HEADER DNA BINDING PROTEIN/DNA 05-SEP-18 6MDX TITLE MECHANISM OF PROTEASE DEPENDENT DPC REPAIR COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPRT-LIKE DOMAIN-CONTAINING PROTEIN SPARTAN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA DAMAGE PROTEIN TARGETING VCP,DVC1,PROTEIN WITH SPRT-LIKE COMPND 5 DOMAIN AT THE N TERMINUS,SPARTAN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(P*CP*C)-3'); COMPND 9 CHAIN: D; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SPRTN, C1ORF124, DVC1, UNQ1880/PRO4323; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS DPC REPAIR, PROTEASE, DNA BINDING PROTEIN, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.LI,J.RACZYNSKA,Z.CHEN,H.YU REVDAT 2 18-DEC-19 6MDX 1 REMARK REVDAT 1 10-APR-19 6MDX 0 JRNL AUTH F.LI,J.E.RACZYNSKA,Z.CHEN,H.YU JRNL TITL STRUCTURAL INSIGHT INTO DNA-DEPENDENT ACTIVATION OF HUMAN JRNL TITL 2 METALLOPROTEASE SPARTAN. JRNL REF CELL REP V. 26 3336 2019 JRNL REFN ESSN 2211-1247 JRNL PMID 30893605 JRNL DOI 10.1016/J.CELREP.2019.02.082 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 25729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1868 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1464 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.2400 REMARK 3 BIN FREE R VALUE SET COUNT : 110 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1527 REMARK 3 NUCLEIC ACID ATOMS : 39 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.97 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.088 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.764 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1958 ; 0.013 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1627 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2678 ; 1.660 ; 1.673 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3835 ; 1.054 ; 1.715 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ;24.976 ; 5.668 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 113 ;32.966 ;21.150 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 279 ;12.813 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;17.470 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 234 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2428 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 408 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 864 ; 4.039 ; 1.438 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 863 ; 4.041 ; 1.438 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 5.129 ; 2.144 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1083 ; 5.127 ; 2.145 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1094 ; 7.757 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1093 ; 7.758 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1583 ; 9.640 ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2119 ;10.289 ;25.649 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2120 ;10.290 ;25.644 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4 ; 8.944 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 17 ;20.139 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6MDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236734. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTOSOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE AT PH 5.5 AND 14% (W/V) PEG8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 64.16200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.75350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 64.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 14.75350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 446 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 549 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 550 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 85 REMARK 465 LYS A 86 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 585 O HOH A 585 2565 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 140 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 205 -67.68 -123.61 REMARK 500 CYS A 205 -59.55 -128.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 163 0.07 SIDE CHAIN REMARK 500 ARG A 185 0.12 SIDE CHAIN REMARK 500 ARG A 189 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 111 NE2 REMARK 620 2 HIS A 115 NE2 96.8 REMARK 620 3 HIS A 130 NE2 96.6 97.6 REMARK 620 4 FLC A 305 OHB 167.2 92.6 90.7 REMARK 620 5 FLC A 305 OB2 93.6 165.2 91.8 75.7 REMARK 620 6 FLC A 305 OA2 90.7 88.4 170.0 80.9 80.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 CYS A 173 SG 111.7 REMARK 620 3 HIS A 201 NE2 108.9 108.1 REMARK 620 4 CYS A 205 SG 109.2 111.2 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 169 SG REMARK 620 2 CYS A 173 SG 112.7 REMARK 620 3 HIS A 201 NE2 103.5 116.1 REMARK 620 4 CYS A 205 SG 112.8 112.0 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FLC A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-peptide MLZ A 184 and ARG A REMARK 800 185 DBREF 6MDX A 28 183 UNP Q9H040 SPRTN_HUMAN 28 214 DBREF 6MDX D 1 2 PDB 6MDX 6MDX 1 2 SEQRES 1 A 185 SER LEU SER LEU VAL ASP ALA SER TRP GLU LEU VAL ASP SEQRES 2 A 185 PRO THR PRO ASP LEU GLN ALA LEU PHE VAL GLN PHE ASN SEQRES 3 A 185 ASP GLN PHE PHE TRP GLY GLN LEU GLU ALA VAL GLU VAL SEQRES 4 A 185 LYS TRP SER VAL ARG MSE THR LEU CYS ALA GLY ILE CYS SEQRES 5 A 185 SER TYR GLU GLY LYS MSE CYS SER ILE ARG LEU SER GLU SEQRES 6 A 185 PRO LEU LEU LYS LEU ARG PRO ARG LYS ASP LEU VAL GLU SEQRES 7 A 185 THR LEU LEU HIS GLU MSE ILE HIS ALA TYR LEU PHE VAL SEQRES 8 A 185 THR ASN ASN ASP LYS ASP ARG GLU GLY HIS GLY PRO GLU SEQRES 9 A 185 PHE CYS LYS HIS MSE HIS ARG ILE ASN SER LEU THR GLY SEQRES 10 A 185 ALA ASN ILE THR VAL TYR HIS THR PHE HIS ASP GLU VAL SEQRES 11 A 185 ASP GLU TYR ARG ARG HIS TRP TRP ARG CYS ASN GLY PRO SEQRES 12 A 185 CYS GLN HIS ARG PRO PRO TYR TYR GLY TYR VAL MLZ ARG SEQRES 13 A 185 ALA THR ASN ARG GLU PRO SER ALA HIS ASP TYR TRP TRP SEQRES 14 A 185 ALA GLU HIS GLN LYS THR CYS GLY GLY THR TYR ILE LYS SEQRES 15 A 185 ILE LYS GLU SEQRES 1 D 2 DC DC MODRES 6MDX MSE A 72 MET MODIFIED RESIDUE HET MSE A 72 8 HET MSE A 87 8 HET MSE A 113 8 HET MSE A 138 8 HET MLZ A 184 10 HET EDO A 301 4 HET PGE A 302 10 HET ZN A 303 1 HET ZN A 304 2 HET FLC A 305 13 HETNAM MSE SELENOMETHIONINE HETNAM MLZ N-METHYL-LYSINE HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM ZN ZINC ION HETNAM FLC CITRATE ANION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 1 MLZ C7 H16 N2 O2 FORMUL 3 EDO C2 H6 O2 FORMUL 4 PGE C6 H14 O4 FORMUL 5 ZN 2(ZN 2+) FORMUL 7 FLC C6 H5 O7 3- FORMUL 8 HOH *213(H2 O) HELIX 1 AA1 ASP A 33 LEU A 38 5 6 HELIX 2 AA2 ASP A 44 PHE A 57 1 14 HELIX 3 AA3 GLU A 94 LYS A 98 1 5 HELIX 4 AA4 PRO A 101 THR A 121 1 21 HELIX 5 AA5 GLY A 131 GLY A 146 1 16 HELIX 6 AA6 HIS A 156 ARG A 163 1 8 HELIX 7 AA7 GLY A 171 ARG A 176 5 6 HELIX 8 AA8 TRP A 197 CYS A 205 1 9 SHEET 1 AA1 3 GLU A 65 SER A 69 0 SHEET 2 AA1 3 SER A 89 SER A 93 1 O ILE A 90 N GLU A 65 SHEET 3 AA1 3 GLY A 77 SER A 80 -1 N SER A 80 O SER A 89 SHEET 1 AA2 3 TYR A 182 ARG A 185 0 SHEET 2 AA2 3 HIS A 165 CYS A 169 -1 N HIS A 165 O ARG A 185 SHEET 3 AA2 3 TYR A 209 LYS A 213 -1 O ILE A 212 N TRP A 166 LINK C ARG A 71 N MSE A 72 1555 1555 1.35 LINK C MSE A 72 N THR A 73 1555 1555 1.34 LINK SG CYS A 75 CM MLZ A 184 1555 1555 1.86 LINK C MSE A 87 N CYS A 88 1555 1555 1.33 LINK NE2 HIS A 111 ZN ZN A 303 1555 1555 2.04 LINK C GLU A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N ILE A 114 1555 1555 1.35 LINK NE2 HIS A 115 ZN ZN A 303 1555 1555 2.07 LINK NE2 HIS A 130 ZN ZN A 303 1555 1555 2.06 LINK C HIS A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N HIS A 139 1555 1555 1.36 LINK SG ACYS A 169 ZN A ZN A 304 1555 1555 2.30 LINK SG BCYS A 169 ZN B ZN A 304 1555 1555 2.31 LINK SG ACYS A 173 ZN A ZN A 304 1555 1555 2.27 LINK SG BCYS A 173 ZN B ZN A 304 1555 1555 2.30 LINK C VAL A 183 N MLZ A 184 1555 1555 1.32 LINK C MLZ A 184 N ARG A 185 1555 1555 1.38 LINK NE2AHIS A 201 ZN A ZN A 304 1555 1555 2.00 LINK NE2BHIS A 201 ZN B ZN A 304 1555 1555 2.09 LINK SG ACYS A 205 ZN A ZN A 304 1555 1555 2.37 LINK SG BCYS A 205 ZN B ZN A 304 1555 1555 2.35 LINK ZN ZN A 303 OHB FLC A 305 1555 1555 2.17 LINK ZN ZN A 303 OB2 FLC A 305 1555 1555 2.09 LINK ZN ZN A 303 OA2 FLC A 305 1555 1555 2.10 LINK C2 C DC D 1 C5'C DC D 2 1555 2565 1.56 LINK C4 C DC D 1 C6 C DC D 2 1555 2565 1.42 LINK N4 C DC D 1 C6 C DC D 2 1555 2565 1.42 LINK C5 C DC D 1 C1'C DC D 2 1555 2565 1.30 LINK C5 C DC D 1 N1 C DC D 2 1555 2565 1.28 LINK C5 C DC D 1 C6 C DC D 2 1555 2565 1.49 LINK C6 C DC D 1 C2'C DC D 2 1555 2565 1.16 LINK C6 C DC D 1 C1'C DC D 2 1555 2565 1.58 CISPEP 1 PRO A 177 PRO A 178 0 -0.57 SITE 1 AC1 7 ARG A 168 TYR A 182 ILE A 212 FLC A 305 SITE 2 AC1 7 HOH A 403 HOH A 485 HOH A 535 SITE 1 AC2 3 THR A 73 LEU A 96 ARG A 163 SITE 1 AC3 4 HIS A 111 HIS A 115 HIS A 130 FLC A 305 SITE 1 AC4 4 CYS A 169 CYS A 173 HIS A 201 CYS A 205 SITE 1 AC5 16 GLY A 77 ILE A 78 HIS A 111 GLU A 112 SITE 2 AC5 16 HIS A 115 HIS A 130 HIS A 153 TRP A 166 SITE 3 AC5 16 TYR A 182 EDO A 301 ZN A 303 HOH A 417 SITE 4 AC5 16 HOH A 427 HOH A 436 HOH A 472 HOH A 535 SITE 1 AC6 22 LEU A 74 CYS A 75 ARG A 163 ARG A 164 SITE 2 AC6 22 HIS A 165 TRP A 166 VAL A 183 ALA A 186 SITE 3 AC6 22 THR A 187 ARG A 189 GLU A 190 PRO A 191 SITE 4 AC6 22 ASP A 195 TYR A 196 TRP A 197 HOH A 408 SITE 5 AC6 22 HOH A 518 HOH A 610 DC D 1 DC D 2 SITE 6 AC6 22 HOH D 101 HOH D 102 CRYST1 128.324 29.507 50.298 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.033890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019882 0.00000