HEADER TRANSCRIPTION/DNA 12-SEP-18 6MG2 TITLE C-TERMINAL BZIP DOMAIN OF HUMAN C/EBPBETA WITH 16BP METHYLATED TITLE 2 OLIGONUCLEOTIDE CONTAINING CONSENSUS RECOGNITION SEQUENCE-C2221 TITLE 3 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CCAAT/ENHANCER-BINDING PROTEIN BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: C/EBP BETA,LIVER ACTIVATOR PROTEIN,LAP,LIVER-ENRICHED COMPND 5 INHIBITORY PROTEIN,LIP,NUCLEAR FACTOR NF-IL6,TRANSCRIPTION FACTOR 5, COMPND 6 TCF-5; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 16-BP METHYLATED OLIGONUCLEOTIDE; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CEBPB, TCF5, PP9092; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS BZIP TRANSCIPTION FACTOR DNA METHYLATION CPA METHYLATION PROTEIN-DNA KEYWDS 2 COMPLEX, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,J.YANG REVDAT 5 11-OCT-23 6MG2 1 REMARK REVDAT 4 01-JAN-20 6MG2 1 REMARK REVDAT 3 28-AUG-19 6MG2 1 JRNL REMARK REVDAT 2 16-JAN-19 6MG2 1 JRNL REVDAT 1 12-DEC-18 6MG2 0 JRNL AUTH J.YANG,J.R.HORTON,D.WANG,R.REN,J.LI,D.SUN,Y.HUANG,X.ZHANG, JRNL AUTH 2 R.M.BLUMENTHAL,X.CHENG JRNL TITL STRUCTURAL BASIS FOR EFFECTS OF CPA MODIFICATIONS ON C/EBP JRNL TITL 2 BETA BINDING OF DNA. JRNL REF NUCLEIC ACIDS RES. V. 47 1774 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 30566668 JRNL DOI 10.1093/NAR/GKY1264 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 63591 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 3162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.9086 - 5.4756 1.00 2645 137 0.1555 0.2098 REMARK 3 2 5.4756 - 4.3491 1.00 2647 140 0.1588 0.1989 REMARK 3 3 4.3491 - 3.8002 1.00 2626 137 0.1315 0.1636 REMARK 3 4 3.8002 - 3.4531 1.00 2645 137 0.1548 0.1637 REMARK 3 5 3.4531 - 3.2058 0.99 2635 133 0.1597 0.2192 REMARK 3 6 3.2058 - 3.0169 0.99 2599 135 0.1877 0.2179 REMARK 3 7 3.0169 - 2.8659 0.99 2658 140 0.1914 0.2396 REMARK 3 8 2.8659 - 2.7412 1.00 2595 140 0.1913 0.2441 REMARK 3 9 2.7412 - 2.6357 1.00 2661 138 0.1821 0.1909 REMARK 3 10 2.6357 - 2.5448 1.00 2604 135 0.1776 0.2171 REMARK 3 11 2.5448 - 2.4652 1.00 2669 142 0.1813 0.2034 REMARK 3 12 2.4652 - 2.3948 1.00 2624 135 0.1902 0.2206 REMARK 3 13 2.3948 - 2.3318 1.00 2662 141 0.1898 0.2015 REMARK 3 14 2.3318 - 2.2749 1.00 2636 136 0.1912 0.1986 REMARK 3 15 2.2749 - 2.2232 1.00 2637 138 0.1891 0.2506 REMARK 3 16 2.2232 - 2.1759 1.00 2663 138 0.2022 0.2162 REMARK 3 17 2.1759 - 2.1324 1.00 2643 139 0.2098 0.2698 REMARK 3 18 2.1324 - 2.0921 1.00 2638 134 0.2204 0.2569 REMARK 3 19 2.0921 - 2.0548 1.00 2634 142 0.2397 0.2859 REMARK 3 20 2.0548 - 2.0199 1.00 2620 138 0.2440 0.2630 REMARK 3 21 2.0199 - 1.9874 1.00 2641 136 0.2543 0.2478 REMARK 3 22 1.9874 - 1.9568 0.99 2586 141 0.2709 0.3128 REMARK 3 23 1.9568 - 1.9280 0.92 2461 130 0.3036 0.3470 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 1869 REMARK 3 ANGLE : 0.939 2647 REMARK 3 CHIRALITY : 0.041 293 REMARK 3 PLANARITY : 0.004 231 REMARK 3 DIHEDRAL : 25.057 1031 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 332 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3083 52.4401 34.0304 REMARK 3 T TENSOR REMARK 3 T11: 0.3874 T22: 0.3392 REMARK 3 T33: 0.2908 T12: 0.0468 REMARK 3 T13: -0.0271 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 1.5008 L22: 6.8421 REMARK 3 L33: 2.7615 L12: -3.4215 REMARK 3 L13: 2.0984 L23: -5.2150 REMARK 3 S TENSOR REMARK 3 S11: -0.0805 S12: -0.2352 S13: -0.1215 REMARK 3 S21: -0.0338 S22: 0.3926 S23: 0.3179 REMARK 3 S31: 0.0301 S32: -0.2358 S33: -0.3137 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 268 THROUGH 336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7420 53.4369 25.0202 REMARK 3 T TENSOR REMARK 3 T11: 0.2106 T22: 0.2379 REMARK 3 T33: 0.1727 T12: 0.0087 REMARK 3 T13: 0.0093 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 0.6457 L22: 2.9818 REMARK 3 L33: 0.7851 L12: 1.1897 REMARK 3 L13: -0.1866 L23: -1.1252 REMARK 3 S TENSOR REMARK 3 S11: -0.0232 S12: 0.0236 S13: -0.0512 REMARK 3 S21: -0.2530 S22: -0.0378 S23: -0.0531 REMARK 3 S31: 0.0509 S32: -0.0253 S33: 0.0505 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4267 28.0647 36.2443 REMARK 3 T TENSOR REMARK 3 T11: 0.2191 T22: 0.2653 REMARK 3 T33: 0.1742 T12: 0.0264 REMARK 3 T13: 0.0305 T23: 0.0083 REMARK 3 L TENSOR REMARK 3 L11: 8.3443 L22: 1.6076 REMARK 3 L33: 2.2771 L12: 0.3594 REMARK 3 L13: 3.4186 L23: 0.6880 REMARK 3 S TENSOR REMARK 3 S11: -0.1040 S12: 0.2795 S13: -0.1788 REMARK 3 S21: -0.1024 S22: 0.0025 S23: -0.0458 REMARK 3 S31: 0.0910 S32: 0.1680 S33: 0.0919 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 101 THROUGH 116 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.6257 28.7966 38.1146 REMARK 3 T TENSOR REMARK 3 T11: 0.2382 T22: 0.2587 REMARK 3 T33: 0.2283 T12: 0.0242 REMARK 3 T13: 0.0305 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 2.4730 L22: 0.9898 REMARK 3 L33: 2.6475 L12: 1.2987 REMARK 3 L13: 2.1342 L23: 0.3035 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: -0.2594 S13: 0.0770 REMARK 3 S21: -0.0124 S22: -0.0148 S23: -0.0217 REMARK 3 S31: 0.1397 S32: 0.0540 S33: 0.0585 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MG2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-FEB-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU HYPIX-6000HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63673 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.928 REMARK 200 RESOLUTION RANGE LOW (A) : 33.903 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.60 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2E42 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE TRIHYDRATE PH REMARK 280 7.0, 12% (W/V) POLYETHYLENE GLYCOL 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.82650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.82650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 50.92700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.82400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 50.92700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.82400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 37.82650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 50.92700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.82400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 37.82650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 50.92700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.82400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 267 REMARK 465 GLN A 333 REMARK 465 LEU A 334 REMARK 465 PRO A 335 REMARK 465 GLU A 336 REMARK 465 PRO A 337 REMARK 465 LEU A 338 REMARK 465 LEU A 339 REMARK 465 ALA A 340 REMARK 465 SER A 341 REMARK 465 SER A 342 REMARK 465 GLY A 343 REMARK 465 HIS A 344 REMARK 465 HIS B 267 REMARK 465 PRO B 337 REMARK 465 LEU B 338 REMARK 465 LEU B 339 REMARK 465 ALA B 340 REMARK 465 SER B 341 REMARK 465 SER B 342 REMARK 465 GLY B 343 REMARK 465 HIS B 344 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 268 CG SD CE REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 ARG A 277 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 MET B 268 CG SD CE REMARK 470 LYS B 269 CG CD CE NZ REMARK 470 HIS B 270 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 GLU B 279 CG CD OE1 OE2 REMARK 470 LYS B 291 CG CD CE NZ REMARK 470 GLU B 336 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS B 270 61.63 -112.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 501 DBREF 6MG2 A 269 344 UNP P17676 CEBPB_HUMAN 246 321 DBREF 6MG2 B 269 344 UNP P17676 CEBPB_HUMAN 246 321 DBREF 6MG2 C 1 16 PDB 6MG2 6MG2 1 16 DBREF 6MG2 D 101 116 PDB 6MG2 6MG2 101 116 SEQADV 6MG2 HIS A 267 UNP P17676 EXPRESSION TAG SEQADV 6MG2 MET A 268 UNP P17676 EXPRESSION TAG SEQADV 6MG2 HIS B 267 UNP P17676 EXPRESSION TAG SEQADV 6MG2 MET B 268 UNP P17676 EXPRESSION TAG SEQRES 1 A 78 HIS MET LYS HIS SER ASP GLU TYR LYS ILE ARG ARG GLU SEQRES 2 A 78 ARG ASN ASN ILE ALA VAL ARG LYS SER ARG ASP LYS ALA SEQRES 3 A 78 LYS MET ARG ASN LEU GLU THR GLN HIS LYS VAL LEU GLU SEQRES 4 A 78 LEU THR ALA GLU ASN GLU ARG LEU GLN LYS LYS VAL GLU SEQRES 5 A 78 GLN LEU SER ARG GLU LEU SER THR LEU ARG ASN LEU PHE SEQRES 6 A 78 LYS GLN LEU PRO GLU PRO LEU LEU ALA SER SER GLY HIS SEQRES 1 B 78 HIS MET LYS HIS SER ASP GLU TYR LYS ILE ARG ARG GLU SEQRES 2 B 78 ARG ASN ASN ILE ALA VAL ARG LYS SER ARG ASP LYS ALA SEQRES 3 B 78 LYS MET ARG ASN LEU GLU THR GLN HIS LYS VAL LEU GLU SEQRES 4 B 78 LEU THR ALA GLU ASN GLU ARG LEU GLN LYS LYS VAL GLU SEQRES 5 B 78 GLN LEU SER ARG GLU LEU SER THR LEU ARG ASN LEU PHE SEQRES 6 B 78 LYS GLN LEU PRO GLU PRO LEU LEU ALA SER SER GLY HIS SEQRES 1 C 16 DT DA DT DA DT DT DG 5CM DG 5CM DA DA DT SEQRES 2 C 16 DA DT DA SEQRES 1 D 16 DT DA DT DA DT DT DG 5CM DG 5CM DA DA DT SEQRES 2 D 16 DA DT DA HET 5CM C 8 20 HET 5CM C 10 20 HET 5CM D 108 20 HET 5CM D 110 20 HET EDO A 401 4 HET EDO D 501 4 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 5CM 4(C10 H16 N3 O7 P) FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 HOH *290(H2 O) HELIX 1 AA1 SER A 271 ASN A 329 1 59 HELIX 2 AA2 SER B 271 GLN B 333 1 63 LINK O3' DG C 7 P 5CM C 8 1555 1555 1.60 LINK O3' 5CM C 8 P DG C 9 1555 1555 1.61 LINK O3' DG C 9 P 5CM C 10 1555 1555 1.61 LINK O3' 5CM C 10 P DA C 11 1555 1555 1.61 LINK O3' DG D 107 P 5CM D 108 1555 1555 1.60 LINK O3' 5CM D 108 P DG D 109 1555 1555 1.61 LINK O3' DG D 109 P 5CM D 110 1555 1555 1.61 LINK O3' 5CM D 110 P DA D 111 1555 1555 1.61 CISPEP 1 LYS B 269 HIS B 270 0 -8.21 SITE 1 AC1 4 ASP A 290 LYS A 293 DG C 7 HOH C 121 SITE 1 AC2 3 HOH B 405 DA D 111 DA D 112 CRYST1 101.854 113.648 75.653 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008799 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013218 0.00000