data_6MCE # _entry.id 6MCE # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.319 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 6MCE WWPDB D_1000236634 BMRB 30510 # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'Solution structure of HIV-1 TAR with Tat RNA Binding Domain' _pdbx_database_related.db_id 30510 _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr REL _pdbx_database_status.entry_id 6MCE _pdbx_database_status.recvd_initial_deposition_date 2018-08-31 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Pham, V.V.' 1 0000-0002-3981-404X ;D'Souza, V.M. ; 2 0000-0002-5397-9481 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Commun' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2041-1723 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 9 _citation.language ? _citation.page_first 4266 _citation.page_last 4266 _citation.title 'HIV-1 Tat interactions with cellular 7SK and viral TAR RNAs identifies dual structural mimicry.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/s41467-018-06591-6 _citation.pdbx_database_id_PubMed 30323330 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pham, V.V.' 1 ? primary 'Salguero, C.' 2 ? primary 'Khan, S.N.' 3 ? primary 'Meagher, J.L.' 4 ? primary 'Brown, W.C.' 5 ? primary 'Humbert, N.' 6 ? primary 'de Rocquigny, H.' 7 ? primary 'Smith, J.L.' 8 ? primary ;D'Souza, V.M. ; 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'TAR RNA' 9652.762 1 ? ? ? ? 2 polymer syn 'Protein Tat' 2162.533 1 ? ? 'RNA Binding Domain residues 44-60' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'Transactivating regulatory protein' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no GGGCAGAUUGAGCCUGGGAGCUCUCUGCCC GGGCAGAUUGAGCCUGGGAGCUCUCUGCCC A ? 2 'polypeptide(L)' no no GISYGRKKRRQRRRAHQ GISYGRKKRRQRRRAHQ B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 C n 1 5 A n 1 6 G n 1 7 A n 1 8 U n 1 9 U n 1 10 G n 1 11 A n 1 12 G n 1 13 C n 1 14 C n 1 15 U n 1 16 G n 1 17 G n 1 18 G n 1 19 A n 1 20 G n 1 21 C n 1 22 U n 1 23 C n 1 24 U n 1 25 C n 1 26 U n 1 27 G n 1 28 C n 1 29 C n 1 30 C n 2 1 GLY n 2 2 ILE n 2 3 SER n 2 4 TYR n 2 5 GLY n 2 6 ARG n 2 7 LYS n 2 8 LYS n 2 9 ARG n 2 10 ARG n 2 11 GLN n 2 12 ARG n 2 13 ARG n 2 14 ARG n 2 15 ALA n 2 16 HIS n 2 17 GLN n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample 1 30 'Human immunodeficiency virus 1' Human 11676 ? 2 1 sample 1 17 'Human immunodeficiency virus type 1 group M subtype B' HIV-1 11706 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 PDB 6MCE 6MCE ? 1 ? 1 2 UNP TAT_HV1H2 P04608 ? 2 GISYGRKKRRQRRRAHQ 44 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6MCE A 1 ? 30 ? 6MCE 16 ? 46 ? 16 46 2 2 6MCE B 1 ? 17 ? P04608 44 ? 60 ? 44 60 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D 1H-1H NOESY' 1 isotropic 2 1 3 '2D 1H-1H NOESY' 1 isotropic 3 1 2 '2D 1H-15N HSQC' 1 isotropic 4 1 4 '2D 1H-13C HSQC' 1 isotropic 5 1 4 '2D 1H-13C HSQC' 1 anisotropic # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units Pa _pdbx_nmr_exptl_sample_conditions.pressure 100000 _pdbx_nmr_exptl_sample_conditions.pH 5.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10mM NaCl, 70mM NaCl, 0.1mM EDTA' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label 'TAR Buffer' _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system _pdbx_nmr_sample_details.label _pdbx_nmr_sample_details.type _pdbx_nmr_sample_details.details 1 '0.5 mM TAR RNA with deuterated NTPs in a combo of either AC, GU, or GA, 0.5 mM Tat RNA Binding Domain, 90% H2O/10% D2O' '90% H2O/10% D2O' TAR:Tat-1 solution ? 3 '0.5 mM TAR RNA deuterated NTPs in a combo of either AC, GU, or GA, 0.5 mM Tat RNA Binding Domain, 100% D2O' '100% D2O' TAR:Tat-3 solution ? 2 '0.5 mM [U-13C; U-15N] TAR RNA, 0.5 mM Tat RNA Binding Domain, 90% H2O/10% D2O' '90% H2O/10% D2O' TAR:Tat-2 solution ? 4 ;0.5 mM TAR RNA, 0.5 mM [U-13C; U-15N] Tat RNA Binding Domain selectively labeled in each of the peptides: 1) R49, K50, R57, A58 2) K51, R52, Q54,R55 3) R53, Q54, R56, 100% D2O ; '100% D2O' TAR:Tat-4 solution ? # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DMX _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details ? # _pdbx_nmr_refine.entry_id 6MCE _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 7 # _pdbx_nmr_ensemble.entry_id 6MCE _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with acceptable covalent geometry' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 6MCE _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'fewest violations' # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 collection TopSpin ? 'Bruker Biospin' 2 'peak picking' NMRView ? 'Johnson, One Moon Scientific' 3 'chemical shift assignment' NMRView ? 'Johnson, One Moon Scientific' 4 'data analysis' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 5 processing CYANA ? 'Guntert, Mumenthaler and Wuthrich' 6 'structure calculation' CYANA ? 'Guntert, Mumenthaler and Wuthrich' 7 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, and Kollman' # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6MCE _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 6MCE _struct.title 'Solution structure of HIV-1 TAR with Tat RNA Binding Domain' _struct.pdbx_descriptor 'Protein Tat/RNA Complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6MCE _struct_keywords.text 'Transcription, RNA BINDING PROTEIN' _struct_keywords.pdbx_keywords TRANSCRIPTION # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 30 N3 ? ? A G 16 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 30 O2 ? ? A G 16 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 30 N4 ? ? A G 16 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 29 N3 ? ? A G 17 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 29 O2 ? ? A G 17 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 29 N4 ? ? A G 17 A C 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 18 A C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 27 N1 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 27 O6 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 27 N2 ? ? A C 19 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 26 N3 ? ? A A 20 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 26 O4 ? ? A A 20 A U 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 A C 25 N3 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 A C 25 O2 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 A C 25 N4 ? ? A G 21 A C 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 24 N3 ? ? A A 22 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 24 O4 ? ? A A 22 A U 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 11 N7 ? ? A U 23 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog21 hydrog ? ? A U 8 O4 ? ? ? 1_555 A A 11 N6 ? ? A U 23 A A 27 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog22 hydrog ? ? A G 10 N1 ? ? ? 1_555 A C 23 N3 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A G 10 N2 ? ? ? 1_555 A C 23 O2 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 A C 23 N4 ? ? A G 26 A C 39 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A A 11 N1 ? ? ? 1_555 A U 22 N3 ? ? A A 27 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog26 hydrog ? ? A A 11 N6 ? ? ? 1_555 A U 22 O4 ? ? A A 27 A U 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 28 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 20 N1 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 20 O6 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 20 N2 ? ? A C 29 A G 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 18 N1 ? ? A C 30 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 18 O6 ? ? A C 30 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 18 N2 ? ? A C 30 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? A U 15 N3 ? ? ? 1_555 A G 18 O6 ? ? A U 31 A G 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog37 hydrog ? ? A U 15 O2 ? ? ? 1_555 A G 18 N1 ? ? A U 31 A G 34 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 6MCE _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 16 16 G G A . n A 1 2 G 2 17 17 G G A . n A 1 3 G 3 18 18 G G A . n A 1 4 C 4 19 19 C C A . n A 1 5 A 5 20 20 A A A . n A 1 6 G 6 21 21 G G A . n A 1 7 A 7 22 22 A A A . n A 1 8 U 8 23 23 U U A . n A 1 9 U 9 25 25 U U A . n A 1 10 G 10 26 26 G G A . n A 1 11 A 11 27 27 A A A . n A 1 12 G 12 28 28 G G A . n A 1 13 C 13 29 29 C C A . n A 1 14 C 14 30 30 C C A . n A 1 15 U 15 31 31 U U A . n A 1 16 G 16 32 32 G G A . n A 1 17 G 17 33 33 G G A . n A 1 18 G 18 34 34 G G A . n A 1 19 A 19 35 35 A A A . n A 1 20 G 20 36 36 G G A . n A 1 21 C 21 37 37 C C A . n A 1 22 U 22 38 38 U U A . n A 1 23 C 23 39 39 C C A . n A 1 24 U 24 40 40 U U A . n A 1 25 C 25 41 41 C C A . n A 1 26 U 26 42 42 U U A . n A 1 27 G 27 43 43 G G A . n A 1 28 C 28 44 44 C C A . n A 1 29 C 29 45 45 C C A . n A 1 30 C 30 46 46 C C A . n B 2 1 GLY 1 44 44 GLY GLY B . n B 2 2 ILE 2 45 45 ILE ILE B . n B 2 3 SER 3 46 46 SER SER B . n B 2 4 TYR 4 47 47 TYR TYR B . n B 2 5 GLY 5 48 48 GLY GLY B . n B 2 6 ARG 6 49 49 ARG ARG B . n B 2 7 LYS 7 50 50 LYS LYS B . n B 2 8 LYS 8 51 51 LYS LYS B . n B 2 9 ARG 9 52 52 ARG ARG B . n B 2 10 ARG 10 53 53 ARG ARG B . n B 2 11 GLN 11 54 54 GLN GLN B . n B 2 12 ARG 12 55 55 ARG ARG B . n B 2 13 ARG 13 56 56 ARG ARG B . n B 2 14 ARG 14 57 57 ARG ARG B . n B 2 15 ALA 15 58 58 ALA ALA B . n B 2 16 HIS 16 59 59 HIS HIS B . n B 2 17 GLN 17 60 60 GLN GLN B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2050 ? 1 MORE -11 ? 1 'SSA (A^2)' 6660 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-31 2 'Structure model' 1 1 2019-11-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 2 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 2 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 2 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'TAR RNA' 0.5 ? mM 'natural abundance' 1 'Tat RNA Binding Domain' 0.5 ? mM 'natural abundance' 3 'TAR RNA' 0.5 ? mM 'natural abundance' 3 'Tat RNA Binding Domain' 0.5 ? mM 'natural abundance' 2 'TAR RNA' 0.5 ? mM '[U-13C; U-15N]' 2 'Tat RNA Binding Domain' 0.5 ? mM 'natural abundance' 4 'TAR RNA' 0.5 ? mM 'natural abundance' 4 'Tat RNA Binding Domain' 0.5 ? mM '[U-13C; U-15N]' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.06 121.90 -4.84 0.70 N 2 1 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.81 117.00 -3.19 0.50 N 3 1 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.18 117.70 3.48 0.50 N 4 1 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.09 118.60 -4.51 0.60 N 5 1 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.56 117.70 3.86 0.50 N 6 1 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 114.84 118.60 -3.76 0.60 N 7 1 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.38 117.70 3.68 0.50 N 8 1 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.63 118.60 -4.97 0.60 N 9 1 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.58 118.90 3.68 0.60 N 10 1 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.54 121.90 -5.36 0.70 N 11 1 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 116.98 121.90 -4.92 0.70 N 12 1 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.44 117.70 3.74 0.50 N 13 1 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.09 118.60 -5.51 0.60 N 14 1 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.03 121.90 -4.87 0.70 N 15 1 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1 A C 39 ? ? 113.13 108.50 4.63 0.70 N 16 1 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 116.90 121.90 -5.00 0.70 N 17 1 N1 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 122.58 118.90 3.68 0.60 N 18 1 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.65 121.90 -5.25 0.70 N 19 1 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 116.98 121.90 -4.92 0.70 N 20 1 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 117.09 121.90 -4.81 0.70 N 21 1 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.79 121.90 -5.11 0.70 N 22 1 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH1 B ARG 49 ? ? 123.37 120.30 3.07 0.50 N 23 1 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 125.45 120.30 5.15 0.50 N 24 1 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH1 B ARG 56 ? ? 124.73 120.30 4.43 0.50 N 25 2 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.03 121.90 -4.87 0.70 N 26 2 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.71 117.00 -3.29 0.50 N 27 2 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.13 117.70 3.43 0.50 N 28 2 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 113.89 118.60 -4.71 0.60 N 29 2 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.70 117.70 4.00 0.50 N 30 2 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.09 117.70 3.39 0.50 N 31 2 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 114.04 118.60 -4.56 0.60 N 32 2 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.54 121.90 -5.36 0.70 N 33 2 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.12 121.90 -4.78 0.70 N 34 2 "O4'" A G 33 ? ? "C1'" A G 33 ? ? N9 A G 33 ? ? 113.25 108.50 4.75 0.70 N 35 2 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.44 117.70 3.74 0.50 N 36 2 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.14 118.60 -5.46 0.60 N 37 2 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.08 121.90 -4.82 0.70 N 38 2 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1 A C 39 ? ? 112.90 108.50 4.40 0.70 N 39 2 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 116.87 121.90 -5.03 0.70 N 40 2 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 113.02 108.50 4.52 0.70 N 41 2 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.92 121.90 -4.98 0.70 N 42 2 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.19 121.90 -4.71 0.70 N 43 2 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 116.87 121.90 -5.03 0.70 N 44 2 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.92 121.90 -4.98 0.70 N 45 2 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 124.94 120.30 4.64 0.50 N 46 2 NE B ARG 57 ? ? CZ B ARG 57 ? ? NH1 B ARG 57 ? ? 123.46 120.30 3.16 0.50 N 47 3 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.20 121.90 -4.70 0.70 N 48 3 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.86 117.00 -3.14 0.50 N 49 3 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.26 117.70 3.56 0.50 N 50 3 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.51 118.60 -4.09 0.60 N 51 3 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.91 117.70 4.21 0.50 N 52 3 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 114.00 117.00 -3.00 0.50 N 53 3 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.44 117.70 3.74 0.50 N 54 3 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.28 118.60 -5.32 0.60 N 55 3 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.67 118.90 3.77 0.60 N 56 3 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.23 121.90 -5.67 0.70 N 57 3 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 112.98 108.50 4.48 0.70 N 58 3 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.37 121.90 -4.53 0.70 N 59 3 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.40 117.70 3.70 0.50 N 60 3 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.02 118.60 -5.58 0.60 N 61 3 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.30 121.90 -4.60 0.70 N 62 3 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 116.96 121.90 -4.94 0.70 N 63 3 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 112.71 108.50 4.21 0.70 N 64 3 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.85 121.90 -5.05 0.70 N 65 3 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.21 121.90 -4.69 0.70 N 66 3 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 116.97 121.90 -4.93 0.70 N 67 3 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.84 121.90 -5.06 0.70 N 68 3 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH1 B ARG 49 ? ? 123.43 120.30 3.13 0.50 N 69 3 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 124.32 120.30 4.02 0.50 N 70 3 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH1 B ARG 56 ? ? 124.24 120.30 3.94 0.50 N 71 4 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.11 121.90 -4.79 0.70 N 72 4 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.52 117.00 -3.48 0.50 N 73 4 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.49 117.70 3.79 0.50 N 74 4 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 113.36 118.60 -5.24 0.60 N 75 4 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.59 117.70 3.89 0.50 N 76 4 "O4'" A U 23 ? ? "C1'" A U 23 ? ? N1 A U 23 ? ? 112.99 108.50 4.49 0.70 N 77 4 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.90 117.00 -3.10 0.50 N 78 4 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.23 117.70 3.53 0.50 N 79 4 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.25 118.60 -5.35 0.60 N 80 4 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.73 118.90 3.83 0.60 N 81 4 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.46 121.90 -5.44 0.70 N 82 4 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.02 121.90 -4.88 0.70 N 83 4 C4 A A 35 ? ? C5 A A 35 ? ? C6 A A 35 ? ? 114.00 117.00 -3.00 0.50 N 84 4 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.39 117.70 3.69 0.50 N 85 4 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.14 118.60 -5.46 0.60 N 86 4 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.04 121.90 -4.86 0.70 N 87 4 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 117.24 121.90 -4.66 0.70 N 88 4 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.85 121.90 -5.05 0.70 N 89 4 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.29 121.90 -4.61 0.70 N 90 4 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 116.93 121.90 -4.97 0.70 N 91 4 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.72 121.90 -5.18 0.70 N 92 4 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH1 B ARG 49 ? ? 123.44 120.30 3.14 0.50 N 93 4 NE B ARG 52 ? ? CZ B ARG 52 ? ? NH1 B ARG 52 ? ? 124.18 120.30 3.88 0.50 N 94 5 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.00 121.90 -4.90 0.70 N 95 5 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.73 117.00 -3.27 0.50 N 96 5 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.28 117.70 3.58 0.50 N 97 5 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.11 118.60 -4.49 0.60 N 98 5 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.70 117.70 4.00 0.50 N 99 5 "O4'" A U 25 ? ? "C1'" A U 25 ? ? N1 A U 25 ? ? 115.97 108.50 7.47 0.70 N 100 5 N3 A U 25 ? ? C2 A U 25 ? ? O2 A U 25 ? ? 117.43 122.20 -4.77 0.70 N 101 5 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.96 117.00 -3.04 0.50 N 102 5 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.26 117.70 3.56 0.50 N 103 5 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.15 118.60 -5.45 0.60 N 104 5 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.57 118.90 3.67 0.60 N 105 5 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.43 121.90 -5.47 0.70 N 106 5 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.01 121.90 -4.89 0.70 N 107 5 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.50 117.70 3.80 0.50 N 108 5 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.06 118.60 -5.54 0.60 N 109 5 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.00 121.90 -4.90 0.70 N 110 5 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 117.27 121.90 -4.63 0.70 N 111 5 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 113.01 108.50 4.51 0.70 N 112 5 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.88 121.90 -5.02 0.70 N 113 5 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.19 121.90 -4.71 0.70 N 114 5 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 117.07 121.90 -4.83 0.70 N 115 5 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.85 121.90 -5.05 0.70 N 116 5 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH1 B ARG 49 ? ? 123.86 120.30 3.56 0.50 N 117 5 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH2 B ARG 49 ? ? 117.16 120.30 -3.14 0.50 N 118 5 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 124.78 120.30 4.48 0.50 N 119 5 NE B ARG 55 ? ? CZ B ARG 55 ? ? NH1 B ARG 55 ? ? 123.69 120.30 3.39 0.50 N 120 6 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.14 121.90 -4.76 0.70 N 121 6 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.77 117.00 -3.23 0.50 N 122 6 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.02 117.70 3.32 0.50 N 123 6 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.00 118.60 -4.60 0.60 N 124 6 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.62 117.70 3.92 0.50 N 125 6 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.98 117.00 -3.02 0.50 N 126 6 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.52 117.70 3.82 0.50 N 127 6 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.41 118.60 -5.19 0.60 N 128 6 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.65 121.90 -5.25 0.70 N 129 6 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.01 121.90 -4.89 0.70 N 130 6 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.45 117.70 3.75 0.50 N 131 6 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.11 118.60 -5.49 0.60 N 132 6 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 116.97 121.90 -4.93 0.70 N 133 6 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1 A C 39 ? ? 113.28 108.50 4.78 0.70 N 134 6 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 117.15 121.90 -4.75 0.70 N 135 6 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 113.01 108.50 4.51 0.70 N 136 6 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 117.01 121.90 -4.89 0.70 N 137 6 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.23 121.90 -4.67 0.70 N 138 6 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 117.16 121.90 -4.74 0.70 N 139 6 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.80 121.90 -5.10 0.70 N 140 6 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 124.36 120.30 4.06 0.50 N 141 6 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH1 B ARG 56 ? ? 124.43 120.30 4.13 0.50 N 142 7 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.15 121.90 -4.75 0.70 N 143 7 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.68 117.00 -3.32 0.50 N 144 7 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.07 117.70 3.37 0.50 N 145 7 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 113.51 118.60 -5.09 0.60 N 146 7 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.49 117.70 3.79 0.50 N 147 7 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 114.61 118.60 -3.99 0.60 N 148 7 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.34 117.70 3.64 0.50 N 149 7 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.24 118.60 -5.36 0.60 N 150 7 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.60 121.90 -5.30 0.70 N 151 7 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.15 121.90 -4.75 0.70 N 152 7 "O4'" A G 33 ? ? "C1'" A G 33 ? ? N9 A G 33 ? ? 112.76 108.50 4.26 0.70 N 153 7 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.38 117.70 3.68 0.50 N 154 7 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.11 118.60 -5.49 0.60 N 155 7 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.14 121.90 -4.76 0.70 N 156 7 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1 A C 39 ? ? 112.91 108.50 4.41 0.70 N 157 7 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 116.83 121.90 -5.07 0.70 N 158 7 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.81 121.90 -5.09 0.70 N 159 7 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.14 121.90 -4.76 0.70 N 160 7 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 116.99 121.90 -4.91 0.70 N 161 7 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.88 121.90 -5.02 0.70 N 162 7 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 125.55 120.30 5.25 0.50 N 163 7 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH1 B ARG 56 ? ? 124.65 120.30 4.35 0.50 N 164 8 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.02 121.90 -4.88 0.70 N 165 8 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.82 117.00 -3.18 0.50 N 166 8 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.16 117.70 3.46 0.50 N 167 8 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.30 118.60 -4.30 0.60 N 168 8 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.70 117.70 4.00 0.50 N 169 8 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 114.91 118.60 -3.69 0.60 N 170 8 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.93 117.00 -3.07 0.50 N 171 8 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.38 117.70 3.68 0.50 N 172 8 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.42 118.60 -5.18 0.60 N 173 8 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.59 121.90 -5.31 0.70 N 174 8 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 112.88 108.50 4.38 0.70 N 175 8 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.28 121.90 -4.62 0.70 N 176 8 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.44 117.70 3.74 0.50 N 177 8 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.09 118.60 -5.51 0.60 N 178 8 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.03 121.90 -4.87 0.70 N 179 8 "O4'" A C 39 ? ? "C1'" A C 39 ? ? N1 A C 39 ? ? 113.39 108.50 4.89 0.70 N 180 8 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 116.91 121.90 -4.99 0.70 N 181 8 "O4'" A U 40 ? ? "C1'" A U 40 ? ? N1 A U 40 ? ? 113.15 108.50 4.65 0.70 N 182 8 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.83 121.90 -5.07 0.70 N 183 8 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 116.94 121.90 -4.96 0.70 N 184 8 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 116.86 121.90 -5.04 0.70 N 185 8 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.95 121.90 -4.95 0.70 N 186 8 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 124.28 120.30 3.98 0.50 N 187 8 NE B ARG 55 ? ? CZ B ARG 55 ? ? NH1 B ARG 55 ? ? 123.52 120.30 3.22 0.50 N 188 9 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.03 121.90 -4.87 0.70 N 189 9 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.57 117.00 -3.43 0.50 N 190 9 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.84 117.70 4.14 0.50 N 191 9 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 113.36 118.60 -5.24 0.60 N 192 9 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.87 117.70 4.17 0.50 N 193 9 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.93 117.00 -3.07 0.50 N 194 9 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.37 117.70 3.67 0.50 N 195 9 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.25 118.60 -5.35 0.60 N 196 9 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.57 118.90 3.67 0.60 N 197 9 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.49 121.90 -5.41 0.70 N 198 9 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 116.99 121.90 -4.91 0.70 N 199 9 C4 A A 35 ? ? C5 A A 35 ? ? C6 A A 35 ? ? 113.99 117.00 -3.01 0.50 N 200 9 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.43 117.70 3.73 0.50 N 201 9 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.05 118.60 -5.55 0.60 N 202 9 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 116.93 121.90 -4.97 0.70 N 203 9 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 117.21 121.90 -4.69 0.70 N 204 9 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 117.21 121.90 -4.69 0.70 N 205 9 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.04 121.90 -4.86 0.70 N 206 9 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 117.12 121.90 -4.78 0.70 N 207 9 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.77 121.90 -5.13 0.70 N 208 9 NE B ARG 53 ? ? CZ B ARG 53 ? ? NH1 B ARG 53 ? ? 123.79 120.30 3.49 0.50 N 209 9 NE B ARG 56 ? ? CZ B ARG 56 ? ? NH1 B ARG 56 ? ? 123.68 120.30 3.38 0.50 N 210 9 NE B ARG 57 ? ? CZ B ARG 57 ? ? NH1 B ARG 57 ? ? 123.98 120.30 3.68 0.50 N 211 10 N3 A C 19 ? ? C2 A C 19 ? ? O2 A C 19 ? ? 117.11 121.90 -4.79 0.70 N 212 10 C4 A A 20 ? ? C5 A A 20 ? ? C6 A A 20 ? ? 113.72 117.00 -3.28 0.50 N 213 10 C5 A A 20 ? ? C6 A A 20 ? ? N1 A A 20 ? ? 121.28 117.70 3.58 0.50 N 214 10 N1 A A 20 ? ? C6 A A 20 ? ? N6 A A 20 ? ? 114.02 118.60 -4.58 0.60 N 215 10 C5 A A 22 ? ? C6 A A 22 ? ? N1 A A 22 ? ? 121.61 117.70 3.91 0.50 N 216 10 N1 A A 22 ? ? C6 A A 22 ? ? N6 A A 22 ? ? 114.76 118.60 -3.84 0.60 N 217 10 C4 A A 27 ? ? C5 A A 27 ? ? C6 A A 27 ? ? 113.92 117.00 -3.08 0.50 N 218 10 C5 A A 27 ? ? C6 A A 27 ? ? N1 A A 27 ? ? 121.37 117.70 3.67 0.50 N 219 10 N1 A A 27 ? ? C6 A A 27 ? ? N6 A A 27 ? ? 113.53 118.60 -5.07 0.60 N 220 10 N1 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 122.51 118.90 3.61 0.60 N 221 10 N3 A C 29 ? ? C2 A C 29 ? ? O2 A C 29 ? ? 116.47 121.90 -5.43 0.70 N 222 10 "O4'" A C 30 ? ? "C1'" A C 30 ? ? N1 A C 30 ? ? 112.71 108.50 4.21 0.70 N 223 10 N3 A C 30 ? ? C2 A C 30 ? ? O2 A C 30 ? ? 117.14 121.90 -4.76 0.70 N 224 10 "O4'" A G 33 ? ? "C1'" A G 33 ? ? N9 A G 33 ? ? 113.10 108.50 4.60 0.70 N 225 10 C5 A A 35 ? ? C6 A A 35 ? ? N1 A A 35 ? ? 121.45 117.70 3.75 0.50 N 226 10 N1 A A 35 ? ? C6 A A 35 ? ? N6 A A 35 ? ? 113.14 118.60 -5.46 0.60 N 227 10 N3 A C 37 ? ? C2 A C 37 ? ? O2 A C 37 ? ? 117.26 121.90 -4.64 0.70 N 228 10 N3 A C 39 ? ? C2 A C 39 ? ? O2 A C 39 ? ? 117.08 121.90 -4.82 0.70 N 229 10 N3 A C 41 ? ? C2 A C 41 ? ? O2 A C 41 ? ? 116.90 121.90 -5.00 0.70 N 230 10 N3 A C 44 ? ? C2 A C 44 ? ? O2 A C 44 ? ? 117.08 121.90 -4.82 0.70 N 231 10 N3 A C 45 ? ? C2 A C 45 ? ? O2 A C 45 ? ? 117.03 121.90 -4.87 0.70 N 232 10 N3 A C 46 ? ? C2 A C 46 ? ? O2 A C 46 ? ? 116.81 121.90 -5.09 0.70 N 233 10 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH1 B ARG 49 ? ? 123.34 120.30 3.04 0.50 N 234 10 NE B ARG 49 ? ? CZ B ARG 49 ? ? NH2 B ARG 49 ? ? 117.19 120.30 -3.11 0.50 N 235 10 NE B ARG 55 ? ? CZ B ARG 55 ? ? NH1 B ARG 55 ? ? 124.28 120.30 3.98 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 3 ARG B 49 ? ? 37.20 76.22 2 3 ALA B 58 ? ? -140.06 15.91 3 4 GLN B 54 ? ? -134.42 -55.67 4 4 HIS B 59 ? ? -155.78 -41.35 5 6 TYR B 47 ? ? -142.72 14.53 6 6 ARG B 56 ? ? 59.17 -17.37 7 7 LYS B 51 ? ? -62.39 27.06 8 8 SER B 46 ? ? -128.38 -162.17 9 9 GLN B 54 ? ? -122.89 -94.70 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 18 ? ? 0.064 'SIDE CHAIN' 2 1 U A 23 ? ? 0.071 'SIDE CHAIN' 3 1 U A 31 ? ? 0.080 'SIDE CHAIN' 4 1 G A 34 ? ? 0.066 'SIDE CHAIN' 5 2 U A 23 ? ? 0.072 'SIDE CHAIN' 6 2 U A 31 ? ? 0.075 'SIDE CHAIN' 7 2 G A 33 ? ? 0.052 'SIDE CHAIN' 8 2 C A 37 ? ? 0.059 'SIDE CHAIN' 9 3 U A 23 ? ? 0.057 'SIDE CHAIN' 10 3 U A 31 ? ? 0.067 'SIDE CHAIN' 11 3 U A 38 ? ? 0.061 'SIDE CHAIN' 12 4 G A 18 ? ? 0.060 'SIDE CHAIN' 13 4 G A 21 ? ? 0.061 'SIDE CHAIN' 14 4 U A 23 ? ? 0.059 'SIDE CHAIN' 15 4 U A 31 ? ? 0.065 'SIDE CHAIN' 16 5 U A 23 ? ? 0.076 'SIDE CHAIN' 17 5 C A 29 ? ? 0.076 'SIDE CHAIN' 18 5 G A 34 ? ? 0.067 'SIDE CHAIN' 19 5 ARG B 52 ? ? 0.108 'SIDE CHAIN' 20 6 G A 16 ? ? 0.081 'SIDE CHAIN' 21 6 U A 31 ? ? 0.084 'SIDE CHAIN' 22 6 G A 43 ? ? 0.059 'SIDE CHAIN' 23 6 C A 44 ? ? 0.069 'SIDE CHAIN' 24 7 G A 18 ? ? 0.056 'SIDE CHAIN' 25 7 C A 29 ? ? 0.061 'SIDE CHAIN' 26 7 U A 31 ? ? 0.092 'SIDE CHAIN' 27 7 G A 32 ? ? 0.051 'SIDE CHAIN' 28 7 G A 33 ? ? 0.075 'SIDE CHAIN' 29 7 G A 34 ? ? 0.056 'SIDE CHAIN' 30 7 C A 37 ? ? 0.074 'SIDE CHAIN' 31 7 G A 43 ? ? 0.068 'SIDE CHAIN' 32 8 U A 23 ? ? 0.064 'SIDE CHAIN' 33 8 C A 29 ? ? 0.062 'SIDE CHAIN' 34 8 U A 31 ? ? 0.074 'SIDE CHAIN' 35 8 G A 34 ? ? 0.060 'SIDE CHAIN' 36 9 G A 21 ? ? 0.060 'SIDE CHAIN' 37 9 U A 23 ? ? 0.071 'SIDE CHAIN' 38 9 U A 31 ? ? 0.069 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6MCE 'a-form double helix' 6MCE 'hairpin loop' 6MCE 'bulge loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 30 1_555 -0.470 -0.135 -0.029 1.277 -12.599 -0.138 1 A_G16:C46_A A 16 ? A 46 ? 19 1 1 A G 2 1_555 A C 29 1_555 -0.497 -0.174 0.005 -5.443 -12.234 -0.649 2 A_G17:C45_A A 17 ? A 45 ? 19 1 1 A G 3 1_555 A C 28 1_555 -0.292 -0.097 0.137 1.236 -10.393 0.270 3 A_G18:C44_A A 18 ? A 44 ? 19 1 1 A C 4 1_555 A G 27 1_555 0.479 -0.171 -0.016 8.856 -14.765 -1.411 4 A_C19:G43_A A 19 ? A 43 ? 19 1 1 A A 5 1_555 A U 26 1_555 0.216 -0.020 -0.216 -2.755 -16.493 -0.057 5 A_A20:U42_A A 20 ? A 42 ? 20 1 1 A G 6 1_555 A C 25 1_555 -0.223 -0.117 -0.178 -8.384 -10.463 -1.755 6 A_G21:C41_A A 21 ? A 41 ? 19 1 1 A A 7 1_555 A U 24 1_555 -0.059 -0.020 -0.327 -4.170 7.607 -8.339 7 A_A22:U40_A A 22 ? A 40 ? 20 1 1 A G 10 1_555 A C 23 1_555 -0.347 -0.039 0.024 17.078 4.250 0.870 8 A_G26:C39_A A 26 ? A 39 ? 19 1 1 A A 11 1_555 A U 22 1_555 -0.301 -0.164 -0.314 1.915 -7.242 -2.784 9 A_A27:U38_A A 27 ? A 38 ? 20 1 1 A G 12 1_555 A C 21 1_555 0.300 -0.088 -0.521 -13.188 -4.214 -0.809 10 A_G28:C37_A A 28 ? A 37 ? 19 1 1 A C 13 1_555 A G 20 1_555 0.162 -0.024 -0.084 -8.575 5.305 -2.291 11 A_C29:G36_A A 29 ? A 36 ? 19 1 1 A C 14 1_555 A G 18 1_555 0.556 -0.223 -0.562 13.506 8.700 -1.944 12 A_C30:G34_A A 30 ? A 34 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 30 1_555 A G 2 1_555 A C 29 1_555 -0.468 -1.997 3.354 -2.982 9.025 32.587 -4.806 0.347 2.750 15.672 5.178 33.908 1 AA_G16G17:C45C46_AA A 16 ? A 46 ? A 17 ? A 45 ? 1 A G 2 1_555 A C 29 1_555 A G 3 1_555 A C 28 1_555 -0.031 -1.684 3.057 -1.004 6.921 30.570 -4.264 -0.109 2.622 12.915 1.873 31.341 2 AA_G17G18:C44C45_AA A 17 ? A 45 ? A 18 ? A 44 ? 1 A G 3 1_555 A C 28 1_555 A C 4 1_555 A G 27 1_555 -0.318 -1.520 3.130 -0.227 3.644 32.977 -3.233 0.522 2.952 6.394 0.398 33.173 3 AA_G18C19:G43C44_AA A 18 ? A 44 ? A 19 ? A 43 ? 1 A C 4 1_555 A G 27 1_555 A A 5 1_555 A U 26 1_555 0.027 -1.749 3.373 2.345 19.810 30.819 -5.205 0.243 1.934 33.266 -3.938 36.580 4 AA_C19A20:U42G43_AA A 19 ? A 43 ? A 20 ? A 42 ? 1 A A 5 1_555 A U 26 1_555 A G 6 1_555 A C 25 1_555 -0.011 -1.814 3.268 -1.023 12.198 31.396 -4.928 -0.131 2.415 21.544 1.806 33.642 5 AA_A20G21:C41U42_AA A 20 ? A 42 ? A 21 ? A 41 ? 1 A G 6 1_555 A C 25 1_555 A A 7 1_555 A U 24 1_555 -0.636 -1.896 3.203 -0.658 15.051 31.564 -5.118 0.975 2.120 25.904 1.133 34.893 6 AA_G21A22:U40C41_AA A 21 ? A 41 ? A 22 ? A 40 ? 1 A A 7 1_555 A U 24 1_555 A G 10 1_555 A C 23 1_555 -0.656 -1.736 3.034 -1.867 -1.072 31.354 -3.015 0.882 3.123 -1.981 3.449 31.426 7 AA_A22G26:C39U40_AA A 22 ? A 40 ? A 26 ? A 39 ? 1 A G 10 1_555 A C 23 1_555 A A 11 1_555 A U 22 1_555 -0.833 -2.608 3.679 -1.607 7.879 30.235 -6.380 1.232 2.961 14.779 3.015 31.262 8 AA_G26A27:U38C39_AA A 26 ? A 39 ? A 27 ? A 38 ? 1 A A 11 1_555 A U 22 1_555 A G 12 1_555 A C 21 1_555 0.647 -2.292 3.875 5.510 1.156 33.728 -4.117 -0.066 3.851 1.975 -9.415 34.181 9 AA_A27G28:C37U38_AA A 27 ? A 38 ? A 28 ? A 37 ? 1 A G 12 1_555 A C 21 1_555 A C 13 1_555 A G 20 1_555 -0.087 -2.449 3.214 0.500 1.115 27.232 -5.467 0.304 3.111 2.368 -1.061 27.259 10 AA_G28C29:G36C37_AA A 28 ? A 37 ? A 29 ? A 36 ? 1 A C 13 1_555 A G 20 1_555 A C 14 1_555 A G 18 1_555 -0.479 -0.876 2.866 3.829 -0.516 24.144 -1.929 2.166 2.776 -1.224 -9.079 24.446 11 AA_C29C30:G34G36_AA A 29 ? A 36 ? A 30 ? A 34 ? # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)' 'United States' GM103297-01 1 'Howard Hughes Medical Institute (HHMI)' 'United States' 55108516 2 # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'isothermal titration calorimetry' _pdbx_struct_assembly_auth_evidence.details 'Obtain a 1:1 binding ratio in the ITC for the peptide and the RNA under the NMR conditions solved' #