HEADER TRANSFERASE 13-SEP-18 6MGC TITLE ESCHERICHIA COLI KPSC, N-TERMINAL DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAPSULE POLYSACCHARIDE EXPORT PROTEIN KPSC; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 2-352); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O1:K1 / APEC; SOURCE 3 ORGANISM_TAXID: 405955; SOURCE 4 GENE: KPSC, APECO1_3478; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS GLYCOSYLTRANSFERASE, CYTOSINE MONOPHOSPHATE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.DOYLE,E.MALLETTE,M.S.KIMBER REVDAT 7 13-MAR-24 6MGC 1 REMARK REVDAT 6 08-JAN-20 6MGC 1 REMARK REVDAT 5 29-MAY-19 6MGC 1 JRNL REVDAT 4 15-MAY-19 6MGC 1 JRNL REVDAT 3 08-MAY-19 6MGC 1 JRNL REVDAT 2 01-MAY-19 6MGC 1 JRNL REVDAT 1 27-MAR-19 6MGC 0 JRNL AUTH L.DOYLE,O.G.OVCHINNIKOVA,K.MYLER,E.MALLETTE,B.S.HUANG, JRNL AUTH 2 T.L.LOWARY,M.S.KIMBER,C.WHITFIELD JRNL TITL BIOSYNTHESIS OF A CONSERVED GLYCOLIPID ANCHOR FOR JRNL TITL 2 GRAM-NEGATIVE BACTERIAL CAPSULES. JRNL REF NAT.CHEM.BIOL. V. 15 632 2019 JRNL REFN ESSN 1552-4469 JRNL PMID 31036922 JRNL DOI 10.1038/S41589-019-0276-8 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.57 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 64806 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.5958 - 3.8386 1.00 2891 153 0.1494 0.1616 REMARK 3 2 3.8386 - 3.0470 1.00 2762 145 0.1485 0.1662 REMARK 3 3 3.0470 - 2.6619 1.00 2712 143 0.1560 0.1720 REMARK 3 4 2.6619 - 2.4185 1.00 2717 143 0.1452 0.1547 REMARK 3 5 2.4185 - 2.2452 1.00 2685 141 0.1455 0.1770 REMARK 3 6 2.2452 - 2.1128 1.00 2702 142 0.1428 0.1744 REMARK 3 7 2.1128 - 2.0070 1.00 2684 142 0.1508 0.1571 REMARK 3 8 2.0070 - 1.9196 1.00 2680 141 0.1564 0.1531 REMARK 3 9 1.9196 - 1.8457 1.00 2657 140 0.1565 0.1928 REMARK 3 10 1.8457 - 1.7820 1.00 2694 142 0.1496 0.1819 REMARK 3 11 1.7820 - 1.7263 1.00 2651 139 0.1558 0.1953 REMARK 3 12 1.7263 - 1.6769 1.00 2663 140 0.1535 0.1781 REMARK 3 13 1.6769 - 1.6328 1.00 2642 140 0.1615 0.2148 REMARK 3 14 1.6328 - 1.5930 1.00 2663 140 0.1569 0.1701 REMARK 3 15 1.5930 - 1.5567 1.00 2646 139 0.1643 0.1952 REMARK 3 16 1.5567 - 1.5236 1.00 2643 140 0.1720 0.1977 REMARK 3 17 1.5236 - 1.4931 1.00 2634 138 0.1828 0.2062 REMARK 3 18 1.4931 - 1.4650 1.00 2671 141 0.1856 0.1989 REMARK 3 19 1.4650 - 1.4388 1.00 2630 139 0.2052 0.2088 REMARK 3 20 1.4388 - 1.4144 1.00 2653 139 0.2186 0.2438 REMARK 3 21 1.4144 - 1.3916 1.00 2642 140 0.2516 0.2748 REMARK 3 22 1.3916 - 1.3702 0.99 2614 136 0.2792 0.3032 REMARK 3 23 1.3702 - 1.3500 0.99 2629 138 0.2999 0.3138 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.730 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2608 REMARK 3 ANGLE : 0.979 3569 REMARK 3 CHIRALITY : 0.121 400 REMARK 3 PLANARITY : 0.007 460 REMARK 3 DIHEDRAL : 20.138 956 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.2816 37.4522 39.6477 REMARK 3 T TENSOR REMARK 3 T11: 0.3922 T22: 0.2446 REMARK 3 T33: 0.1950 T12: -0.0279 REMARK 3 T13: 0.0351 T23: -0.0065 REMARK 3 L TENSOR REMARK 3 L11: 4.1414 L22: 3.7479 REMARK 3 L33: 2.9244 L12: 2.2651 REMARK 3 L13: -2.1397 L23: -0.1203 REMARK 3 S TENSOR REMARK 3 S11: 0.5067 S12: -0.2738 S13: 0.3207 REMARK 3 S21: 0.9900 S22: -0.1637 S23: 0.2582 REMARK 3 S31: -0.4104 S32: 0.0784 S33: -0.1968 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 45 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.2562 30.9880 37.6835 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2471 REMARK 3 T33: 0.1930 T12: 0.0229 REMARK 3 T13: 0.0555 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 2.9582 L22: 3.4032 REMARK 3 L33: 4.5382 L12: 1.2744 REMARK 3 L13: -2.4061 L23: -0.3335 REMARK 3 S TENSOR REMARK 3 S11: 0.1807 S12: 0.0744 S13: 0.0432 REMARK 3 S21: 0.3586 S22: 0.0546 S23: 0.4460 REMARK 3 S31: -0.2593 S32: -0.5479 S33: -0.0615 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 46 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0102 29.5069 32.7065 REMARK 3 T TENSOR REMARK 3 T11: 0.2377 T22: 0.2045 REMARK 3 T33: 0.1711 T12: 0.0019 REMARK 3 T13: -0.0009 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 3.6221 L22: 3.2885 REMARK 3 L33: 2.9921 L12: 1.1586 REMARK 3 L13: -1.6996 L23: -0.5358 REMARK 3 S TENSOR REMARK 3 S11: -0.1750 S12: -0.1033 S13: -0.4903 REMARK 3 S21: 0.2282 S22: 0.0438 S23: -0.0595 REMARK 3 S31: 0.0556 S32: -0.1975 S33: 0.0182 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3351 31.8578 25.0083 REMARK 3 T TENSOR REMARK 3 T11: 0.1504 T22: 0.1322 REMARK 3 T33: 0.1390 T12: 0.0111 REMARK 3 T13: 0.0007 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 1.6337 L22: 3.1562 REMARK 3 L33: 3.4343 L12: 0.5869 REMARK 3 L13: -1.0910 L23: 0.1612 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.1361 S13: -0.1368 REMARK 3 S21: 0.1772 S22: 0.0007 S23: 0.0375 REMARK 3 S31: 0.0378 S32: -0.0108 S33: -0.0603 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1541 44.0257 16.6547 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.2127 REMARK 3 T33: 0.3139 T12: -0.0226 REMARK 3 T13: 0.0347 T23: 0.0298 REMARK 3 L TENSOR REMARK 3 L11: 4.7281 L22: 2.9413 REMARK 3 L33: 1.5950 L12: -1.6160 REMARK 3 L13: 1.6747 L23: -1.0524 REMARK 3 S TENSOR REMARK 3 S11: 0.0375 S12: 0.2113 S13: 0.3963 REMARK 3 S21: -0.0751 S22: -0.1957 S23: -0.6592 REMARK 3 S31: -0.1064 S32: 0.3480 S33: 0.0974 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 169 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8804 23.3364 25.8728 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.2429 REMARK 3 T33: 0.3450 T12: 0.0093 REMARK 3 T13: -0.0612 T23: 0.0326 REMARK 3 L TENSOR REMARK 3 L11: 1.6288 L22: 2.2183 REMARK 3 L33: 1.1781 L12: 0.2386 REMARK 3 L13: 0.1613 L23: 0.1428 REMARK 3 S TENSOR REMARK 3 S11: -0.1038 S12: -0.1888 S13: 0.2603 REMARK 3 S21: 0.1231 S22: -0.0464 S23: -0.4971 REMARK 3 S31: 0.0135 S32: 0.3351 S33: 0.0853 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 170 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.3682 14.8027 20.4829 REMARK 3 T TENSOR REMARK 3 T11: 0.2228 T22: 0.2528 REMARK 3 T33: 0.4163 T12: 0.0542 REMARK 3 T13: 0.0252 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 2.4178 L22: 2.3690 REMARK 3 L33: 1.9939 L12: -0.1053 REMARK 3 L13: -0.7204 L23: -0.1426 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0018 S13: -0.3013 REMARK 3 S21: -0.0280 S22: -0.1145 S23: -0.7809 REMARK 3 S31: 0.1995 S32: 0.4154 S33: 0.1067 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0629 12.8333 28.4615 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.3604 REMARK 3 T33: 0.5948 T12: 0.1000 REMARK 3 T13: -0.0448 T23: 0.1624 REMARK 3 L TENSOR REMARK 3 L11: 6.3604 L22: 1.3155 REMARK 3 L33: 5.5056 L12: 1.6229 REMARK 3 L13: -1.2060 L23: -2.4356 REMARK 3 S TENSOR REMARK 3 S11: -0.4911 S12: -0.6964 S13: -0.1765 REMARK 3 S21: 0.4769 S22: -0.3731 S23: -1.2216 REMARK 3 S31: 0.4170 S32: 0.9187 S33: 0.3690 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9461 27.2128 15.9352 REMARK 3 T TENSOR REMARK 3 T11: 0.1903 T22: 0.1881 REMARK 3 T33: 0.2212 T12: 0.0023 REMARK 3 T13: 0.0370 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 1.6343 L22: 3.2106 REMARK 3 L33: 1.0581 L12: -0.3801 REMARK 3 L13: -0.1938 L23: -0.0047 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: 0.0355 S13: -0.0402 REMARK 3 S21: -0.1747 S22: -0.0787 S23: -0.4767 REMARK 3 S31: 0.0120 S32: 0.1768 S33: 0.0364 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 323 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2176 43.9390 32.0521 REMARK 3 T TENSOR REMARK 3 T11: 0.3241 T22: 0.2996 REMARK 3 T33: 0.3089 T12: -0.0671 REMARK 3 T13: -0.1198 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 3.2302 L22: 2.2182 REMARK 3 L33: 2.5510 L12: -0.1222 REMARK 3 L13: 0.4046 L23: 0.3012 REMARK 3 S TENSOR REMARK 3 S11: -0.0121 S12: -0.4263 S13: 0.2293 REMARK 3 S21: 0.4618 S22: 0.0140 S23: -0.6292 REMARK 3 S31: -0.3825 S32: 0.4547 S33: 0.0036 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 64850 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.06264 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.71000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.150 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M BIS-TRIS, REMARK 280 19% V/V PEG3350, 15 MG/ML PROTEIN WITH 1 MM CMP, PH 5.25, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.11000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.79500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.29000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.79500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.11000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.29000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 144 REMARK 465 SER A 145 REMARK 465 GLU A 146 REMARK 465 ARG A 147 REMARK 465 LEU A 324 REMARK 465 GLN A 325 REMARK 465 GLN A 326 REMARK 465 ARG A 327 REMARK 465 ASN A 328 REMARK 465 GLY A 329 REMARK 465 TYR A 330 REMARK 465 LEU A 331 REMARK 465 TRP A 332 REMARK 465 ALA A 333 REMARK 465 PRO A 334 REMARK 465 GLY A 335 REMARK 465 LEU A 336 REMARK 465 THR A 337 REMARK 465 LEU A 338 REMARK 465 TRP A 339 REMARK 465 LYS A 340 REMARK 465 SER A 341 REMARK 465 ALA A 342 REMARK 465 ILE A 343 REMARK 465 LEU A 344 REMARK 465 LYS A 345 REMARK 465 PRO A 346 REMARK 465 PHE A 347 REMARK 465 LEU A 348 REMARK 465 ARG A 349 REMARK 465 THR A 350 REMARK 465 PRO A 351 REMARK 465 THR A 352 REMARK 465 LEU A 353 REMARK 465 GLU A 354 REMARK 465 HIS A 355 REMARK 465 HIS A 356 REMARK 465 HIS A 357 REMARK 465 HIS A 358 REMARK 465 HIS A 359 REMARK 465 HIS A 360 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 545 O HOH A 696 1.91 REMARK 500 NE2 GLN A 118 O HOH A 501 2.05 REMARK 500 O2 SO4 A 403 O HOH A 502 2.09 REMARK 500 O HOH A 533 O HOH A 719 2.11 REMARK 500 O HOH A 562 O HOH A 704 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 662 O HOH A 710 3545 1.94 REMARK 500 O HOH A 600 O HOH A 705 3555 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 254 CB CYS A 254 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 64 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 64 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 LEU A 288 CB - CG - CD1 ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 132 -164.96 -160.64 REMARK 500 ASN A 135 29.56 -145.14 REMARK 500 ASN A 149 93.92 -69.48 REMARK 500 GLN A 213 -111.66 51.11 REMARK 500 ALA A 219 52.53 -99.53 REMARK 500 VAL A 237 -74.97 -95.37 REMARK 500 SER A 308 -157.26 -145.47 REMARK 500 ARG A 322 7.38 -65.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue C5P A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 403 DBREF1 6MGC A 2 352 UNP A0A0H2Z2W8_ECOK1 DBREF2 6MGC A A0A0H2Z2W8 2 352 SEQADV 6MGC MET A 0 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC GLY A 1 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC LEU A 353 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC GLU A 354 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 355 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 356 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 357 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 358 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 359 UNP A0A0H2Z2W EXPRESSION TAG SEQADV 6MGC HIS A 360 UNP A0A0H2Z2W EXPRESSION TAG SEQRES 1 A 361 MET GLY ILE GLY ILE TYR SER PRO GLY ILE TRP ARG ILE SEQRES 2 A 361 PRO HIS LEU GLU LYS PHE LEU ALA GLN PRO CYS GLN LYS SEQRES 3 A 361 LEU SER LEU LEU ARG PRO VAL PRO GLN GLU VAL ASN ALA SEQRES 4 A 361 ILE ALA VAL TRP GLY HIS ARG PRO SER ALA ALA LYS PRO SEQRES 5 A 361 VAL ALA ILE ALA LYS ALA ALA GLY LYS PRO VAL ILE ARG SEQRES 6 A 361 LEU GLU ASP GLY PHE VAL ARG SER LEU ASP LEU GLY VAL SEQRES 7 A 361 ASN GLY GLU PRO PRO LEU SER LEU VAL VAL ASP ASP CYS SEQRES 8 A 361 GLY ILE TYR TYR ASP ALA SER LYS PRO SER ALA LEU GLU SEQRES 9 A 361 LYS LEU VAL GLN ASP LYS ALA GLY ASN THR ALA LEU ILE SEQRES 10 A 361 SER GLN ALA ARG GLU ALA MET HIS THR ILE VAL THR GLY SEQRES 11 A 361 ASP MET SER LYS TYR ASN LEU ALA PRO ALA PHE VAL ALA SEQRES 12 A 361 ASP GLU SER GLU ARG THR ASN ILE VAL LEU VAL VAL ASP SEQRES 13 A 361 GLN THR PHE ASN ASP MET SER VAL THR TYR GLY ASN ALA SEQRES 14 A 361 GLY PRO HIS GLU PHE ALA ALA MET LEU GLU ALA ALA MET SEQRES 15 A 361 ALA GLU ASN PRO GLN ALA GLU ILE TRP VAL LYS VAL HIS SEQRES 16 A 361 PRO ASP VAL LEU GLU GLY LYS LYS THR GLY TYR PHE ALA SEQRES 17 A 361 ASP LEU ARG ALA THR GLN ARG VAL ARG LEU ILE ALA GLU SEQRES 18 A 361 ASN VAL SER PRO GLN SER LEU LEU ARG HIS VAL SER ARG SEQRES 19 A 361 VAL TYR VAL VAL THR SER GLN TYR GLY PHE GLU ALA LEU SEQRES 20 A 361 LEU ALA GLY LYS PRO VAL THR CYS PHE GLY GLN PRO TRP SEQRES 21 A 361 TYR ALA SER TRP GLY LEU THR ASP ASP ARG HIS PRO GLN SEQRES 22 A 361 SER ALA LEU LEU SER ALA ARG ARG GLY SER ALA THR LEU SEQRES 23 A 361 GLU GLU LEU PHE ALA ALA ALA TYR LEU ARG TYR CYS ARG SEQRES 24 A 361 TYR ILE ASP PRO GLN THR GLY GLU VAL SER ASP LEU PHE SEQRES 25 A 361 THR VAL LEU GLN TRP LEU GLN LEU GLN ARG ARG HIS LEU SEQRES 26 A 361 GLN GLN ARG ASN GLY TYR LEU TRP ALA PRO GLY LEU THR SEQRES 27 A 361 LEU TRP LYS SER ALA ILE LEU LYS PRO PHE LEU ARG THR SEQRES 28 A 361 PRO THR LEU GLU HIS HIS HIS HIS HIS HIS HET C5P A 401 33 HET CL A 402 1 HET SO4 A 403 5 HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION FORMUL 2 C5P C9 H14 N3 O8 P FORMUL 3 CL CL 1- FORMUL 4 SO4 O4 S 2- FORMUL 5 HOH *262(H2 O) HELIX 1 AA1 SER A 6 ARG A 11 1 6 HELIX 2 AA2 HIS A 14 ALA A 20 1 7 HELIX 3 AA3 ARG A 45 SER A 47 5 3 HELIX 4 AA4 ALA A 48 GLY A 59 1 12 HELIX 5 AA5 LEU A 75 GLY A 79 5 5 HELIX 6 AA6 SER A 100 ASP A 108 1 9 HELIX 7 AA7 ASP A 108 ALA A 114 1 7 HELIX 8 AA8 LEU A 115 GLY A 129 1 15 HELIX 9 AA9 ASP A 160 TYR A 165 1 6 HELIX 10 AB1 GLY A 169 ASN A 184 1 16 HELIX 11 AB2 HIS A 194 GLU A 199 1 6 HELIX 12 AB3 SER A 223 ARG A 229 1 7 HELIX 13 AB4 GLN A 240 ALA A 248 1 9 HELIX 14 AB5 GLN A 272 GLY A 281 1 10 HELIX 15 AB6 THR A 284 ARG A 295 1 12 HELIX 16 AB7 ASP A 309 ARG A 322 1 14 SHEET 1 AA1 7 CYS A 23 LYS A 25 0 SHEET 2 AA1 7 ILE A 2 ILE A 4 1 N ILE A 4 O GLN A 24 SHEET 3 AA1 7 ALA A 38 TRP A 42 1 O ALA A 38 N GLY A 3 SHEET 4 AA1 7 VAL A 62 ASP A 67 1 O ILE A 63 N ILE A 39 SHEET 5 AA1 7 SER A 84 ASP A 88 -1 O ASP A 88 N ARG A 64 SHEET 6 AA1 7 CYS A 297 ILE A 300 -1 O ARG A 298 N LEU A 85 SHEET 7 AA1 7 VAL A 307 SER A 308 -1 O SER A 308 N TYR A 299 SHEET 1 AA2 6 VAL A 215 ILE A 218 0 SHEET 2 AA2 6 GLU A 188 LYS A 192 1 N ILE A 189 O ARG A 216 SHEET 3 AA2 6 ILE A 150 VAL A 154 1 N VAL A 151 O TRP A 190 SHEET 4 AA2 6 ARG A 233 VAL A 236 1 O TYR A 235 N LEU A 152 SHEET 5 AA2 6 VAL A 252 CYS A 254 1 O THR A 253 N VAL A 234 SHEET 6 AA2 6 ASP A 267 ASP A 268 1 O ASP A 267 N VAL A 252 SITE 1 AC1 20 SER A 132 LYS A 133 TYR A 134 VAL A 154 SITE 2 AC1 20 ASP A 155 GLN A 156 LYS A 192 VAL A 193 SITE 3 AC1 20 HIS A 194 PRO A 195 PRO A 224 SER A 239 SITE 4 AC1 20 GLN A 240 TYR A 241 GLU A 244 HOH A 516 SITE 5 AC1 20 HOH A 518 HOH A 524 HOH A 542 HOH A 554 SITE 1 AC2 5 TRP A 42 SER A 47 ALA A 48 HOH A 538 SITE 2 AC2 5 HOH A 707 SITE 1 AC3 7 SER A 6 ARG A 45 SER A 47 HOH A 502 SITE 2 AC3 7 HOH A 538 HOH A 576 HOH A 664 CRYST1 58.220 64.580 77.590 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017176 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012888 0.00000