU HIS PHE SEQRES 10 A 160 THR VAL ASN PRO GLY ASP ARG ILE ALA GLN LEU VAL PHE SEQRES 11 A 160 ILE PRO VAL VAL GLN ALA SER PHE GLU VAL VAL ASN GLU SEQRES 12 A 160 PHE THR GLU SER SER ARG GLY GLU GLY GLY PHE GLY SER SEQRES 13 A 160 SER GLY ARG TYR HET UMP A 201 20 HET MPD A 202 8 HET SO4 A 203 5 HETNAM UMP 2'-DEOXYURIDINE 5'-MONOPHOSPHATE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM SO4 SULFATE ION HETSYN UMP DUMP FORMUL 2 UMP C9 H13 N2 O8 P FORMUL 3 MPD C6 H14 O2 FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *134(H2 O) HELIX 1 AA1 ARG A 71 GLY A 79 1 9 SHEET 1 AA1 4 GLN A 6 ILE A 9 0 SHEET 2 AA1 4 THR A 48 TYR A 58 -1 O ALA A 56 N LYS A 8 SHEET 3 AA1 4 GLU A 96 ASN A 103 -1 O ILE A 99 N LEU A 51 SHEET 4 AA1 4 ILE A 80 LEU A 82 -1 N VAL A 81 O TRP A 102 SHEET 1 AA2 4 LEU A 31 ARG A 34 0 SHEET 2 AA2 4 ARG A 116 PRO A 124 -1 O LEU A 120 N LEU A 31 SHEET 3 AA2 4 LEU A 64 PRO A 70 -1 N LEU A 69 O GLN A 119 SHEET 4 AA2 4 GLY A 87 ILE A 89 -1 O ILE A 89 N ALA A 66 SHEET 1 AA3 2 MET A 41 VAL A 43 0 SHEET 2 AA3 2 PHE A 109 VAL A 111 -1 O VAL A 111 N MET A 41 SITE 1 AC1 14 SER A 72 ASN A 84 GLY A 87 LEU A 88 SITE 2 AC1 14 ILE A 89 ASP A 90 TYR A 93 LYS A 98 SITE 3 AC1 14 MPD A 202 HOH A 301 HOH A 315 HOH A 327 SITE 4 AC1 14 HOH A 352 HOH A 382 SITE 1 AC2 3 SER A 72 LYS A 77 UMP A 201 SITE 1 AC3 3 ARG A 34 ARG A 116 HOH A 311 CRYST1 85.670 85.670 55.460 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011673 0.006739 0.000000 0.00000 SCALE2 0.000000 0.013478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018031 0.00000