HEADER TRANSFERASE/STRUCTURAL PROTEIN 30-AUG-18 6MBL TITLE SETD3, A HISTIDINE METHYLTRANSFERASE, IN COMPLEX WITH AN ACTIN PEPTIDE TITLE 2 AND SAH, SECOND P212121 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACTIN PEPTIDE; COMPND 3 CHAIN: Y; COMPND 4 FRAGMENT: RESIDUES 66-80; COMPND 5 SYNONYM: BETA-ACTIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HISTONE-LYSINE N-METHYLTRANSFERASE SETD3; COMPND 9 CHAIN: A; COMPND 10 SYNONYM: SET DOMAIN-CONTAINING PROTEIN 3; COMPND 11 EC: 2.1.1.43; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 8 ORGANISM_COMMON: HUMAN; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 GENE: SETD3, C14ORF154; SOURCE 11 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 12 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 13 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS TRANSFERASE, TRANSFERASE-STRUCTURAL PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,S.DAI,X.CHENG REVDAT 5 11-OCT-23 6MBL 1 REMARK REVDAT 4 01-JAN-20 6MBL 1 REMARK REVDAT 3 13-NOV-19 6MBL 1 JRNL REVDAT 2 16-JAN-19 6MBL 1 JRNL REVDAT 1 19-DEC-18 6MBL 0 JRNL AUTH A.W.WILKINSON,J.DIEP,S.DAI,S.LIU,Y.S.OOI,D.SONG,T.M.LI, JRNL AUTH 2 J.R.HORTON,X.ZHANG,C.LIU,D.V.TRIVEDI,K.M.RUPPEL, JRNL AUTH 3 J.G.VILCHES-MOURE,K.M.CASEY,J.MAK,T.COWAN,J.E.ELIAS, JRNL AUTH 4 C.M.NAGAMINE,J.A.SPUDICH,X.CHENG,J.E.CARETTE,O.GOZANI JRNL TITL SETD3 IS AN ACTIN HISTIDINE METHYLTRANSFERASE THAT PREVENTS JRNL TITL 2 PRIMARY DYSTOCIA. JRNL REF NATURE V. 565 372 2019 JRNL REFN ESSN 1476-4687 JRNL PMID 30626964 JRNL DOI 10.1038/S41586-018-0821-8 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 30334 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.3106 - 4.8838 0.99 2802 149 0.1711 0.1998 REMARK 3 2 4.8838 - 3.8770 1.00 2698 141 0.1421 0.1651 REMARK 3 3 3.8770 - 3.3870 1.00 2660 141 0.1656 0.2196 REMARK 3 4 3.3870 - 3.0774 0.99 2650 139 0.1930 0.2449 REMARK 3 5 3.0774 - 2.8569 1.00 2615 138 0.1908 0.2430 REMARK 3 6 2.8569 - 2.6885 1.00 2623 138 0.1936 0.2703 REMARK 3 7 2.6885 - 2.5538 1.00 2623 138 0.2056 0.2579 REMARK 3 8 2.5538 - 2.4427 1.00 2607 138 0.2072 0.2594 REMARK 3 9 2.4427 - 2.3486 1.00 2612 137 0.2279 0.2945 REMARK 3 10 2.3486 - 2.2676 0.99 2583 136 0.2457 0.3021 REMARK 3 11 2.2676 - 2.1967 0.90 2341 125 0.2770 0.3408 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4209 REMARK 3 ANGLE : 0.683 5698 REMARK 3 CHIRALITY : 0.042 622 REMARK 3 PLANARITY : 0.004 729 REMARK 3 DIHEDRAL : 16.879 2549 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'Y' AND (RESID 66 THROUGH 80 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3572 14.5038 30.1804 REMARK 3 T TENSOR REMARK 3 T11: 0.2042 T22: 0.1967 REMARK 3 T33: 0.2562 T12: -0.0065 REMARK 3 T13: -0.0239 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 6.2087 L22: 6.0259 REMARK 3 L33: 8.7552 L12: 1.6804 REMARK 3 L13: -2.2084 L23: 0.3455 REMARK 3 S TENSOR REMARK 3 S11: -0.0355 S12: -0.5731 S13: 0.1155 REMARK 3 S21: 0.2571 S22: -0.0655 S23: -0.0239 REMARK 3 S31: 0.2094 S32: 0.3626 S33: 0.1867 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.2252 2.4841 24.2450 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.3152 REMARK 3 T33: 0.4679 T12: 0.0625 REMARK 3 T13: -0.0088 T23: 0.0386 REMARK 3 L TENSOR REMARK 3 L11: 4.2510 L22: 5.5803 REMARK 3 L33: 5.3454 L12: 2.4165 REMARK 3 L13: 2.0772 L23: 2.3565 REMARK 3 S TENSOR REMARK 3 S11: 0.1124 S12: 0.2352 S13: -0.5697 REMARK 3 S21: 0.0059 S22: 0.1106 S23: -0.5221 REMARK 3 S31: 0.2630 S32: 0.4788 S33: -0.3079 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8197 18.9421 10.0566 REMARK 3 T TENSOR REMARK 3 T11: 0.4017 T22: 0.5242 REMARK 3 T33: 0.3491 T12: 0.0639 REMARK 3 T13: -0.1233 T23: 0.0444 REMARK 3 L TENSOR REMARK 3 L11: 4.1433 L22: 3.5229 REMARK 3 L33: 1.7516 L12: -1.7492 REMARK 3 L13: -0.2871 L23: 0.4246 REMARK 3 S TENSOR REMARK 3 S11: 0.2590 S12: 0.9006 S13: 0.1912 REMARK 3 S21: -0.7717 S22: -0.3035 S23: 0.4665 REMARK 3 S31: -0.3089 S32: -0.1982 S33: 0.0455 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5603 5.2873 21.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.1924 T22: 0.2068 REMARK 3 T33: 0.2439 T12: 0.0402 REMARK 3 T13: 0.0244 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 4.6177 L22: 2.6609 REMARK 3 L33: 1.6978 L12: 0.9341 REMARK 3 L13: 0.9525 L23: 0.2554 REMARK 3 S TENSOR REMARK 3 S11: 0.0739 S12: 0.3536 S13: -0.4628 REMARK 3 S21: -0.1636 S22: -0.0485 S23: 0.0475 REMARK 3 S31: 0.2067 S32: 0.0217 S33: -0.0205 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.6942 16.1740 22.3893 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.2024 REMARK 3 T33: 0.2741 T12: 0.0025 REMARK 3 T13: -0.0482 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 4.7367 L22: 1.8399 REMARK 3 L33: 2.5470 L12: -0.6112 REMARK 3 L13: -0.3093 L23: 0.5990 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: 0.2236 S13: 0.0405 REMARK 3 S21: -0.0534 S22: -0.0654 S23: 0.4386 REMARK 3 S31: -0.0476 S32: -0.1636 S33: 0.0753 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 335 THROUGH 408 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2753 24.7345 57.0144 REMARK 3 T TENSOR REMARK 3 T11: 0.4306 T22: 0.3416 REMARK 3 T33: 0.2653 T12: 0.0774 REMARK 3 T13: 0.0253 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 4.2251 L22: 1.6782 REMARK 3 L33: 6.3226 L12: 1.5302 REMARK 3 L13: -4.2251 L23: -2.1622 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.7202 S13: 0.0031 REMARK 3 S21: 0.3233 S22: 0.0689 S23: -0.0435 REMARK 3 S31: 0.1247 S32: 0.4466 S33: 0.0625 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 409 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6365 35.2342 43.3387 REMARK 3 T TENSOR REMARK 3 T11: 0.5107 T22: 0.3149 REMARK 3 T33: 0.4835 T12: -0.1049 REMARK 3 T13: 0.0601 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 1.9330 L22: 2.1187 REMARK 3 L33: 2.9266 L12: 0.2109 REMARK 3 L13: -0.7739 L23: -0.3974 REMARK 3 S TENSOR REMARK 3 S11: 0.2724 S12: -0.4011 S13: 0.5766 REMARK 3 S21: 0.5222 S22: -0.0561 S23: 0.1435 REMARK 3 S31: -0.9239 S32: 0.3130 S33: -0.2760 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MBL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-AUG-18. REMARK 100 THE DEPOSITION ID IS D_1000236560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 48.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3SMT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM CHLORIDE, 0.1 M BIS-TRIS REMARK 280 PH 5.5, 25% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.27850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.81750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 55.81750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.27850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.41500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: Y, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 PRO A -4 REMARK 465 LEU A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 SER A 4 REMARK 465 ARG A 5 REMARK 465 VAL A 6 REMARK 465 LYS A 7 REMARK 465 THR A 8 REMARK 465 GLN A 9 REMARK 465 LYS A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 THR A 13 REMARK 465 GLY A 14 REMARK 465 ALA A 15 REMARK 465 THR A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 VAL A 19 REMARK 465 TYR A 501 REMARK 465 GLU A 502 REMARK 465 GLU A 503 REMARK 465 SER A 504 REMARK 465 ASN A 505 REMARK 465 LEU A 506 REMARK 465 GLY A 507 REMARK 465 LEU A 508 REMARK 465 LEU A 509 REMARK 465 GLU A 510 REMARK 465 SER A 511 REMARK 465 SER A 512 REMARK 465 VAL A 513 REMARK 465 GLY A 514 REMARK 465 ASP A 515 REMARK 465 SER A 516 REMARK 465 ARG A 517 REMARK 465 LEU A 518 REMARK 465 PRO A 519 REMARK 465 LEU A 520 REMARK 465 VAL A 521 REMARK 465 LEU A 522 REMARK 465 ARG A 523 REMARK 465 ASN A 524 REMARK 465 LEU A 525 REMARK 465 GLU A 526 REMARK 465 GLU A 527 REMARK 465 GLU A 528 REMARK 465 ALA A 529 REMARK 465 GLY A 530 REMARK 465 VAL A 531 REMARK 465 GLN A 532 REMARK 465 ASP A 533 REMARK 465 ALA A 534 REMARK 465 LEU A 535 REMARK 465 ASN A 536 REMARK 465 ILE A 537 REMARK 465 ARG A 538 REMARK 465 GLU A 539 REMARK 465 ALA A 540 REMARK 465 ILE A 541 REMARK 465 SER A 542 REMARK 465 LYS A 543 REMARK 465 ALA A 544 REMARK 465 LYS A 545 REMARK 465 ALA A 546 REMARK 465 THR A 547 REMARK 465 GLU A 548 REMARK 465 ASN A 549 REMARK 465 GLY A 550 REMARK 465 LEU A 551 REMARK 465 VAL A 552 REMARK 465 ASN A 553 REMARK 465 GLY A 554 REMARK 465 GLU A 555 REMARK 465 ASN A 556 REMARK 465 SER A 557 REMARK 465 ILE A 558 REMARK 465 PRO A 559 REMARK 465 ASN A 560 REMARK 465 GLY A 561 REMARK 465 THR A 562 REMARK 465 ARG A 563 REMARK 465 SER A 564 REMARK 465 GLU A 565 REMARK 465 ASN A 566 REMARK 465 GLU A 567 REMARK 465 SER A 568 REMARK 465 LEU A 569 REMARK 465 ASN A 570 REMARK 465 GLN A 571 REMARK 465 GLU A 572 REMARK 465 SER A 573 REMARK 465 LYS A 574 REMARK 465 ARG A 575 REMARK 465 ALA A 576 REMARK 465 VAL A 577 REMARK 465 GLU A 578 REMARK 465 ASP A 579 REMARK 465 ALA A 580 REMARK 465 LYS A 581 REMARK 465 GLY A 582 REMARK 465 SER A 583 REMARK 465 SER A 584 REMARK 465 SER A 585 REMARK 465 ASP A 586 REMARK 465 SER A 587 REMARK 465 THR A 588 REMARK 465 ALA A 589 REMARK 465 GLY A 590 REMARK 465 VAL A 591 REMARK 465 LYS A 592 REMARK 465 GLU A 593 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR Y 66 OG1 CG2 REMARK 470 LYS A 64 CG CD CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 470 HIS A 228 CG ND1 CD2 CE1 NE2 REMARK 470 ASN A 230 CG OD1 ND2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 LYS A 235 CG CD CE NZ REMARK 470 GLU A 414 CD OE1 OE2 REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 LYS A 495 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 228 -137.21 -126.28 REMARK 500 LYS A 231 -9.14 -57.26 REMARK 500 SER A 237 119.14 -161.82 REMARK 500 LEU A 272 -63.62 70.68 REMARK 500 LYS A 344 -8.05 -59.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAH A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1008 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1009 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1010 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 1011 DBREF 6MBL Y 66 80 UNP P60709 ACTB_HUMAN 66 80 DBREF 6MBL A 0 593 UNP Q86TU7 SETD3_HUMAN 1 594 SEQADV 6MBL GLY A -5 UNP Q86TU7 EXPRESSION TAG SEQADV 6MBL PRO A -4 UNP Q86TU7 EXPRESSION TAG SEQADV 6MBL LEU A -3 UNP Q86TU7 EXPRESSION TAG SEQADV 6MBL GLY A -2 UNP Q86TU7 EXPRESSION TAG SEQADV 6MBL SER A -1 UNP Q86TU7 EXPRESSION TAG SEQRES 1 Y 15 THR LEU LYS TYR PRO ILE GLU HIS GLY ILE VAL THR ASN SEQRES 2 Y 15 TRP ASP SEQRES 1 A 599 GLY PRO LEU GLY SER MET GLY LYS LYS SER ARG VAL LYS SEQRES 2 A 599 THR GLN LYS SER GLY THR GLY ALA THR ALA THR VAL SER SEQRES 3 A 599 PRO LYS GLU ILE LEU ASN LEU THR SER GLU LEU LEU GLN SEQRES 4 A 599 LYS CYS SER SER PRO ALA PRO GLY PRO GLY LYS GLU TRP SEQRES 5 A 599 GLU GLU TYR VAL GLN ILE ARG THR LEU VAL GLU LYS ILE SEQRES 6 A 599 ARG LYS LYS GLN LYS GLY LEU SER VAL THR PHE ASP GLY SEQRES 7 A 599 LYS ARG GLU ASP TYR PHE PRO ASP LEU MET LYS TRP ALA SEQRES 8 A 599 SER GLU ASN GLY ALA SER VAL GLU GLY PHE GLU MET VAL SEQRES 9 A 599 ASN PHE LYS GLU GLU GLY PHE GLY LEU ARG ALA THR ARG SEQRES 10 A 599 ASP ILE LYS ALA GLU GLU LEU PHE LEU TRP VAL PRO ARG SEQRES 11 A 599 LYS LEU LEU MET THR VAL GLU SER ALA LYS ASN SER VAL SEQRES 12 A 599 LEU GLY PRO LEU TYR SER GLN ASP ARG ILE LEU GLN ALA SEQRES 13 A 599 MET GLY ASN ILE ALA LEU ALA PHE HIS LEU LEU CYS GLU SEQRES 14 A 599 ARG ALA SER PRO ASN SER PHE TRP GLN PRO TYR ILE GLN SEQRES 15 A 599 THR LEU PRO SER GLU TYR ASP THR PRO LEU TYR PHE GLU SEQRES 16 A 599 GLU ASP GLU VAL ARG TYR LEU GLN SER THR GLN ALA ILE SEQRES 17 A 599 HIS ASP VAL PHE SER GLN TYR LYS ASN THR ALA ARG GLN SEQRES 18 A 599 TYR ALA TYR PHE TYR LYS VAL ILE GLN THR HIS PRO HIS SEQRES 19 A 599 ALA ASN LYS LEU PRO LEU LYS ASP SER PHE THR TYR GLU SEQRES 20 A 599 ASP TYR ARG TRP ALA VAL SER SER VAL MET THR ARG GLN SEQRES 21 A 599 ASN GLN ILE PRO THR GLU ASP GLY SER ARG VAL THR LEU SEQRES 22 A 599 ALA LEU ILE PRO LEU TRP ASP MET CYS ASN HIS THR ASN SEQRES 23 A 599 GLY LEU ILE THR THR GLY TYR ASN LEU GLU ASP ASP ARG SEQRES 24 A 599 CYS GLU CYS VAL ALA LEU GLN ASP PHE ARG ALA GLY GLU SEQRES 25 A 599 GLN ILE TYR ILE PHE TYR GLY THR ARG SER ASN ALA GLU SEQRES 26 A 599 PHE VAL ILE HIS SER GLY PHE PHE PHE ASP ASN ASN SER SEQRES 27 A 599 HIS ASP ARG VAL LYS ILE LYS LEU GLY VAL SER LYS SER SEQRES 28 A 599 ASP ARG LEU TYR ALA MET LYS ALA GLU VAL LEU ALA ARG SEQRES 29 A 599 ALA GLY ILE PRO THR SER SER VAL PHE ALA LEU HIS PHE SEQRES 30 A 599 THR GLU PRO PRO ILE SER ALA GLN LEU LEU ALA PHE LEU SEQRES 31 A 599 ARG VAL PHE CYS MET THR GLU GLU GLU LEU LYS GLU HIS SEQRES 32 A 599 LEU LEU GLY ASP SER ALA ILE ASP ARG ILE PHE THR LEU SEQRES 33 A 599 GLY ASN SER GLU PHE PRO VAL SER TRP ASP ASN GLU VAL SEQRES 34 A 599 LYS LEU TRP THR PHE LEU GLU ASP ARG ALA SER LEU LEU SEQRES 35 A 599 LEU LYS THR TYR LYS THR THR ILE GLU GLU ASP LYS SER SEQRES 36 A 599 VAL LEU LYS ASN HIS ASP LEU SER VAL ARG ALA LYS MET SEQRES 37 A 599 ALA ILE LYS LEU ARG LEU GLY GLU LYS GLU ILE LEU GLU SEQRES 38 A 599 LYS ALA VAL LYS SER ALA ALA VAL ASN ARG GLU TYR TYR SEQRES 39 A 599 ARG GLN GLN MET GLU GLU LYS ALA PRO LEU PRO LYS TYR SEQRES 40 A 599 GLU GLU SER ASN LEU GLY LEU LEU GLU SER SER VAL GLY SEQRES 41 A 599 ASP SER ARG LEU PRO LEU VAL LEU ARG ASN LEU GLU GLU SEQRES 42 A 599 GLU ALA GLY VAL GLN ASP ALA LEU ASN ILE ARG GLU ALA SEQRES 43 A 599 ILE SER LYS ALA LYS ALA THR GLU ASN GLY LEU VAL ASN SEQRES 44 A 599 GLY GLU ASN SER ILE PRO ASN GLY THR ARG SER GLU ASN SEQRES 45 A 599 GLU SER LEU ASN GLN GLU SER LYS ARG ALA VAL GLU ASP SEQRES 46 A 599 ALA LYS GLY SER SER SER ASP SER THR ALA GLY VAL LYS SEQRES 47 A 599 GLU HET SAH A1001 26 HET EDO A1002 4 HET EDO A1003 4 HET EDO A1004 4 HET EDO A1005 4 HET EDO A1006 4 HET EDO A1007 4 HET EDO A1008 4 HET EDO A1009 4 HET EDO A1010 4 HET EDO A1011 4 HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SAH C14 H20 N6 O5 S FORMUL 4 EDO 10(C2 H6 O2) FORMUL 14 HOH *139(H2 O) HELIX 1 AA1 PRO A 21 SER A 36 1 16 HELIX 2 AA2 GLY A 41 GLY A 43 5 3 HELIX 3 AA3 LYS A 44 LYS A 62 1 19 HELIX 4 AA4 LYS A 73 ASP A 76 5 4 HELIX 5 AA5 TYR A 77 ASN A 88 1 12 HELIX 6 AA6 LYS A 125 LEU A 127 5 3 HELIX 7 AA7 VAL A 130 ASN A 135 1 6 HELIX 8 AA8 LEU A 138 ASP A 145 1 8 HELIX 9 AA9 ASP A 145 MET A 151 1 7 HELIX 10 AB1 MET A 151 ALA A 165 1 15 HELIX 11 AB2 TRP A 171 GLN A 176 1 6 HELIX 12 AB3 THR A 184 PHE A 188 5 5 HELIX 13 AB4 GLU A 189 TYR A 195 1 7 HELIX 14 AB5 ALA A 201 HIS A 226 1 26 HELIX 15 AB6 LEU A 232 ASP A 236 5 5 HELIX 16 AB7 THR A 239 GLN A 254 1 16 HELIX 17 AB8 LEU A 272 CYS A 276 5 5 HELIX 18 AB9 SER A 316 GLY A 325 1 10 HELIX 19 AC1 LEU A 348 ALA A 359 1 12 HELIX 20 AC2 SER A 377 CYS A 388 1 12 HELIX 21 AC3 THR A 390 HIS A 397 1 8 HELIX 22 AC4 SER A 402 THR A 409 1 8 HELIX 23 AC5 SER A 418 LYS A 438 1 21 HELIX 24 AC6 THR A 443 HIS A 454 1 12 HELIX 25 AC7 SER A 457 LYS A 495 1 39 SHEET 1 AA1 4 PHE A 95 PHE A 100 0 SHEET 2 AA1 4 GLY A 104 ALA A 109 -1 O GLY A 104 N PHE A 100 SHEET 3 AA1 4 GLN A 307 ILE A 310 -1 O ILE A 308 N LEU A 107 SHEET 4 AA1 4 ASN A 277 HIS A 278 1 N ASN A 277 O ILE A 310 SHEET 1 AA2 3 LEU A 118 PRO A 123 0 SHEET 2 AA2 3 ARG A 293 VAL A 297 -1 O CYS A 294 N VAL A 122 SHEET 3 AA2 3 THR A 285 ASN A 288 -1 N ASN A 288 O ARG A 293 SHEET 1 AA3 3 MET A 128 THR A 129 0 SHEET 2 AA3 3 VAL A 265 LEU A 269 -1 O LEU A 269 N MET A 128 SHEET 3 AA3 3 ASN A 255 PRO A 258 -1 N ILE A 257 O THR A 266 SHEET 1 AA4 2 ARG A 335 GLY A 341 0 SHEET 2 AA4 2 SER A 364 HIS A 370 -1 O PHE A 367 N ILE A 338 CISPEP 1 PRO A 227 HIS A 228 0 -1.43 CISPEP 2 GLU A 373 PRO A 374 0 -4.55 SITE 1 AC1 19 ARG A 74 GLU A 102 GLU A 103 PHE A 105 SITE 2 AC1 19 THR A 252 ARG A 253 ASP A 274 MET A 275 SITE 3 AC1 19 CYS A 276 ASN A 277 HIS A 278 TYR A 312 SITE 4 AC1 19 SER A 324 PHE A 326 EDO A1005 HOH A1135 SITE 5 AC1 19 HOH A1176 HOH A1202 HIS Y 73 SITE 1 AC2 7 PRO A 40 GLU A 45 GLU A 48 HIS A 203 SITE 2 AC2 7 SER A 207 EDO A1003 HOH A1153 SITE 1 AC3 5 SER A 207 LYS A 210 ASN A 211 ARG A 214 SITE 2 AC3 5 EDO A1002 SITE 1 AC4 6 PHE A 70 ARG A 164 ILE A 175 LEU A 178 SITE 2 AC4 6 SER A 180 HOH A1138 SITE 1 AC5 3 GLU A 103 SAH A1001 HOH A1103 SITE 1 AC6 3 THR A 443 ILE A 444 HOH A1129 SITE 1 AC7 4 ASP A 80 LYS A 83 TRP A 84 GLU A 87 SITE 1 AC8 5 LEU A 340 GLY A 341 PHE A 408 ARG A 432 SITE 2 AC8 5 EDO A1010 SITE 1 AC9 5 ALA A 90 SER A 91 VAL A 92 GLU A 93 SITE 2 AC9 5 TRP A 121 SITE 1 AD1 6 LYS A 339 ILE A 404 ASP A 405 PHE A 408 SITE 2 AD1 6 ARG A 432 EDO A1008 SITE 1 AD2 5 ASP A 334 PHE A 371 GLU A 472 ILE A 473 SITE 2 AD2 5 HOH A1168 CRYST1 56.557 92.830 111.635 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017681 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010772 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008958 0.00000