HEADER VIRUS LIKE PARTICLE/IMMUNE SYSTEM 10-SEP-18 6MF7 OBSLTE 13-FEB-19 6MF7 6NN3 TITLE STRUCTURE OF PARVOVIRUS B19 DECORATED WITH FAB MOLECULES FROM A HUMAN TITLE 2 ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: VP2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CAPSID PROTEIN VP2, MAJOR CAPSID PROTEIN VP2, MAJOR VIRUS COMPND 5 CAPSID PROTEIN VP2, VP2 PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTIBODY 860-55D HEAVY CHAIN; COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: FAB; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ANTIBODY 860-55D LIGHT CHAIN; COMPND 14 CHAIN: L; COMPND 15 FRAGMENT: FAB; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PARVOVIRUS B19; SOURCE 3 ORGANISM_COMMON: HPV B19; SOURCE 4 ORGANISM_TAXID: 10798; SOURCE 5 GENE: VP2, VP2; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS B19, VP2, ANTIBODY, EPITOPE, VIRUS LIKE PARTICLE-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR M.G.ROSSMANN,Y.SUN,T.KLOSE,Y.LIU REVDAT 2 13-FEB-19 6MF7 1 OBSLTE REVDAT 1 03-OCT-18 6MF7 0 JRNL AUTH M.G.ROSSMANN,Y.SUN,T.KLOSE,Y.LIU,G.MENG JRNL TITL STRUCTURE OF PARVOVIRUS B19 DECORATED WITH FAB MOLECULES OF JRNL TITL 2 A HUMAN ANTIBODY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : LEGINON, CTFFIND, JALIGN, JALIGN, REMARK 3 JALIGN, RELION, J3DR, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : AB INITIO MODEL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : 100.000 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.200 REMARK 3 NUMBER OF PARTICLES : 7395 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 6MF7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236587. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF B19 VLP WITH FAB REMARK 245 MOLECULES OF ANTIBODY 860-55D; REMARK 245 B19 VLP; ANTIBODY 860-55D FAB REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 1.00 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 1759 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K2 SUMMIT (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 38.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 22500 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT2 2 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT3 2 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT1 3 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT2 3 0.309017 -0.809017 0.500000 280.80000 REMARK 350 BIOMT3 3 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT1 4 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT2 4 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT3 4 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT1 5 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 5 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT3 5 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 6 0.309017 -0.809017 -0.500000 561.60000 REMARK 350 BIOMT2 6 -0.809017 -0.500000 0.309017 561.60000 REMARK 350 BIOMT3 6 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT1 7 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT2 7 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT3 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 8 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT2 8 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT3 8 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT1 9 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT2 9 -0.500000 0.309017 0.809017 107.25605 REMARK 350 BIOMT3 9 0.309017 -0.809017 0.500000 280.80000 REMARK 350 BIOMT1 10 0.809017 -0.500000 0.309017 107.25605 REMARK 350 BIOMT2 10 -0.500000 -0.309017 0.809017 280.80000 REMARK 350 BIOMT3 10 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT1 11 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT2 11 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT3 11 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT1 12 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 12 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 12 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT1 13 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 13 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 13 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT2 14 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT3 14 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT1 15 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT2 15 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT3 15 0.309017 -0.809017 0.500000 280.80000 REMARK 350 BIOMT1 16 -0.500000 0.309017 0.809017 107.25606 REMARK 350 BIOMT2 16 0.309017 -0.809017 0.500000 280.79999 REMARK 350 BIOMT3 16 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT1 17 -0.500000 -0.309017 0.809017 280.80000 REMARK 350 BIOMT2 17 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT3 17 0.809017 -0.500000 0.309017 107.25606 REMARK 350 BIOMT1 18 -0.809017 -0.500000 0.309017 561.60000 REMARK 350 BIOMT2 18 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT3 18 0.309017 -0.809017 -0.500000 561.60000 REMARK 350 BIOMT1 19 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT2 19 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT1 20 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT2 20 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT3 20 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT1 21 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 21 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 -0.809017 -0.500000 561.60000 REMARK 350 BIOMT1 22 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 22 0.000000 -1.000000 0.000000 561.60000 REMARK 350 BIOMT3 22 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT1 23 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT2 23 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT3 23 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT2 24 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT3 24 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT1 25 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT2 25 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT3 25 0.809017 -0.500000 0.309017 107.25605 REMARK 350 BIOMT1 26 0.000000 -1.000000 0.000000 561.60000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT3 26 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT2 27 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT3 27 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT1 28 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT2 28 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT3 28 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT1 29 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT2 29 0.809017 -0.500000 0.309017 107.25605 REMARK 350 BIOMT3 29 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT1 30 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 30 0.309017 -0.809017 -0.500000 561.59999 REMARK 350 BIOMT3 30 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 31 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT2 31 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT3 31 -0.500000 0.309017 0.809017 107.25606 REMARK 350 BIOMT1 32 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT2 32 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT3 32 -0.500000 -0.309017 0.809017 280.80000 REMARK 350 BIOMT1 33 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 33 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.809017 -0.500000 0.309017 561.60000 REMARK 350 BIOMT1 34 0.000000 -1.000000 0.000000 561.59999 REMARK 350 BIOMT2 34 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 34 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT2 35 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT3 35 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT1 36 -0.500000 -0.309017 0.809017 280.79999 REMARK 350 BIOMT2 36 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT3 36 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT1 37 -0.809017 -0.500000 0.309017 561.59999 REMARK 350 BIOMT2 37 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT2 38 0.000000 -1.000000 0.000000 561.59999 REMARK 350 BIOMT3 38 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 39 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT2 39 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT3 39 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 107.25605 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT1 41 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT2 41 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT3 41 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT1 42 0.809017 -0.500000 0.309017 107.25606 REMARK 350 BIOMT2 42 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT3 42 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT1 43 0.309017 -0.809017 -0.500000 561.60000 REMARK 350 BIOMT2 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 44 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT2 44 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 44 0.000000 -1.000000 0.000000 561.59999 REMARK 350 BIOMT1 45 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT2 45 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT3 45 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT1 46 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT2 46 0.809017 -0.500000 0.309017 107.25605 REMARK 350 BIOMT3 46 -0.500000 -0.309017 0.809017 280.80000 REMARK 350 BIOMT1 47 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT2 47 0.309017 -0.809017 -0.500000 561.60000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 561.60000 REMARK 350 BIOMT1 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 48 0.000000 0.000000 -1.000000 561.60000 REMARK 350 BIOMT3 48 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT2 49 0.309017 0.809017 -0.500000 107.25606 REMARK 350 BIOMT3 49 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT1 50 0.309017 -0.809017 0.500000 280.80000 REMARK 350 BIOMT2 50 0.809017 0.500000 0.309017 -173.54394 REMARK 350 BIOMT3 50 -0.500000 0.309017 0.809017 107.25605 REMARK 350 BIOMT1 51 -0.500000 0.309017 -0.809017 561.60000 REMARK 350 BIOMT2 51 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 51 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 52 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 52 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 52 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 53 0.500000 0.309017 0.809017 -173.54394 REMARK 350 BIOMT2 53 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT3 53 0.809017 -0.500000 -0.309017 280.80000 REMARK 350 BIOMT1 54 0.309017 -0.809017 0.500000 280.80000 REMARK 350 BIOMT2 54 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT3 54 0.500000 -0.309017 -0.809017 454.34394 REMARK 350 BIOMT1 55 -0.309017 -0.809017 -0.500000 735.14394 REMARK 350 BIOMT2 55 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT3 55 0.500000 0.309017 -0.809017 280.80000 REMARK 350 BIOMT1 56 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 56 -1.000000 0.000000 0.000000 561.60000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 561.60000 REMARK 350 BIOMT1 57 -0.309017 -0.809017 0.500000 454.34394 REMARK 350 BIOMT2 57 -0.809017 0.500000 0.309017 280.80000 REMARK 350 BIOMT3 57 -0.500000 -0.309017 -0.809017 735.14394 REMARK 350 BIOMT1 58 -0.809017 -0.500000 -0.309017 735.14394 REMARK 350 BIOMT2 58 -0.500000 0.309017 0.809017 107.25605 REMARK 350 BIOMT3 58 -0.309017 0.809017 -0.500000 280.80000 REMARK 350 BIOMT1 59 -0.809017 0.500000 -0.309017 454.34394 REMARK 350 BIOMT2 59 -0.500000 -0.309017 0.809017 280.79999 REMARK 350 BIOMT3 59 0.309017 0.809017 0.500000 -173.54394 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 561.59999 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 ASN A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 GLY A 12 REMARK 465 ALA A 13 REMARK 465 GLY A 14 REMARK 465 GLY A 15 REMARK 465 GLY A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 ASN A 19 REMARK 465 PRO A 20 REMARK 465 CYS A 64 REMARK 465 HIS A 65 REMARK 465 ASN A 66 REMARK 465 ALA A 67 REMARK 465 SER A 68 REMARK 465 GLY A 69 REMARK 465 LYS A 70 REMARK 465 GLU A 71 REMARK 465 ALA A 72 REMARK 465 LYS A 73 REMARK 465 VAL A 74 REMARK 465 CYS A 75 REMARK 465 THR A 76 REMARK 465 ILE A 77 REMARK 465 LYS A 300 REMARK 465 GLU A 301 REMARK 465 GLY A 302 REMARK 465 ASP A 303 REMARK 465 SER A 304 REMARK 465 SER A 305 REMARK 465 ASN A 306 REMARK 465 THR A 307 REMARK 465 GLY A 308 REMARK 465 ALA A 309 REMARK 465 GLY A 310 REMARK 465 LYS A 311 REMARK 465 ALA A 312 REMARK 465 THR A 357 REMARK 465 THR A 358 REMARK 465 TYR A 359 REMARK 465 GLY A 360 REMARK 465 ASN A 361 REMARK 465 ALA A 362 REMARK 465 GLU A 363 REMARK 465 ASP A 364 REMARK 465 LYS A 365 REMARK 465 GLU A 366 REMARK 465 TYR A 367 REMARK 465 GLN A 368 REMARK 465 GLN A 369 REMARK 465 GLY A 397 REMARK 465 THR A 398 REMARK 465 GLN A 399 REMARK 465 GLN A 400 REMARK 465 PRO A 525 REMARK 465 THR A 526 REMARK 465 ALA A 527 REMARK 465 THR A 528 REMARK 465 ASP A 529 REMARK 465 ALA A 530 REMARK 465 LYS A 531 REMARK 465 GLN A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 ARG A 535 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 219 CB - CA - C ANGL. DEV. = -14.2 DEGREES REMARK 500 LEU A 222 CA - CB - CG ANGL. DEV. = 17.5 DEGREES REMARK 500 LYS A 540 C - N - CA ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 34 -153.06 -85.63 REMARK 500 PRO A 47 -75.24 -64.22 REMARK 500 TYR A 48 159.77 173.68 REMARK 500 LYS A 55 70.19 57.49 REMARK 500 VAL A 56 -79.40 -55.30 REMARK 500 PHE A 57 159.30 170.32 REMARK 500 SER A 58 74.87 -153.06 REMARK 500 PRO A 86 44.96 -86.55 REMARK 500 PHE A 92 37.91 -96.32 REMARK 500 SER A 124 -162.93 -79.70 REMARK 500 ASP A 133 80.29 60.22 REMARK 500 LYS A 134 -10.77 -42.51 REMARK 500 VAL A 139 149.49 128.82 REMARK 500 LYS A 158 -138.80 -74.63 REMARK 500 TYR A 159 128.05 -20.95 REMARK 500 ASP A 168 47.08 -92.01 REMARK 500 ILE A 197 -61.81 -123.24 REMARK 500 SER A 198 -71.48 -76.30 REMARK 500 GLU A 215 37.14 -97.11 REMARK 500 PHE A 219 -23.23 73.83 REMARK 500 GLN A 220 77.94 45.50 REMARK 500 LEU A 222 74.97 59.82 REMARK 500 MET A 230 -50.00 -122.27 REMARK 500 ASN A 241 70.49 36.38 REMARK 500 TYR A 257 -9.83 73.65 REMARK 500 THR A 314 -8.90 73.06 REMARK 500 GLN A 322 -10.37 -140.47 REMARK 500 PRO A 330 37.69 -85.46 REMARK 500 LYS A 344 -167.99 -126.17 REMARK 500 ASN A 350 31.14 -91.47 REMARK 500 GLN A 385 -167.25 -125.85 REMARK 500 MET A 410 81.71 60.76 REMARK 500 VAL A 411 -40.42 -29.24 REMARK 500 ASN A 416 -72.07 -24.98 REMARK 500 ARG A 417 -167.50 -164.51 REMARK 500 SER A 428 -84.39 -121.47 REMARK 500 LYS A 429 130.14 177.27 REMARK 500 ASP A 434 -169.99 -78.31 REMARK 500 ASP A 435 70.61 56.43 REMARK 500 THR A 439 10.68 59.79 REMARK 500 LEU A 444 14.08 58.96 REMARK 500 GLN A 451 75.00 53.40 REMARK 500 ILE A 460 -77.99 -93.13 REMARK 500 LEU A 461 167.52 178.77 REMARK 500 ILE A 467 -67.53 -123.65 REMARK 500 ILE A 470 -59.03 -130.35 REMARK 500 THR A 476 -7.96 75.81 REMARK 500 LEU A 478 -72.49 -31.84 REMARK 500 VAL A 479 132.00 -176.47 REMARK 500 TRP A 503 -17.57 70.79 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 55 VAL A 56 -149.38 REMARK 500 THR A 320 SER A 321 -140.92 REMARK 500 THR A 324 ARG A 325 143.21 REMARK 500 TRP A 415 ASN A 416 -132.75 REMARK 500 PRO A 462 GLN A 463 -143.37 REMARK 500 GLN A 463 SER A 464 -138.97 REMARK 500 THR A 477 LEU A 478 -131.25 REMARK 500 LEU A 478 VAL A 479 135.31 REMARK 500 PRO A 519 TYR A 520 -140.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-9110 RELATED DB: EMDB REMARK 900 STRUCTURE OF PARVOVIRUS B19 DECORATED WITH FAB MOLECULES FROM A REMARK 900 HUMAN ANTIBODY DBREF 6MF7 A 1 554 UNP Q76T32 Q76T32_PAVHB 1 554 DBREF 6MF7 H 1 118 PDB 6MF7 6MF7 1 118 DBREF 6MF7 L 1 102 PDB 6MF7 6MF7 1 102 SEQRES 1 A 554 MET THR SER VAL ASN SER ALA GLU ALA SER THR GLY ALA SEQRES 2 A 554 GLY GLY GLY GLY SER ASN PRO VAL LYS SER MET TRP SER SEQRES 3 A 554 GLU GLY ALA THR PHE SER ALA ASN SER VAL THR CYS THR SEQRES 4 A 554 PHE SER ARG GLN PHE LEU ILE PRO TYR ASP PRO GLU HIS SEQRES 5 A 554 HIS TYR LYS VAL PHE SER PRO ALA ALA SER SER CYS HIS SEQRES 6 A 554 ASN ALA SER GLY LYS GLU ALA LYS VAL CYS THR ILE SER SEQRES 7 A 554 PRO ILE MET GLY TYR SER THR PRO TRP ARG TYR LEU ASP SEQRES 8 A 554 PHE ASN ALA LEU ASN LEU PHE PHE SER PRO LEU GLU PHE SEQRES 9 A 554 GLN HIS LEU ILE GLU ASN TYR GLY SER ILE ALA PRO ASP SEQRES 10 A 554 ALA LEU THR VAL THR ILE SER GLU ILE ALA VAL LYS ASP SEQRES 11 A 554 VAL THR ASP LYS THR GLY GLY GLY VAL GLN VAL THR ASP SEQRES 12 A 554 SER THR THR GLY ARG LEU CYS MET LEU VAL ASP HIS GLU SEQRES 13 A 554 TYR LYS TYR PRO TYR VAL LEU GLY GLN GLY GLN ASP THR SEQRES 14 A 554 LEU ALA PRO GLU LEU PRO ILE TRP VAL TYR PHE PRO PRO SEQRES 15 A 554 GLN TYR ALA TYR LEU THR VAL GLY ASP VAL ASN THR GLN SEQRES 16 A 554 GLY ILE SER GLY ASP SER LYS LYS LEU ALA SER GLU GLU SEQRES 17 A 554 SER ALA PHE TYR VAL LEU GLU HIS SER SER PHE GLN LEU SEQRES 18 A 554 LEU GLY THR GLY GLY THR ALA THR MET SER TYR LYS PHE SEQRES 19 A 554 PRO PRO VAL PRO PRO GLU ASN LEU GLU GLY CYS SER GLN SEQRES 20 A 554 HIS PHE TYR GLU MET TYR ASN PRO LEU TYR GLY SER ARG SEQRES 21 A 554 LEU GLY VAL PRO ASP THR LEU GLY GLY ASP PRO LYS PHE SEQRES 22 A 554 ARG SER LEU THR HIS GLU ASP HIS ALA ILE GLN PRO GLN SEQRES 23 A 554 ASN PHE MET PRO GLY PRO LEU VAL ASN SER VAL SER THR SEQRES 24 A 554 LYS GLU GLY ASP SER SER ASN THR GLY ALA GLY LYS ALA SEQRES 25 A 554 LEU THR GLY LEU SER THR GLY THR SER GLN ASN THR ARG SEQRES 26 A 554 ILE SER LEU ARG PRO GLY PRO VAL SER GLN PRO TYR HIS SEQRES 27 A 554 HIS TRP ASP THR ASP LYS TYR VAL THR GLY ILE ASN ALA SEQRES 28 A 554 ILE SER HIS GLY GLN THR THR TYR GLY ASN ALA GLU ASP SEQRES 29 A 554 LYS GLU TYR GLN GLN GLY VAL GLY ARG PHE PRO ASN GLU SEQRES 30 A 554 LYS GLU GLN LEU LYS GLN LEU GLN GLY LEU ASN MET HIS SEQRES 31 A 554 THR TYR PHE PRO ASN LYS GLY THR GLN GLN TYR THR ASP SEQRES 32 A 554 GLN ILE GLU ARG PRO LEU MET VAL GLY SER VAL TRP ASN SEQRES 33 A 554 ARG ARG ALA LEU HIS TYR GLU SER GLN LEU TRP SER LYS SEQRES 34 A 554 ILE PRO ASN LEU ASP ASP SER PHE LYS THR GLN PHE ALA SEQRES 35 A 554 ALA LEU GLY GLY TRP GLY LEU HIS GLN PRO PRO PRO GLN SEQRES 36 A 554 ILE PHE LEU LYS ILE LEU PRO GLN SER GLY PRO ILE GLY SEQRES 37 A 554 GLY ILE LYS SER MET GLY ILE THR THR LEU VAL GLN TYR SEQRES 38 A 554 ALA VAL GLY ILE MET THR VAL THR MET THR PHE LYS LEU SEQRES 39 A 554 GLY PRO ARG LYS ALA THR GLY ARG TRP ASN PRO GLN PRO SEQRES 40 A 554 GLY VAL TYR PRO PRO HIS ALA ALA GLY HIS LEU PRO TYR SEQRES 41 A 554 VAL LEU TYR ASP PRO THR ALA THR ASP ALA LYS GLN HIS SEQRES 42 A 554 HIS ARG HIS GLY TYR GLU LYS PRO GLU GLU LEU TRP THR SEQRES 43 A 554 ALA LYS SER ARG VAL HIS PRO LEU SEQRES 1 H 118 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 118 ALA SER ASP THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 118 GLY SER LEU ALA ALA ALA PHE TYR TRP SER TRP ILE ARG SEQRES 4 H 118 GLN ALA PRO GLY LYS GLY LEU GLU TRP ILE GLY TYR ILE SEQRES 5 H 118 TYR TYR SER GLY SER ALA TYR TYR SER PRO SER LEU GLU SEQRES 6 H 118 SER ARG VAL THR MET SER ASP ALA ALA ALA ALA ALA ALA SEQRES 7 H 118 ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA VAL TYR TYR SEQRES 8 H 118 CYS VAL ARG ALA ALA ALA ALA ALA ALA ALA ALA ALA ALA SEQRES 9 H 118 ALA ALA PHE ALA SER TRP GLY GLN GLY THR LEU VAL THR SEQRES 10 H 118 VAL SEQRES 1 L 102 ALA ALA ALA LEU THR GLN PRO LEU SER VAL SER VAL SER SEQRES 2 L 102 PRO GLY GLN THR ALA ILE PHE THR CYS SER GLY ASP ASN SEQRES 3 L 102 LEU GLY ASP LYS TYR VAL TYR TRP PHE GLN GLN ARG PRO SEQRES 4 L 102 GLY GLN SER PRO ALA LEU LEU ILE TYR GLN ASP ASN LYS SEQRES 5 L 102 ARG PRO SER GLY ILE PRO GLU ARG PHE SER GLY SER ASN SEQRES 6 L 102 SER GLY ASN THR ALA THR LEU THR ILE SER GLY THR GLN SEQRES 7 L 102 SER THR ASP GLU ALA ASP TYR TYR CYS GLN THR TRP ASP SEQRES 8 L 102 SER THR VAL VAL PHE GLY GLY GLY THR LYS LEU HELIX 1 AA1 SER A 100 GLU A 109 1 10 HELIX 2 AA2 GLU A 377 LYS A 382 1 6 HELIX 3 AA3 PRO H 62 GLU H 65 5 4 SHEET 1 AA1 4 GLY A 28 THR A 30 0 SHEET 2 AA1 4 VAL A 36 ILE A 46 -1 O THR A 39 N GLY A 28 SHEET 3 AA1 4 GLN A 480 LYS A 493 -1 O MET A 490 N CYS A 38 SHEET 4 AA1 4 LYS A 129 ASP A 130 -1 N LYS A 129 O TYR A 481 SHEET 1 AA2 5 GLY A 28 THR A 30 0 SHEET 2 AA2 5 VAL A 36 ILE A 46 -1 O THR A 39 N GLY A 28 SHEET 3 AA2 5 GLN A 480 LYS A 493 -1 O MET A 490 N CYS A 38 SHEET 4 AA2 5 ALA A 115 ILE A 123 -1 N THR A 122 O THR A 487 SHEET 5 AA2 5 TYR A 232 LYS A 233 -1 O TYR A 232 N LEU A 119 SHEET 1 AA3 2 GLY A 82 ARG A 88 0 SHEET 2 AA3 2 GLN A 183 LEU A 187 -1 O TYR A 184 N TRP A 87 SHEET 1 AA4 2 CYS A 150 VAL A 153 0 SHEET 2 AA4 2 ILE A 456 LYS A 459 -1 O PHE A 457 N LEU A 152 SHEET 1 AA5 2 ASP A 191 THR A 194 0 SHEET 2 AA5 2 SER A 201 LEU A 204 -1 O LEU A 204 N ASP A 191 SHEET 1 AA6 2 MET A 289 PRO A 290 0 SHEET 2 AA6 2 SER A 413 VAL A 414 1 O VAL A 414 N MET A 289 SHEET 1 AA7 2 HIS A 339 TRP A 340 0 SHEET 2 AA7 2 TYR A 345 VAL A 346 -1 O VAL A 346 N HIS A 339 SHEET 1 AA8 2 THR A 391 PHE A 393 0 SHEET 2 AA8 2 THR A 402 GLN A 404 -1 O GLN A 404 N THR A 391 SHEET 1 AA9 2 GLN H 3 GLN H 5 0 SHEET 2 AA9 2 THR H 23 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 1 AB1 3 LEU H 20 THR H 21 0 SHEET 2 AB1 3 ALA H 77 ALA H 78 -1 O ALA H 78 N LEU H 20 SHEET 3 AB1 3 MET H 70 SER H 71 -1 N SER H 71 O ALA H 77 SHEET 1 AB2 5 ALA H 58 TYR H 60 0 SHEET 2 AB2 5 LEU H 46 ILE H 52 -1 N TYR H 51 O TYR H 59 SHEET 3 AB2 5 TRP H 35 GLN H 40 -1 N ARG H 39 O GLU H 47 SHEET 4 AB2 5 ALA H 88 ALA H 95 -1 O VAL H 93 N SER H 36 SHEET 5 AB2 5 PHE H 107 TRP H 110 -1 O ALA H 108 N ARG H 94 SHEET 1 AB3 5 ALA H 58 TYR H 60 0 SHEET 2 AB3 5 LEU H 46 ILE H 52 -1 N TYR H 51 O TYR H 59 SHEET 3 AB3 5 TRP H 35 GLN H 40 -1 N ARG H 39 O GLU H 47 SHEET 4 AB3 5 ALA H 88 ALA H 95 -1 O VAL H 93 N SER H 36 SHEET 5 AB3 5 THR H 114 VAL H 116 -1 O THR H 114 N TYR H 90 SHEET 1 AB4 3 ALA L 18 ILE L 19 0 SHEET 2 AB4 3 THR L 69 ILE L 74 -1 O ILE L 74 N ALA L 18 SHEET 3 AB4 3 CYS L 22 SER L 23 -1 N CYS L 22 O ALA L 70 SHEET 1 AB5 3 ALA L 18 ILE L 19 0 SHEET 2 AB5 3 THR L 69 ILE L 74 -1 O ILE L 74 N ALA L 18 SHEET 3 AB5 3 PHE L 61 SER L 66 -1 N SER L 62 O THR L 73 SHEET 1 AB6 4 LEU L 45 ILE L 47 0 SHEET 2 AB6 4 TYR L 33 GLN L 37 -1 N TRP L 34 O LEU L 46 SHEET 3 AB6 4 ASP L 84 THR L 89 -1 O GLN L 88 N TYR L 33 SHEET 4 AB6 4 VAL L 95 PHE L 96 -1 O VAL L 95 N THR L 89 SHEET 1 AB7 4 LEU L 45 ILE L 47 0 SHEET 2 AB7 4 TYR L 33 GLN L 37 -1 N TRP L 34 O LEU L 46 SHEET 3 AB7 4 ASP L 84 THR L 89 -1 O GLN L 88 N TYR L 33 SHEET 4 AB7 4 THR L 100 LYS L 101 -1 O THR L 100 N TYR L 85 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 2 CYS L 22 CYS L 87 1555 1555 2.03 CISPEP 1 PHE A 437 LYS A 438 0 -10.48 CISPEP 2 GLY A 465 PRO A 466 0 -17.93 CISPEP 3 HIS A 552 PRO A 553 0 -0.52 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000