HEADER HYDROLASE 06-SEP-18 6MEB TITLE CRYSTAL STRUCTURE OF TYLONYCTERIS BAT CORONAVIRUS HKU4 MACRODOMAIN IN TITLE 2 COMPLEX WITH NICOTINAMIDE ADENINE DINUCLEOTIDE (NAD+) COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICASE POLYPROTEIN 1AB; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: MACRODOMAIN (UNP RESIDUES 1154-1324); COMPND 5 SYNONYM: PP1AB, ORF1AB POLYPROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BAT CORONAVIRUS HKU4; SOURCE 3 ORGANISM_COMMON: BTCOV; SOURCE 4 ORGANISM_TAXID: 694007; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B-TEV KEYWDS CORONAVIRUS, MACRODOMAIN, ADP-RIBOSE, ADP-RIBOSYLHYDROLASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.G.HAMMOND,N.SCHORMANN,R.L.MCPHERSON,A.K.L.LEUNG,C.C.S.DEIVANAYAGAM, AUTHOR 2 M.A.JOHNSON REVDAT 4 11-OCT-23 6MEB 1 REMARK REVDAT 3 13-JAN-21 6MEB 1 JRNL REVDAT 2 01-JAN-20 6MEB 1 REMARK REVDAT 1 11-SEP-19 6MEB 0 JRNL AUTH R.G.HAMMOND,N.SCHORMANN,R.L.MCPHERSON,A.K.L.LEUNG, JRNL AUTH 2 C.DEIVANAYAGAM,M.A.JOHNSON JRNL TITL ADP-RIBOSE AND ANALOGUES BOUND TO THE DEMARYLATING JRNL TITL 2 MACRODOMAIN FROM THE BAT CORONAVIRUS HKU4 JRNL REF PROC.NATL.ACAD.SCI.USA 2021 JRNL REFN ESSN 1091-6490 JRNL DOI 10.1073/PNAS.2004500118 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0230 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 26782 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1461 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1670 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 95 REMARK 3 BIN FREE R VALUE : 0.2330 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2417 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 366 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.09000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.094 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.897 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2562 ; 0.008 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 2331 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3509 ; 1.365 ; 1.642 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5436 ; 0.917 ; 1.664 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 6.583 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;37.038 ;24.766 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 400 ;14.164 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;14.894 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 359 ; 0.238 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3016 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 436 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 310 468 B 310 468 4938 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 308 A 328 REMARK 3 RESIDUE RANGE : A 329 A 332 REMARK 3 RESIDUE RANGE : A 333 A 350 REMARK 3 RESIDUE RANGE : A 351 A 375 REMARK 3 RESIDUE RANGE : A 376 A 408 REMARK 3 RESIDUE RANGE : A 409 A 438 REMARK 3 RESIDUE RANGE : A 439 A 460 REMARK 3 RESIDUE RANGE : A 461 A 469 REMARK 3 ORIGIN FOR THE GROUP (A): 34.9004 17.5125 56.7916 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.0338 REMARK 3 T33: 0.0417 T12: 0.0284 REMARK 3 T13: -0.0082 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.4226 L22: 1.1626 REMARK 3 L33: 0.7875 L12: 0.0471 REMARK 3 L13: -0.4178 L23: -0.1437 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: -0.0038 S13: 0.0009 REMARK 3 S21: -0.0321 S22: 0.0216 S23: 0.0885 REMARK 3 S31: 0.0578 S32: 0.0669 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 8 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 310 B 318 REMARK 3 RESIDUE RANGE : B 319 B 332 REMARK 3 RESIDUE RANGE : B 333 B 350 REMARK 3 RESIDUE RANGE : B 351 B 375 REMARK 3 RESIDUE RANGE : B 376 B 408 REMARK 3 RESIDUE RANGE : B 409 B 438 REMARK 3 RESIDUE RANGE : B 439 B 460 REMARK 3 RESIDUE RANGE : B 461 B 469 REMARK 3 ORIGIN FOR THE GROUP (A): 33.3679 24.8697 26.0454 REMARK 3 T TENSOR REMARK 3 T11: 0.0869 T22: 0.0513 REMARK 3 T33: 0.0206 T12: 0.0416 REMARK 3 T13: 0.0165 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.6279 L22: 0.3313 REMARK 3 L33: 1.9140 L12: -0.1218 REMARK 3 L13: 0.8158 L23: 0.3179 REMARK 3 S TENSOR REMARK 3 S11: -0.0488 S12: 0.0632 S13: -0.0877 REMARK 3 S21: 0.0288 S22: 0.0811 S23: 0.0666 REMARK 3 S31: -0.1485 S32: 0.1571 S33: -0.0323 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6MEB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.DEV.877 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.32 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28245 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 33.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.08800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.40 REMARK 200 R MERGE FOR SHELL (I) : 0.16600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.2 REMARK 200 STARTING MODEL: PDB ENTRY 6MEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-25% PEG3350, 0.1 M HEPES, PH 7.0 REMARK 280 -7.5, PROTEIN:LIGAND MOLAR RATIO 1:10, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 305 REMARK 465 HIS A 306 REMARK 465 MET A 307 REMARK 465 PRO A 470 REMARK 465 SER A 471 REMARK 465 LYS A 472 REMARK 465 PRO A 473 REMARK 465 ASP A 474 REMARK 465 GLY A 475 REMARK 465 LEU A 476 REMARK 465 VAL A 477 REMARK 465 TYR A 478 REMARK 465 SER B 305 REMARK 465 HIS B 306 REMARK 465 MET B 307 REMARK 465 SER B 308 REMARK 465 LYS B 309 REMARK 465 PRO B 470 REMARK 465 SER B 471 REMARK 465 LYS B 472 REMARK 465 PRO B 473 REMARK 465 ASP B 474 REMARK 465 GLY B 475 REMARK 465 LEU B 476 REMARK 465 VAL B 477 REMARK 465 TYR B 478 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 309 -24.17 105.04 REMARK 500 HIS B 348 59.99 -99.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 778 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH B 779 DISTANCE = 6.69 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6MEA RELATED DB: PDB REMARK 900 RELATED ID: 6MEN RELATED DB: PDB DBREF 6MEB A 308 478 UNP P0C6W3 R1AB_BCHK4 1154 1324 DBREF 6MEB B 308 478 UNP P0C6W3 R1AB_BCHK4 1154 1324 SEQADV 6MEB SER A 305 UNP P0C6W3 EXPRESSION TAG SEQADV 6MEB HIS A 306 UNP P0C6W3 EXPRESSION TAG SEQADV 6MEB MET A 307 UNP P0C6W3 EXPRESSION TAG SEQADV 6MEB SER B 305 UNP P0C6W3 EXPRESSION TAG SEQADV 6MEB HIS B 306 UNP P0C6W3 EXPRESSION TAG SEQADV 6MEB MET B 307 UNP P0C6W3 EXPRESSION TAG SEQRES 1 A 174 SER HIS MET SER LYS TYR LYS HIS THR VAL ILE ASN ASN SEQRES 2 A 174 SER VAL THR LEU VAL LEU GLY ASP ALA ILE GLN ILE ALA SEQRES 3 A 174 SER LEU LEU PRO LYS CYS ILE LEU VAL ASN ALA ALA ASN SEQRES 4 A 174 ARG HIS LEU LYS HIS GLY GLY GLY ILE ALA GLY VAL ILE SEQRES 5 A 174 ASN LYS ALA SER GLY GLY ASP VAL GLN GLU GLU SER ASP SEQRES 6 A 174 GLU TYR ILE SER ASN ASN GLY PRO LEU HIS VAL GLY ASP SEQRES 7 A 174 SER VAL LEU LEU LYS GLY HIS GLY LEU ALA ASP ALA ILE SEQRES 8 A 174 LEU HIS VAL VAL GLY PRO ASP ALA ARG ASN ASN GLU ASP SEQRES 9 A 174 ALA ALA LEU LEU LYS ARG CYS TYR LYS ALA PHE ASN LYS SEQRES 10 A 174 HIS THR ILE VAL VAL THR PRO LEU ILE SER ALA GLY ILE SEQRES 11 A 174 PHE SER VAL ASP PRO LYS VAL SER PHE GLU TYR LEU LEU SEQRES 12 A 174 ALA ASN VAL THR THR THR THR TYR VAL VAL VAL ASN ASN SEQRES 13 A 174 GLU ASP ILE TYR ASN THR LEU ALA THR PRO SER LYS PRO SEQRES 14 A 174 ASP GLY LEU VAL TYR SEQRES 1 B 174 SER HIS MET SER LYS TYR LYS HIS THR VAL ILE ASN ASN SEQRES 2 B 174 SER VAL THR LEU VAL LEU GLY ASP ALA ILE GLN ILE ALA SEQRES 3 B 174 SER LEU LEU PRO LYS CYS ILE LEU VAL ASN ALA ALA ASN SEQRES 4 B 174 ARG HIS LEU LYS HIS GLY GLY GLY ILE ALA GLY VAL ILE SEQRES 5 B 174 ASN LYS ALA SER GLY GLY ASP VAL GLN GLU GLU SER ASP SEQRES 6 B 174 GLU TYR ILE SER ASN ASN GLY PRO LEU HIS VAL GLY ASP SEQRES 7 B 174 SER VAL LEU LEU LYS GLY HIS GLY LEU ALA ASP ALA ILE SEQRES 8 B 174 LEU HIS VAL VAL GLY PRO ASP ALA ARG ASN ASN GLU ASP SEQRES 9 B 174 ALA ALA LEU LEU LYS ARG CYS TYR LYS ALA PHE ASN LYS SEQRES 10 B 174 HIS THR ILE VAL VAL THR PRO LEU ILE SER ALA GLY ILE SEQRES 11 B 174 PHE SER VAL ASP PRO LYS VAL SER PHE GLU TYR LEU LEU SEQRES 12 B 174 ALA ASN VAL THR THR THR THR TYR VAL VAL VAL ASN ASN SEQRES 13 B 174 GLU ASP ILE TYR ASN THR LEU ALA THR PRO SER LYS PRO SEQRES 14 B 174 ASP GLY LEU VAL TYR HET NAD A 500 44 HET NAD B 500 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NAD 2(C21 H27 N7 O14 P2) FORMUL 5 HOH *366(H2 O) HELIX 1 AA1 ASP A 325 LEU A 333 1 9 HELIX 2 AA2 GLY A 350 SER A 360 1 11 HELIX 3 AA3 GLY A 362 GLY A 376 1 15 HELIX 4 AA4 ASP A 402 ASN A 406 5 5 HELIX 5 AA5 ASP A 408 ALA A 410 5 3 HELIX 6 AA6 LEU A 411 ALA A 418 1 8 HELIX 7 AA7 ASP A 438 VAL A 450 1 13 HELIX 8 AA8 ASN A 460 THR A 469 1 10 HELIX 9 AA9 ASP B 325 LEU B 333 1 9 HELIX 10 AB1 GLY B 350 SER B 360 1 11 HELIX 11 AB2 GLY B 362 GLY B 376 1 15 HELIX 12 AB3 ASP B 402 ASN B 406 5 5 HELIX 13 AB4 ASP B 408 ALA B 410 5 3 HELIX 14 AB5 LEU B 411 ALA B 418 1 8 HELIX 15 AB6 ASP B 438 VAL B 450 1 13 HELIX 16 AB7 ASN B 460 THR B 469 1 10 SHEET 1 AA1 7 HIS A 312 VAL A 314 0 SHEET 2 AA1 7 VAL A 319 LEU A 323 -1 O LEU A 321 N THR A 313 SHEET 3 AA1 7 THR A 453 VAL A 458 1 O VAL A 456 N VAL A 322 SHEET 4 AA1 7 ILE A 424 THR A 427 1 N THR A 427 O VAL A 457 SHEET 5 AA1 7 ILE A 337 ALA A 342 1 N VAL A 339 O VAL A 426 SHEET 6 AA1 7 ALA A 394 VAL A 399 1 O VAL A 398 N ASN A 340 SHEET 7 AA1 7 SER A 383 LYS A 387 -1 N LEU A 386 O ILE A 395 SHEET 1 AA2 7 HIS B 312 VAL B 314 0 SHEET 2 AA2 7 VAL B 319 LEU B 323 -1 O LEU B 321 N THR B 313 SHEET 3 AA2 7 THR B 453 VAL B 458 1 O VAL B 456 N VAL B 322 SHEET 4 AA2 7 ILE B 424 THR B 427 1 N THR B 427 O VAL B 457 SHEET 5 AA2 7 ILE B 337 ALA B 342 1 N ILE B 337 O VAL B 426 SHEET 6 AA2 7 ALA B 394 VAL B 399 1 O VAL B 398 N ASN B 340 SHEET 7 AA2 7 SER B 383 LYS B 387 -1 N LEU B 386 O ILE B 395 SITE 1 AC1 25 ASP A 325 ALA A 326 ALA A 341 ASN A 343 SITE 2 AC1 25 LYS A 347 GLY A 350 GLY A 351 ILE A 352 SITE 3 AC1 25 PRO A 428 LEU A 429 SER A 431 ALA A 432 SITE 4 AC1 25 GLY A 433 ILE A 434 PHE A 435 VAL A 457 SITE 5 AC1 25 ASN A 459 HOH A 602 HOH A 606 HOH A 631 SITE 6 AC1 25 HOH A 635 HOH A 672 HOH A 683 HOH A 701 SITE 7 AC1 25 HOH A 721 SITE 1 AC2 29 ASN A 317 ASN A 374 THR A 453 ASP B 325 SITE 2 AC2 29 ALA B 326 ALA B 341 ALA B 342 ASN B 343 SITE 3 AC2 29 LYS B 347 GLY B 350 GLY B 351 ILE B 352 SITE 4 AC2 29 PRO B 428 LEU B 429 SER B 431 ALA B 432 SITE 5 AC2 29 GLY B 433 ILE B 434 PHE B 435 VAL B 457 SITE 6 AC2 29 ASN B 459 HOH B 601 HOH B 602 HOH B 643 SITE 7 AC2 29 HOH B 652 HOH B 658 HOH B 696 HOH B 698 SITE 8 AC2 29 HOH B 710 CRYST1 33.607 41.561 59.912 73.42 88.56 88.43 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.029756 -0.000818 -0.000540 0.00000 SCALE2 0.000000 0.024070 -0.007152 0.00000 SCALE3 0.000000 0.000000 0.017418 0.00000