HEADER TRANSFERASE 04-SEP-18 6MDE TITLE MEVALONATE KINASE FROM METHANOSARCINA MAZEI WITH MEVALONATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: MVK; COMPND 5 EC: 2.7.1.36; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOSARCINA MAZEI; SOURCE 3 ORGANISM_TAXID: 2209; SOURCE 4 GENE: MVK, MM_1762; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.R.MILLER,Y.KUNG REVDAT 3 11-OCT-23 6MDE 1 LINK REVDAT 2 01-JAN-20 6MDE 1 REMARK REVDAT 1 19-DEC-18 6MDE 0 JRNL AUTH B.R.MILLER,Y.KUNG JRNL TITL STRUCTURAL INSIGHT INTO SUBSTRATE AND PRODUCT BINDING IN AN JRNL TITL 2 ARCHAEAL MEVALONATE KINASE. JRNL REF PLOS ONE V. 13 08419 2018 JRNL REFN ESSN 1932-6203 JRNL PMID 30521590 JRNL DOI 10.1371/JOURNAL.PONE.0208419 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.66 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 36504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 56.6826 - 4.9368 0.95 2756 142 0.1835 0.2062 REMARK 3 2 4.9368 - 3.9188 0.99 2720 143 0.1503 0.1951 REMARK 3 3 3.9188 - 3.4235 0.99 2699 145 0.1693 0.2309 REMARK 3 4 3.4235 - 3.1105 1.00 2685 135 0.1873 0.2489 REMARK 3 5 3.1105 - 2.8876 1.00 2686 144 0.1985 0.2723 REMARK 3 6 2.8876 - 2.7173 0.99 2644 138 0.2034 0.2536 REMARK 3 7 2.7173 - 2.5813 1.00 2658 134 0.2146 0.3035 REMARK 3 8 2.5813 - 2.4689 1.00 2671 130 0.2163 0.2697 REMARK 3 9 2.4689 - 2.3738 1.00 2647 137 0.2232 0.3167 REMARK 3 10 2.3738 - 2.2919 1.00 2613 158 0.2412 0.2747 REMARK 3 11 2.2919 - 2.2203 1.00 2665 144 0.2488 0.3269 REMARK 3 12 2.2203 - 2.1568 0.99 2612 132 0.2731 0.3139 REMARK 3 13 2.1568 - 2.1000 0.99 2628 138 0.2913 0.3536 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4534 REMARK 3 ANGLE : 0.883 6143 REMARK 3 CHIRALITY : 0.058 738 REMARK 3 PLANARITY : 0.005 789 REMARK 3 DIHEDRAL : 23.429 1622 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236708. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAR-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : CRYOGENICALLY-COOLED SINGLE REMARK 200 CRYSTAL SI(220) SIDE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 56.662 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11070 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4HAC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS, PH 5.5, 200-300 MM REMARK 280 SODIUM POTASSIUM TARTRATE, 15-25% PEG8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.02500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.55000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.55000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.02500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6600 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 57 CG CD OE1 OE2 REMARK 470 LYS A 121 CG CD CE NZ REMARK 470 LYS A 175 CG CD CE NZ REMARK 470 GLU A 279 CG CD OE1 OE2 REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 MET B 1 CG SD CE REMARK 470 ARG B 34 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 40 CG OD1 ND2 REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 SER B 42 OG REMARK 470 GLN B 48 CG CD OE1 NE2 REMARK 470 GLU B 57 CG CD OE1 OE2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 VAL B 65 CG1 CG2 REMARK 470 GLU B 67 CG CD OE1 OE2 REMARK 470 LYS B 71 CG CD CE NZ REMARK 470 ILE B 73 CG1 CG2 CD1 REMARK 470 ASN B 76 CG OD1 ND2 REMARK 470 ASP B 83 CG OD1 OD2 REMARK 470 GLU B 108 CG CD OE1 OE2 REMARK 470 LEU B 109 CG CD1 CD2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 PHE B 144 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 152 CG CD OE1 OE2 REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 GLU B 176 CG CD OE1 OE2 REMARK 470 ARG B 204 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 16 -38.57 74.12 REMARK 500 GLU A 30 45.63 -83.24 REMARK 500 VAL A 78 148.88 -172.74 REMARK 500 SER A 90 -156.66 -124.43 REMARK 500 HIS B 16 -29.71 74.38 REMARK 500 LEU B 54 107.01 -57.71 REMARK 500 ILE B 73 104.38 -164.76 REMARK 500 PHE B 110 -147.13 -97.39 REMARK 500 PHE B 112 -61.78 76.36 REMARK 500 ALA B 134 143.09 -175.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 702 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 749 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 402 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 691 O REMARK 620 2 HOH A 698 O 61.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 502 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PRO B 87 O REMARK 620 2 GLY B 89 O 88.9 REMARK 620 3 SER B 94 OG 97.7 154.7 REMARK 620 4 GOL B 504 O1 118.1 95.6 59.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MEV A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MEV B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 509 DBREF 6MDE A 1 301 UNP Q8PW39 Q8PW39_METMA 1 301 DBREF 6MDE B 1 301 UNP Q8PW39 Q8PW39_METMA 1 301 SEQADV 6MDE GLY A -1 UNP Q8PW39 EXPRESSION TAG SEQADV 6MDE HIS A 0 UNP Q8PW39 EXPRESSION TAG SEQADV 6MDE GLY B -1 UNP Q8PW39 EXPRESSION TAG SEQADV 6MDE HIS B 0 UNP Q8PW39 EXPRESSION TAG SEQRES 1 A 303 GLY HIS MET VAL SER CYS SER ALA PRO GLY LYS ILE TYR SEQRES 2 A 303 LEU PHE GLY GLU HIS ALA VAL VAL TYR GLY GLU THR ALA SEQRES 3 A 303 ILE ALA CYS ALA VAL GLU LEU ARG THR ARG VAL ARG ALA SEQRES 4 A 303 GLU LEU ASN ASP SER ILE THR ILE GLN SER GLN ILE GLY SEQRES 5 A 303 ARG THR GLY LEU ASP PHE GLU LYS HIS PRO TYR VAL SER SEQRES 6 A 303 ALA VAL ILE GLU LYS MET ARG LYS SER ILE PRO ILE ASN SEQRES 7 A 303 GLY VAL PHE LEU THR VAL ASP SER ASP ILE PRO VAL GLY SEQRES 8 A 303 SER GLY LEU GLY SER SER ALA ALA VAL THR ILE ALA SER SEQRES 9 A 303 ILE GLY ALA LEU ASN GLU LEU PHE GLY PHE GLY LEU SER SEQRES 10 A 303 LEU GLN GLU ILE ALA LYS LEU GLY HIS GLU ILE GLU ILE SEQRES 11 A 303 LYS VAL GLN GLY ALA ALA SER PRO THR ASP THR TYR VAL SEQRES 12 A 303 SER THR PHE GLY GLY VAL VAL THR ILE PRO GLU ARG ARG SEQRES 13 A 303 LYS LEU LYS THR PRO ASP CYS GLY ILE VAL ILE GLY ASP SEQRES 14 A 303 THR GLY VAL PHE SER SER THR LYS GLU LEU VAL ALA ASN SEQRES 15 A 303 VAL ARG GLN LEU ARG GLU SER TYR PRO ASP LEU ILE GLU SEQRES 16 A 303 PRO LEU MET THR SER ILE GLY LYS ILE SER ARG ILE GLY SEQRES 17 A 303 GLU GLN LEU VAL LEU SER GLY ASP TYR ALA SER ILE GLY SEQRES 18 A 303 ARG LEU MET ASN VAL ASN GLN GLY LEU LEU ASP ALA LEU SEQRES 19 A 303 GLY VAL ASN ILE LEU GLU LEU SER GLN LEU ILE TYR SER SEQRES 20 A 303 ALA ARG ALA ALA GLY ALA PHE GLY ALA LYS ILE THR GLY SEQRES 21 A 303 ALA GLY GLY GLY GLY CYS MET VAL ALA LEU THR ALA PRO SEQRES 22 A 303 GLU LYS CYS ASN GLN VAL ALA GLU ALA VAL ALA GLY ALA SEQRES 23 A 303 GLY GLY LYS VAL THR ILE THR LYS PRO THR GLU GLN GLY SEQRES 24 A 303 LEU LYS VAL ASP SEQRES 1 B 303 GLY HIS MET VAL SER CYS SER ALA PRO GLY LYS ILE TYR SEQRES 2 B 303 LEU PHE GLY GLU HIS ALA VAL VAL TYR GLY GLU THR ALA SEQRES 3 B 303 ILE ALA CYS ALA VAL GLU LEU ARG THR ARG VAL ARG ALA SEQRES 4 B 303 GLU LEU ASN ASP SER ILE THR ILE GLN SER GLN ILE GLY SEQRES 5 B 303 ARG THR GLY LEU ASP PHE GLU LYS HIS PRO TYR VAL SER SEQRES 6 B 303 ALA VAL ILE GLU LYS MET ARG LYS SER ILE PRO ILE ASN SEQRES 7 B 303 GLY VAL PHE LEU THR VAL ASP SER ASP ILE PRO VAL GLY SEQRES 8 B 303 SER GLY LEU GLY SER SER ALA ALA VAL THR ILE ALA SER SEQRES 9 B 303 ILE GLY ALA LEU ASN GLU LEU PHE GLY PHE GLY LEU SER SEQRES 10 B 303 LEU GLN GLU ILE ALA LYS LEU GLY HIS GLU ILE GLU ILE SEQRES 11 B 303 LYS VAL GLN GLY ALA ALA SER PRO THR ASP THR TYR VAL SEQRES 12 B 303 SER THR PHE GLY GLY VAL VAL THR ILE PRO GLU ARG ARG SEQRES 13 B 303 LYS LEU LYS THR PRO ASP CYS GLY ILE VAL ILE GLY ASP SEQRES 14 B 303 THR GLY VAL PHE SER SER THR LYS GLU LEU VAL ALA ASN SEQRES 15 B 303 VAL ARG GLN LEU ARG GLU SER TYR PRO ASP LEU ILE GLU SEQRES 16 B 303 PRO LEU MET THR SER ILE GLY LYS ILE SER ARG ILE GLY SEQRES 17 B 303 GLU GLN LEU VAL LEU SER GLY ASP TYR ALA SER ILE GLY SEQRES 18 B 303 ARG LEU MET ASN VAL ASN GLN GLY LEU LEU ASP ALA LEU SEQRES 19 B 303 GLY VAL ASN ILE LEU GLU LEU SER GLN LEU ILE TYR SER SEQRES 20 B 303 ALA ARG ALA ALA GLY ALA PHE GLY ALA LYS ILE THR GLY SEQRES 21 B 303 ALA GLY GLY GLY GLY CYS MET VAL ALA LEU THR ALA PRO SEQRES 22 B 303 GLU LYS CYS ASN GLN VAL ALA GLU ALA VAL ALA GLY ALA SEQRES 23 B 303 GLY GLY LYS VAL THR ILE THR LYS PRO THR GLU GLN GLY SEQRES 24 B 303 LEU LYS VAL ASP HET MEV A 401 10 HET K A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HET GOL A 409 6 HET MEV B 501 20 HET K B 502 1 HET GOL B 503 6 HET GOL B 504 6 HET GOL B 505 6 HET GOL B 506 6 HET GOL B 507 6 HET GOL B 508 6 HET GOL B 509 6 HETNAM MEV (R)-MEVALONATE HETNAM K POTASSIUM ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MEV 2(C6 H11 O4 1-) FORMUL 4 K 2(K 1+) FORMUL 5 GOL 14(C3 H8 O3) FORMUL 21 HOH *351(H2 O) HELIX 1 AA1 ALA A 17 GLY A 21 5 5 HELIX 2 AA2 HIS A 59 ARG A 70 1 12 HELIX 3 AA3 GLY A 93 GLY A 111 1 19 HELIX 4 AA4 SER A 115 GLY A 132 1 18 HELIX 5 AA5 PRO A 136 GLY A 145 1 10 HELIX 6 AA6 SER A 173 TYR A 188 1 16 HELIX 7 AA7 TYR A 188 GLY A 213 1 26 HELIX 8 AA8 ASP A 214 GLY A 233 1 20 HELIX 9 AA9 ILE A 236 ALA A 249 1 14 HELIX 10 AB1 ALA A 270 GLU A 272 5 3 HELIX 11 AB2 LYS A 273 ALA A 284 1 12 HELIX 12 AB3 ALA B 17 GLY B 21 5 5 HELIX 13 AB4 HIS B 59 LYS B 71 1 13 HELIX 14 AB5 GLY B 93 PHE B 110 1 18 HELIX 15 AB6 SER B 115 GLY B 132 1 18 HELIX 16 AB7 PRO B 136 GLY B 145 1 10 HELIX 17 AB8 SER B 173 TYR B 188 1 16 HELIX 18 AB9 TYR B 188 GLY B 213 1 26 HELIX 19 AC1 ASP B 214 LEU B 232 1 19 HELIX 20 AC2 ILE B 236 ALA B 249 1 14 HELIX 21 AC3 ALA B 270 GLU B 272 5 3 HELIX 22 AC4 LYS B 273 ALA B 284 1 12 SHEET 1 AA1 6 GLY A 50 THR A 52 0 SHEET 2 AA1 6 ILE A 43 SER A 47 -1 N ILE A 45 O THR A 52 SHEET 3 AA1 6 VAL A 78 SER A 84 1 O LEU A 80 N GLN A 46 SHEET 4 AA1 6 ALA A 24 LEU A 39 -1 N ARG A 34 O ASP A 83 SHEET 5 AA1 6 VAL A 147 ILE A 150 -1 O ILE A 150 N ALA A 24 SHEET 6 AA1 6 LYS A 155 LEU A 156 -1 O LEU A 156 N VAL A 147 SHEET 1 AA2 6 GLY A 50 THR A 52 0 SHEET 2 AA2 6 ILE A 43 SER A 47 -1 N ILE A 45 O THR A 52 SHEET 3 AA2 6 VAL A 78 SER A 84 1 O LEU A 80 N GLN A 46 SHEET 4 AA2 6 ALA A 24 LEU A 39 -1 N ARG A 34 O ASP A 83 SHEET 5 AA2 6 MET A 1 PHE A 13 -1 N CYS A 4 O VAL A 35 SHEET 6 AA2 6 LYS A 299 VAL A 300 -1 O LYS A 299 N SER A 5 SHEET 1 AA3 4 GLY A 253 ILE A 256 0 SHEET 2 AA3 4 CYS A 264 THR A 269 -1 O VAL A 266 N LYS A 255 SHEET 3 AA3 4 GLY A 162 ASP A 167 -1 N GLY A 162 O THR A 269 SHEET 4 AA3 4 LYS A 287 THR A 291 -1 O THR A 291 N ILE A 163 SHEET 1 AA4 6 GLY B 50 THR B 52 0 SHEET 2 AA4 6 THR B 44 SER B 47 -1 N ILE B 45 O THR B 52 SHEET 3 AA4 6 PHE B 79 SER B 84 1 O LEU B 80 N GLN B 46 SHEET 4 AA4 6 ALA B 24 GLU B 38 -1 N GLU B 38 O PHE B 79 SHEET 5 AA4 6 VAL B 147 ILE B 150 -1 O ILE B 150 N ALA B 24 SHEET 6 AA4 6 LYS B 155 LEU B 156 -1 O LEU B 156 N VAL B 147 SHEET 1 AA5 6 GLY B 50 THR B 52 0 SHEET 2 AA5 6 THR B 44 SER B 47 -1 N ILE B 45 O THR B 52 SHEET 3 AA5 6 PHE B 79 SER B 84 1 O LEU B 80 N GLN B 46 SHEET 4 AA5 6 ALA B 24 GLU B 38 -1 N GLU B 38 O PHE B 79 SHEET 5 AA5 6 VAL B 2 PHE B 13 -1 N GLY B 8 O LEU B 31 SHEET 6 AA5 6 LYS B 299 VAL B 300 -1 O LYS B 299 N SER B 5 SHEET 1 AA6 4 GLY B 253 ILE B 256 0 SHEET 2 AA6 4 CYS B 264 THR B 269 -1 O VAL B 266 N LYS B 255 SHEET 3 AA6 4 GLY B 162 ASP B 167 -1 N GLY B 162 O THR B 269 SHEET 4 AA6 4 LYS B 287 THR B 291 -1 O THR B 289 N ILE B 165 LINK K K A 402 O HOH A 691 1555 1555 3.30 LINK K K A 402 O HOH A 698 1555 1555 3.17 LINK O PRO B 87 K K B 502 1555 1555 2.90 LINK O GLY B 89 K K B 502 1555 1555 3.15 LINK OG SER B 94 K K B 502 1555 1555 2.94 LINK K K B 502 O1 GOL B 504 1555 1555 3.48 CISPEP 1 ILE A 150 PRO A 151 0 6.59 CISPEP 2 ILE B 150 PRO B 151 0 0.15 SITE 1 AC1 5 TYR A 11 HIS A 16 GLY A 258 HOH A 549 SITE 2 AC1 5 HOH A 581 SITE 1 AC2 4 HIS A 59 PRO A 60 TYR A 61 VAL A 62 SITE 1 AC3 3 ARG A 51 SER A 72 PHE A 112 SITE 1 AC4 4 TYR A 140 PHE A 144 GLY A 145 LYS A 155 SITE 1 AC5 5 SER A 3 ARG A 34 ARG A 36 ASP A 83 SITE 2 AC5 5 HOH A 591 SITE 1 AC6 4 LYS A 58 GLU A 108 LEU A 109 HOH A 528 SITE 1 AC7 6 LEU A 39 ASN A 40 GLN A 48 ASN A 76 SITE 2 AC7 6 GLY A 77 HOH A 523 SITE 1 AC8 9 GLY A 104 ASN A 107 GLU A 108 LEU A 114 SITE 2 AC8 9 LEU A 116 ILE A 119 LEU A 298 VAL A 300 SITE 3 AC8 9 HOH A 516 SITE 1 AC9 7 PRO A 87 GLY A 89 SER A 90 LEU A 92 SITE 2 AC9 7 GLY A 93 SER A 94 SER A 95 SITE 1 AD1 7 GLU B 15 HIS B 16 VAL B 19 GLY B 91 SITE 2 AD1 7 VAL B 178 HOH B 640 HOH B 643 SITE 1 AD2 6 PRO B 87 VAL B 88 GLY B 89 GLY B 93 SITE 2 AD2 6 SER B 94 GOL B 504 SITE 1 AD3 4 GLY B 213 ASP B 214 TYR B 215 ALA B 216 SITE 1 AD4 10 VAL B 88 GLY B 89 GLY B 91 LEU B 92 SITE 2 AD4 10 GLY B 93 SER B 94 SER B 95 K B 502 SITE 3 AD4 10 HOH B 653 HOH B 680 SITE 1 AD5 6 VAL B 88 ASP B 167 GLY B 169 VAL B 170 SITE 2 AD5 6 PHE B 171 GLY B 263 SITE 1 AD6 5 PHE B 56 LYS B 129 HOH B 611 HOH B 672 SITE 2 AD6 5 HOH B 697 SITE 1 AD7 2 HIS A 0 ASP B 160 SITE 1 AD8 7 SER B 90 SER B 172 THR B 174 ALA B 259 SITE 2 AD8 7 GLY B 260 HOH B 634 HOH B 680 SITE 1 AD9 3 GLU B 238 HOH B 646 HOH B 661 CRYST1 54.050 59.330 191.100 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018501 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016855 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005233 0.00000