HEADER OXIDOREDUCTASE 02-SEP-18 6MCW TITLE CRYSTAL STRUCTURE OF THE P450 DOMAIN OF THE CYP51-FERREDOXIN FUSION TITLE 2 PROTEIN FROM METHYLOCOCCUS CAPSULATUS, COMPLEX WITH THE DETERGENT TITLE 3 ANAPOE-X-114 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 51; COMPND 3 CHAIN: A; COMPND 4 EC: 1.14.13.70; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOCOCCUS CAPSULATUS (STRAIN ATCC 33009 / SOURCE 3 NCIMB 11132 / BATH); SOURCE 4 ORGANISM_TAXID: 243233; SOURCE 5 STRAIN: ATCC 33009 / NCIMB 11132 / BATH; SOURCE 6 GENE: CYP51, MCA2711; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: HMS-164 KEYWDS CYTOCHROME P450 FOLD, CYP51, HEME, STEROL BIOSYNTHESIS, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.HARGROVE,Z.WAWRZAK,D.C.LAMB,G.I.LEPESHEVA REVDAT 4 11-OCT-23 6MCW 1 REMARK REVDAT 3 20-JAN-21 6MCW 1 JRNL REVDAT 2 01-JAN-20 6MCW 1 REMARK REVDAT 1 10-JUL-19 6MCW 0 JRNL AUTH D.C.LAMB,T.Y.HARGROVE,B.ZHAO,Z.WAWRZAK,J.V.GOLDSTONE, JRNL AUTH 2 W.D.NES,S.L.KELLY,M.R.WATERMAN,J.J.STEGEMAN,G.I.LEPESHEVA JRNL TITL CONCERNING P450 EVOLUTION: STRUCTURAL ANALYSES SUPPORT JRNL TITL 2 BACTERIAL ORIGIN OF STEROL 14 ALPHA-DEMETHYLASES. JRNL REF MOL.BIOL.EVOL. 2020 JRNL REFN ESSN 1537-1719 JRNL PMID 33031537 JRNL DOI 10.1093/MOLBEV/MSAA260 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.96 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 32189 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2405 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 105 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 79 REMARK 3 SOLVENT ATOMS : 36 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 2.68000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.245 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.197 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.185 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.609 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.934 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3781 ; 0.001 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 3412 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5122 ; 0.821 ; 1.696 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8006 ; 0.817 ; 1.654 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 445 ; 8.256 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 223 ;29.993 ;20.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 649 ;17.601 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 42 ;18.308 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 469 ; 0.253 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4238 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 702 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1783 ; 5.311 ; 5.629 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1782 ; 5.299 ; 5.626 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2227 ; 7.790 ; 8.443 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2228 ; 7.788 ; 8.447 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1996 ; 6.070 ; 6.382 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1994 ; 6.071 ; 6.384 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2893 ; 8.961 ; 9.283 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4238 ;12.944 ;67.106 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4236 ;12.946 ;67.100 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6MCW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236668. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07807 REMARK 200 MONOCHROMATOR : SI (III) REMARK 200 OPTICS : FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.40 REMARK 200 R MERGE FOR SHELL (I) : 0.87300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6FMO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, PHOTASSIUM PHOSPHATE, REMARK 280 GLYCEROL, TCEP, PH 7.4, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.10700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 44.21400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 44.21400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.10700 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 ALA A 450 REMARK 465 PRO A 451 REMARK 465 ALA A 452 REMARK 465 ALA A 453 REMARK 465 VAL A 454 REMARK 465 ASP A 455 REMARK 465 ALA A 456 REMARK 465 LYS A 457 REMARK 465 ALA A 458 REMARK 465 SER A 459 REMARK 465 ALA A 460 REMARK 465 GLY A 461 REMARK 465 GLU A 462 REMARK 465 ALA A 463 REMARK 465 PRO A 464 REMARK 465 ALA A 465 REMARK 465 GLU A 466 REMARK 465 THR A 467 REMARK 465 LEU A 468 REMARK 465 ARG A 469 REMARK 465 GLY A 470 REMARK 465 ALA A 471 REMARK 465 PHE A 472 REMARK 465 ARG A 473 REMARK 465 VAL A 474 REMARK 465 THR A 475 REMARK 465 VAL A 476 REMARK 465 ASP A 477 REMARK 465 ARG A 478 REMARK 465 ASP A 479 REMARK 465 LEU A 480 REMARK 465 CYS A 481 REMARK 465 LYS A 482 REMARK 465 GLY A 483 REMARK 465 HIS A 484 REMARK 465 GLY A 485 REMARK 465 ASN A 486 REMARK 465 CYS A 487 REMARK 465 MET A 488 REMARK 465 ALA A 489 REMARK 465 GLU A 490 REMARK 465 ALA A 491 REMARK 465 PRO A 492 REMARK 465 GLU A 493 REMARK 465 ILE A 494 REMARK 465 PHE A 495 REMARK 465 ARG A 496 REMARK 465 VAL A 497 REMARK 465 ASP A 498 REMARK 465 GLU A 499 REMARK 465 ASP A 500 REMARK 465 GLY A 501 REMARK 465 ARG A 502 REMARK 465 LEU A 503 REMARK 465 THR A 504 REMARK 465 LEU A 505 REMARK 465 LEU A 506 REMARK 465 SER A 507 REMARK 465 GLU A 508 REMARK 465 THR A 509 REMARK 465 PRO A 510 REMARK 465 ASP A 511 REMARK 465 PRO A 512 REMARK 465 VAL A 513 REMARK 465 LEU A 514 REMARK 465 VAL A 515 REMARK 465 GLY A 516 REMARK 465 ALA A 517 REMARK 465 ALA A 518 REMARK 465 LEU A 519 REMARK 465 ALA A 520 REMARK 465 ALA A 521 REMARK 465 GLU A 522 REMARK 465 ARG A 523 REMARK 465 PHE A 524 REMARK 465 CYS A 525 REMARK 465 PRO A 526 REMARK 465 ALA A 527 REMARK 465 ARG A 528 REMARK 465 ALA A 529 REMARK 465 ILE A 530 REMARK 465 LYS A 531 REMARK 465 ILE A 532 REMARK 465 LEU A 533 REMARK 465 PRO A 534 REMARK 465 GLN A 535 REMARK 465 ARG A 536 REMARK 465 ASP A 537 REMARK 465 PRO A 538 REMARK 465 ALA A 539 REMARK 465 THR A 540 REMARK 465 ARG A 541 REMARK 465 ASP A 542 REMARK 465 ARG A 543 REMARK 465 SER A 544 REMARK 465 LEU A 545 REMARK 465 SER A 546 REMARK 465 PRO A 547 REMARK 465 SER A 548 REMARK 465 GLY A 549 REMARK 465 GLU A 550 REMARK 465 ASP A 551 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 49 -124.31 58.68 REMARK 500 PHE A 92 6.18 81.53 REMARK 500 ASP A 112 -114.27 56.48 REMARK 500 HIS A 164 -87.37 -111.59 REMARK 500 LEU A 191 -32.11 -138.77 REMARK 500 SER A 220 -168.73 -76.88 REMARK 500 ASP A 332 124.63 -39.54 REMARK 500 GLU A 377 -65.90 -127.29 REMARK 500 GLN A 385 39.30 -152.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 203 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 JDJ A 601 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 394 SG REMARK 620 2 HEM A 602 NA 99.0 REMARK 620 3 HEM A 602 NB 87.7 88.5 REMARK 620 4 HEM A 602 NC 82.1 174.1 85.7 REMARK 620 5 HEM A 602 ND 92.7 93.7 177.7 92.1 REMARK 620 6 HOH A 701 O 171.0 85.7 84.8 92.5 94.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JDJ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEM A 602 DBREF 6MCW A 1 551 UNP Q603T8 Q603T8_METCA 1 551 SEQRES 1 A 551 MET SER HIS PRO PRO SER ASN THR PRO PRO VAL LYS PRO SEQRES 2 A 551 GLY GLY LEU PRO LEU LEU GLY HIS ILE LEU GLU PHE GLY SEQRES 3 A 551 LYS ASN PRO HIS ALA PHE LEU MET ALA LEU ARG HIS GLU SEQRES 4 A 551 PHE GLY ASP VAL ALA GLU PHE ARG MET PHE HIS GLN ARG SEQRES 5 A 551 MET VAL LEU LEU THR GLY SER GLN ALA SER GLU ALA PHE SEQRES 6 A 551 TYR ARG ALA PRO ASP GLU VAL LEU ASP GLN GLY PRO ALA SEQRES 7 A 551 TYR ARG ILE MET THR PRO ILE PHE GLY ARG GLY VAL VAL SEQRES 8 A 551 PHE ASP ALA ARG ILE GLU ARG LYS ASN GLN GLN LEU GLN SEQRES 9 A 551 MET LEU MET PRO ALA LEU ARG ASP LYS PRO MET ARG THR SEQRES 10 A 551 TYR SER GLU ILE ILE VAL ALA GLU VAL GLU ALA MET LEU SEQRES 11 A 551 ARG ASP TRP LYS ASP ALA GLY THR ILE ASP LEU LEU GLU SEQRES 12 A 551 LEU THR LYS GLU LEU THR ILE TYR THR SER SER HIS CYS SEQRES 13 A 551 LEU LEU GLY ALA GLU PHE ARG HIS GLU LEU ASN THR GLU SEQRES 14 A 551 PHE ALA GLY ILE TYR ARG ASP LEU GLU MET GLY ILE GLN SEQRES 15 A 551 PRO ILE ALA TYR VAL PHE PRO ASN LEU PRO LEU PRO VAL SEQRES 16 A 551 PHE LYS ARG ARG ASP GLN ALA ARG VAL ARG LEU GLN GLU SEQRES 17 A 551 LEU VAL THR GLN ILE MET GLU ARG ARG ALA ARG SER GLN SEQRES 18 A 551 GLU ARG SER THR ASN VAL PHE GLN MET LEU ILE ASP ALA SEQRES 19 A 551 SER TYR ASP ASP GLY SER LYS LEU THR PRO HIS GLU ILE SEQRES 20 A 551 THR GLY MET LEU ILE ALA THR ILE PHE ALA GLY HIS HIS SEQRES 21 A 551 THR SER SER GLY THR THR ALA TRP VAL LEU ILE GLU LEU SEQRES 22 A 551 LEU ARG ARG PRO GLU TYR LEU ARG ARG VAL ARG ALA GLU SEQRES 23 A 551 ILE ASP ALA LEU PHE GLU THR HIS GLY ARG VAL THR PHE SEQRES 24 A 551 GLU SER LEU ARG GLN MET PRO GLN LEU GLU ASN VAL ILE SEQRES 25 A 551 LYS GLU VAL LEU ARG LEU HIS PRO PRO LEU ILE LEU LEU SEQRES 26 A 551 MET ARG LYS VAL MET LYS ASP PHE GLU VAL GLN GLY MET SEQRES 27 A 551 ARG ILE GLU ALA GLY LYS PHE VAL CYS ALA ALA PRO SER SEQRES 28 A 551 VAL THR HIS ARG ILE PRO GLU LEU PHE PRO ASN PRO GLU SEQRES 29 A 551 LEU PHE ASP PRO ASP ARG TYR THR PRO GLU ARG ALA GLU SEQRES 30 A 551 ASP LYS ASP LEU TYR GLY TRP GLN ALA PHE GLY GLY GLY SEQRES 31 A 551 ARG HIS LYS CYS SER GLY ASN ALA PHE ALA MET PHE GLN SEQRES 32 A 551 ILE LYS ALA ILE VAL CYS VAL LEU LEU ARG ASN TYR GLU SEQRES 33 A 551 PHE GLU LEU ALA ALA ALA PRO GLU SER TYR ARG ASP ASP SEQRES 34 A 551 TYR ARG LYS MET VAL VAL GLU PRO ALA SER PRO CYS LEU SEQRES 35 A 551 ILE ARG TYR ARG ARG ARG ASP ALA PRO ALA ALA VAL ASP SEQRES 36 A 551 ALA LYS ALA SER ALA GLY GLU ALA PRO ALA GLU THR LEU SEQRES 37 A 551 ARG GLY ALA PHE ARG VAL THR VAL ASP ARG ASP LEU CYS SEQRES 38 A 551 LYS GLY HIS GLY ASN CYS MET ALA GLU ALA PRO GLU ILE SEQRES 39 A 551 PHE ARG VAL ASP GLU ASP GLY ARG LEU THR LEU LEU SER SEQRES 40 A 551 GLU THR PRO ASP PRO VAL LEU VAL GLY ALA ALA LEU ALA SEQRES 41 A 551 ALA GLU ARG PHE CYS PRO ALA ARG ALA ILE LYS ILE LEU SEQRES 42 A 551 PRO GLN ARG ASP PRO ALA THR ARG ASP ARG SER LEU SER SEQRES 43 A 551 PRO SER GLY GLU ASP HET JDJ A 601 36 HET HEM A 602 43 HETNAM JDJ 23-[4-(2,4,4-TRIMETHYLPENTAN-2-YL)PHENOXY]-3,6,9,12,15, HETNAM 2 JDJ 18,21-HEPTAOXATRICOSAN-1-OL HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN JDJ ANAPOE-X-114 HETSYN HEM HEME FORMUL 2 JDJ C30 H54 O9 FORMUL 3 HEM C34 H32 FE N4 O4 FORMUL 4 HOH *36(H2 O) HELIX 1 AA1 HIS A 21 ASN A 28 1 8 HELIX 2 AA2 ASN A 28 GLY A 41 1 14 HELIX 3 AA3 GLY A 58 ALA A 68 1 11 HELIX 4 AA4 GLN A 75 ARG A 80 5 6 HELIX 5 AA5 MET A 82 GLY A 87 1 6 HELIX 6 AA6 ARG A 95 MET A 107 1 13 HELIX 7 AA7 PRO A 108 LEU A 110 5 3 HELIX 8 AA8 PRO A 114 ARG A 131 1 18 HELIX 9 AA9 LEU A 141 LEU A 158 1 18 HELIX 10 AB1 GLY A 159 HIS A 164 1 6 HELIX 11 AB2 LEU A 166 GLY A 180 1 15 HELIX 12 AB3 GLN A 182 PHE A 188 1 7 HELIX 13 AB4 LEU A 193 SER A 220 1 28 HELIX 14 AB5 ASN A 226 ASP A 233 1 8 HELIX 15 AB6 THR A 243 ARG A 275 1 33 HELIX 16 AB7 ARG A 276 GLY A 295 1 20 HELIX 17 AB8 THR A 298 ARG A 303 1 6 HELIX 18 AB9 MET A 305 HIS A 319 1 15 HELIX 19 AC1 ALA A 349 HIS A 354 1 6 HELIX 20 AC2 ASP A 367 THR A 372 5 6 HELIX 21 AC3 GLY A 389 LYS A 393 5 5 HELIX 22 AC4 GLY A 396 ASN A 414 1 19 HELIX 23 AC5 ALA A 422 TYR A 426 5 5 SHEET 1 AA1 5 VAL A 43 PHE A 46 0 SHEET 2 AA1 5 MET A 53 LEU A 56 -1 O LEU A 55 N ALA A 44 SHEET 3 AA1 5 PHE A 345 ALA A 348 1 O CYS A 347 N LEU A 56 SHEET 4 AA1 5 LEU A 325 VAL A 329 -1 N ARG A 327 O VAL A 346 SHEET 5 AA1 5 LEU A 73 ASP A 74 -1 N ASP A 74 O LYS A 328 SHEET 1 AA2 3 ALA A 136 ASP A 140 0 SHEET 2 AA2 3 LEU A 442 ARG A 447 -1 O ILE A 443 N ILE A 139 SHEET 3 AA2 3 TYR A 415 LEU A 419 -1 N GLU A 416 O ARG A 446 SHEET 1 AA3 2 PHE A 333 VAL A 335 0 SHEET 2 AA3 2 MET A 338 ILE A 340 -1 O ILE A 340 N PHE A 333 SHEET 1 AA4 2 ASP A 428 ASP A 429 0 SHEET 2 AA4 2 GLU A 436 PRO A 437 -1 O GLU A 436 N ASP A 429 LINK SG CYS A 394 FE HEM A 602 1555 1555 2.33 LINK FE HEM A 602 O HOH A 701 1555 1555 2.38 SITE 1 AC1 11 TYR A 79 PHE A 92 GLU A 178 ILE A 181 SITE 2 AC1 11 GLN A 182 PHE A 256 ALA A 257 HIS A 260 SITE 3 AC1 11 VAL A 434 HEM A 602 HOH A 701 SITE 1 AC2 19 LEU A 103 ALA A 257 GLY A 258 THR A 261 SITE 2 AC2 19 PRO A 321 LEU A 322 ARG A 327 ALA A 386 SITE 3 AC2 19 PHE A 387 GLY A 388 HIS A 392 LYS A 393 SITE 4 AC2 19 CYS A 394 SER A 395 GLY A 396 ALA A 400 SITE 5 AC2 19 JDJ A 601 HOH A 701 HOH A 709 CRYST1 150.685 150.685 66.321 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006636 0.003832 0.000000 0.00000 SCALE2 0.000000 0.007663 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015078 0.00000