HEADER IMMUNE SYSTEM 06-SEP-18 6MEG TITLE CRYSTAL STRUCTURE OF HUMAN MONOCLONAL ANTIBODY HEPC46 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY HEPC46 HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY HEPC46 LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTT5; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PTT5 KEYWDS HCV GLYCOPROTEIN, BROADLY NEUTRALIZING ANTIBODIES, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.I.FLYAK,P.J.BJORKMAN REVDAT 5 11-OCT-23 6MEG 1 REMARK REVDAT 4 18-DEC-19 6MEG 1 REMARK REVDAT 3 06-NOV-19 6MEG 1 TITLE REVDAT 2 28-NOV-18 6MEG 1 JRNL REVDAT 1 21-NOV-18 6MEG 0 JRNL AUTH A.I.FLYAK,S.RUIZ,M.D.COLBERT,T.LUONG,J.E.CROWE JR., JRNL AUTH 2 J.R.BAILEY,P.J.BJORKMAN JRNL TITL HCV BROADLY NEUTRALIZING ANTIBODIES USE A CDRH3 DISULFIDE JRNL TITL 2 MOTIF TO RECOGNIZE AN E2 GLYCOPROTEIN SITE THAT CAN BE JRNL TITL 3 TARGETED FOR VACCINE DESIGN. JRNL REF CELL HOST MICROBE V. 24 703 2018 JRNL REFN ESSN 1934-6069 JRNL PMID 30439340 JRNL DOI 10.1016/J.CHOM.2018.10.009 REMARK 2 REMARK 2 RESOLUTION. 1.41 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.41 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 81610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4072 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.8820 - 4.3291 0.97 2841 152 0.1494 0.1829 REMARK 3 2 4.3291 - 3.4372 1.00 2763 148 0.1450 0.1475 REMARK 3 3 3.4372 - 3.0030 0.98 2723 137 0.1601 0.1914 REMARK 3 4 3.0030 - 2.7286 0.99 2713 133 0.1610 0.2058 REMARK 3 5 2.7286 - 2.5331 0.99 2719 136 0.1634 0.1648 REMARK 3 6 2.5331 - 2.3838 0.98 2659 135 0.1650 0.1716 REMARK 3 7 2.3838 - 2.2644 0.98 2638 153 0.1643 0.1999 REMARK 3 8 2.2644 - 2.1658 0.99 2691 135 0.1650 0.1974 REMARK 3 9 2.1658 - 2.0825 1.00 2695 149 0.1730 0.1922 REMARK 3 10 2.0825 - 2.0106 1.00 2681 140 0.1691 0.2089 REMARK 3 11 2.0106 - 1.9478 1.00 2666 159 0.1767 0.2107 REMARK 3 12 1.9478 - 1.8921 1.00 2684 146 0.1790 0.1981 REMARK 3 13 1.8921 - 1.8423 0.96 2595 135 0.1860 0.2152 REMARK 3 14 1.8423 - 1.7973 0.99 2671 137 0.1939 0.2458 REMARK 3 15 1.7973 - 1.7565 1.00 2656 135 0.1986 0.2379 REMARK 3 16 1.7565 - 1.7191 1.00 2681 136 0.2001 0.2340 REMARK 3 17 1.7191 - 1.6847 1.00 2703 138 0.1996 0.2298 REMARK 3 18 1.6847 - 1.6529 1.00 2628 150 0.2104 0.2461 REMARK 3 19 1.6529 - 1.6234 1.00 2667 148 0.2136 0.2630 REMARK 3 20 1.6234 - 1.5959 1.00 2688 138 0.2161 0.2482 REMARK 3 21 1.5959 - 1.5702 0.97 2591 136 0.2201 0.2553 REMARK 3 22 1.5702 - 1.5460 0.97 2579 134 0.2279 0.2367 REMARK 3 23 1.5460 - 1.5233 0.99 2621 152 0.2398 0.2345 REMARK 3 24 1.5233 - 1.5018 1.00 2680 140 0.2433 0.3077 REMARK 3 25 1.5018 - 1.4815 1.00 2633 126 0.2479 0.2596 REMARK 3 26 1.4815 - 1.4623 1.00 2702 126 0.2710 0.2717 REMARK 3 27 1.4623 - 1.4440 1.00 2660 142 0.2778 0.3270 REMARK 3 28 1.4440 - 1.4266 1.00 2651 127 0.2812 0.3182 REMARK 3 29 1.4266 - 1.4100 1.00 2659 149 0.2853 0.2899 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3309 REMARK 3 ANGLE : 1.041 4521 REMARK 3 CHIRALITY : 0.088 509 REMARK 3 PLANARITY : 0.008 578 REMARK 3 DIHEDRAL : 13.502 1177 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.195 37.114 113.611 REMARK 3 T TENSOR REMARK 3 T11: 0.2666 T22: 0.1325 REMARK 3 T33: 0.2993 T12: 0.0864 REMARK 3 T13: 0.2051 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.4821 L22: 0.2311 REMARK 3 L33: 0.5502 L12: 0.0622 REMARK 3 L13: -0.2425 L23: -0.0777 REMARK 3 S TENSOR REMARK 3 S11: 0.2783 S12: -0.0256 S13: 0.4029 REMARK 3 S21: -0.0575 S22: 0.0701 S23: -0.0200 REMARK 3 S31: -0.3099 S32: -0.1784 S33: -0.0357 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN H AND RESID 119:214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.432 25.186 83.954 REMARK 3 T TENSOR REMARK 3 T11: 0.1294 T22: 0.1444 REMARK 3 T33: 0.1114 T12: -0.0016 REMARK 3 T13: 0.0021 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.6826 L22: 1.4735 REMARK 3 L33: 1.2176 L12: -0.0432 REMARK 3 L13: -0.1472 L23: -0.1712 REMARK 3 S TENSOR REMARK 3 S11: -0.0839 S12: 0.0759 S13: -0.1725 REMARK 3 S21: -0.0442 S22: -0.0368 S23: -0.0049 REMARK 3 S31: -0.0782 S32: 0.1653 S33: 0.1149 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.320 16.121 119.076 REMARK 3 T TENSOR REMARK 3 T11: 0.0848 T22: 0.1090 REMARK 3 T33: 0.1161 T12: -0.0010 REMARK 3 T13: -0.0156 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 1.0269 L22: 1.0179 REMARK 3 L33: 1.8228 L12: -0.2556 REMARK 3 L13: 0.0616 L23: 0.1716 REMARK 3 S TENSOR REMARK 3 S11: 0.1055 S12: -0.0616 S13: -0.1168 REMARK 3 S21: -0.0460 S22: 0.0662 S23: 0.0191 REMARK 3 S31: 0.0157 S32: -0.0005 S33: -0.1511 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 112:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.988 13.307 81.715 REMARK 3 T TENSOR REMARK 3 T11: 0.1583 T22: 0.1403 REMARK 3 T33: 0.1223 T12: 0.0085 REMARK 3 T13: 0.0076 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.8031 L22: 1.5718 REMARK 3 L33: 1.2215 L12: -0.0722 REMARK 3 L13: 0.2017 L23: -0.4643 REMARK 3 S TENSOR REMARK 3 S11: 0.1001 S12: 0.0274 S13: 0.0102 REMARK 3 S21: -0.1849 S22: -0.1056 S23: -0.1348 REMARK 3 S31: 0.1385 S32: -0.0133 S33: 0.0096 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MEG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236646. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81686 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.410 REMARK 200 RESOLUTION RANGE LOW (A) : 48.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.41 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.89300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3P30 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.0, 30% PEG 2,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.32000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.29500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.65100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.29500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.65100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 THR H 219 REMARK 465 HIS H 220 REMARK 465 HIS H 221 REMARK 465 HIS H 222 REMARK 465 HIS H 223 REMARK 465 HIS H 224 REMARK 465 HIS H 225 REMARK 465 THR L 210 REMARK 465 GLU L 211 REMARK 465 CYS L 212 REMARK 465 SER L 213 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS H 214 O HOH H 302 1.35 REMARK 500 H SER H 172 O HOH H 307 1.40 REMARK 500 H GLY L 108 O HOH L 302 1.42 REMARK 500 O GLY H 190 HG1 THR H 191 1.55 REMARK 500 O HOH H 428 O HOH H 520 1.85 REMARK 500 OG SER L 188 O HOH L 301 1.86 REMARK 500 O HOH H 400 O HOH L 359 1.86 REMARK 500 O HOH L 458 O HOH L 463 1.87 REMARK 500 O HOH L 385 O HOH L 543 1.87 REMARK 500 O HOH H 406 O HOH H 429 1.90 REMARK 500 N GLY L 108 O HOH L 302 1.92 REMARK 500 OE1 GLN H 61 O HOH H 301 1.93 REMARK 500 O HOH H 517 O HOH H 570 1.94 REMARK 500 SD MET H 69 O HOH H 536 1.96 REMARK 500 NZ LYS H 214 O HOH H 302 2.00 REMARK 500 O HOH L 302 O HOH L 538 2.02 REMARK 500 O THR H 191 O HOH H 303 2.03 REMARK 500 O HOH L 307 O HOH L 400 2.05 REMARK 500 O HOH H 545 O HOH H 580 2.06 REMARK 500 O HOH H 338 O HOH H 500 2.06 REMARK 500 O HOH H 334 O HOH H 512 2.07 REMARK 500 O HOH L 342 O HOH L 362 2.08 REMARK 500 O HOH L 499 O HOH L 575 2.10 REMARK 500 O HOH H 394 O HOH H 496 2.11 REMARK 500 O HOH L 536 O HOH L 578 2.11 REMARK 500 O HOH L 520 O HOH L 571 2.11 REMARK 500 OE1 GLU H 46 O HOH H 304 2.11 REMARK 500 NE2 GLN H 97 O HOH H 305 2.12 REMARK 500 O HOH H 446 O HOH H 476 2.12 REMARK 500 O GLY L 57 O HOH L 303 2.12 REMARK 500 OD2 ASP L 93 O HOH L 304 2.13 REMARK 500 O HOH H 394 O HOH L 359 2.14 REMARK 500 O HOH L 527 O HOH L 566 2.15 REMARK 500 NZ LYS H 117 O HOH H 306 2.15 REMARK 500 N SER H 172 O HOH H 307 2.18 REMARK 500 O HOH H 480 O HOH H 572 2.19 REMARK 500 O HOH H 322 O HOH H 463 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 319 O HOH L 303 4557 1.89 REMARK 500 O HOH L 320 O HOH L 344 4457 1.98 REMARK 500 O HOH L 466 O HOH L 529 4457 2.16 REMARK 500 O HOH H 358 O HOH L 522 4457 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS H 140 CA - CB - SG ANGL. DEV. = 9.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN H 43 -169.25 -109.95 REMARK 500 ASP H 101 -61.58 -97.43 REMARK 500 ASP H 144 60.85 61.78 REMARK 500 THR H 160 -35.26 -131.21 REMARK 500 THR H 191 -5.38 77.04 REMARK 500 ASN L 27B -95.19 -116.37 REMARK 500 ASN L 51 -49.05 76.80 REMARK 500 ASN L 52 11.78 -147.43 REMARK 500 ASP L 152 -113.91 51.22 REMARK 500 ASN L 171 -5.66 80.49 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MEG H 1 225 PDB 6MEG 6MEG 1 225 DBREF 6MEG L 1 213 PDB 6MEG 6MEG 1 213 SEQRES 1 H 230 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 230 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 230 TYR ILE PHE THR SER HIS GLY ILE SER TRP VAL ARG GLN SEQRES 4 H 230 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE SER SEQRES 5 H 230 VAL TYR ASN GLY TYR THR ASN TYR ALA GLN ASN LEU GLN SEQRES 6 H 230 GLY ARG VAL THR MET THR THR ASP THR SER THR SER THR SEQRES 7 H 230 ALA TYR MET GLU LEU ARG SER LEU ARG SER ASP ASP THR SEQRES 8 H 230 ALA VAL TYR PHE CYS ALA ARG ALA SER GLN ILE ARG GLY SEQRES 9 H 230 VAL ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SER SEQRES 10 H 230 SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA SEQRES 11 H 230 PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA LEU SEQRES 12 H 230 GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 230 VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL HIS SEQRES 14 H 230 THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER SEQRES 15 H 230 LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY SEQRES 16 H 230 THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SER SEQRES 17 H 230 ASN THR LYS VAL ASP LYS ARG VAL GLU PRO LYS SER CYS SEQRES 18 H 230 ASP LYS THR HIS HIS HIS HIS HIS HIS SEQRES 1 L 217 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 217 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 217 SER ASN ILE GLY SER ASN TYR VAL TYR TRP TYR GLN GLN SEQRES 4 L 217 PHE PRO GLY THR ALA PRO LYS LEU LEU ILE TYR GLY ASN SEQRES 5 L 217 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 217 LEU ARG SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 217 TRP ASP ASP SER LEU SER GLY PRO TRP VAL PHE GLY GLY SEQRES 9 L 217 GLY THR GLN VAL THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER FORMUL 3 HOH *597(H2 O) HELIX 1 AA1 ILE H 28 HIS H 32 5 5 HELIX 2 AA2 GLN H 61 GLN H 64 5 4 HELIX 3 AA3 ARG H 83 THR H 87 5 5 HELIX 4 AA4 SER H 127 LYS H 129 5 3 HELIX 5 AA5 SER H 156 ALA H 158 5 3 HELIX 6 AA6 SER H 187 GLY H 190 5 4 HELIX 7 AA7 LYS H 201 ASN H 204 5 4 HELIX 8 AA8 ARG L 79 GLU L 83 5 5 HELIX 9 AA9 SER L 122 ALA L 128 1 7 HELIX 10 AB1 THR L 182 HIS L 189 1 8 SHEET 1 AA1 4 GLN H 3 GLN H 6 0 SHEET 2 AA1 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA1 4 THR H 77 LEU H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N THR H 70 O TYR H 79 SHEET 1 AA2 6 GLU H 10 LYS H 12 0 SHEET 2 AA2 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA2 6 ALA H 88 SER H 96 -1 N TYR H 90 O THR H 107 SHEET 4 AA2 6 GLY H 33 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA2 6 GLU H 46 ILE H 51 -1 O GLU H 46 N ARG H 38 SHEET 6 AA2 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA3 4 GLU H 10 LYS H 12 0 SHEET 2 AA3 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 4 ALA H 88 SER H 96 -1 N TYR H 90 O THR H 107 SHEET 4 AA3 4 GLY H 100 TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O LYS H 143 N SER H 120 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 THR H 131 SER H 132 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O THR H 135 N SER H 132 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 ILE H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA7 5 SER L 9 GLY L 13 0 SHEET 2 AA7 5 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 AA7 5 ALA L 84 TRP L 91 -1 N ALA L 84 O VAL L 104 SHEET 4 AA7 5 VAL L 33 GLN L 38 -1 N GLN L 38 O ASP L 85 SHEET 5 AA7 5 LYS L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AA8 4 SER L 9 GLY L 13 0 SHEET 2 AA8 4 THR L 102 VAL L 106 1 O THR L 105 N ALA L 11 SHEET 3 AA8 4 ALA L 84 TRP L 91 -1 N ALA L 84 O VAL L 104 SHEET 4 AA8 4 TRP L 96 PHE L 98 -1 O VAL L 97 N ALA L 90 SHEET 1 AA9 3 VAL L 19 SER L 24 0 SHEET 2 AA9 3 SER L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 3 AA9 3 PHE L 62 SER L 67 -1 N SER L 63 O ALA L 74 SHEET 1 AB1 4 SER L 115 PHE L 119 0 SHEET 2 AB1 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB1 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AB1 4 VAL L 160 THR L 162 -1 N GLU L 161 O TYR L 178 SHEET 1 AB2 4 SER L 115 PHE L 119 0 SHEET 2 AB2 4 ALA L 131 PHE L 140 -1 O LEU L 136 N THR L 117 SHEET 3 AB2 4 TYR L 173 LEU L 181 -1 O SER L 177 N CYS L 135 SHEET 4 AB2 4 SER L 166 LYS L 167 -1 N SER L 166 O ALA L 174 SHEET 1 AB3 4 SER L 154 VAL L 156 0 SHEET 2 AB3 4 THR L 146 ALA L 151 -1 N ALA L 151 O SER L 154 SHEET 3 AB3 4 TYR L 192 HIS L 198 -1 O GLN L 195 N ALA L 148 SHEET 4 AB3 4 SER L 201 VAL L 207 -1 O VAL L 203 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.10 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.06 SSBOND 4 CYS L 135 CYS L 194 1555 1555 2.00 CISPEP 1 PHE H 146 PRO H 147 0 -6.09 CISPEP 2 GLU H 148 PRO H 149 0 1.92 CISPEP 3 GLY L 95B PRO L 95C 0 12.97 CISPEP 4 TYR L 141 PRO L 142 0 2.18 CRYST1 54.640 71.302 108.590 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014025 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009209 0.00000