HEADER LIPID TRANSPORT 13-SEP-18 6MGF TITLE UNTAGGED, WILD-TYPE LPTB IN COMPLEX WITH ADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPOLYSACCHARIDE EXPORT SYSTEM ATP-BINDING PROTEIN LPTB; COMPND 3 CHAIN: A; COMPND 4 EC: 3.6.3.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: LPTB, YHBG, B3201, JW3168; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LPTB, LIPOPOLYSACCHARIDE, LPS TRANSPORT, ABC-TRANSPORTER, ATP-BINDING KEYWDS 2 CASSETTE, LIPID TRANSPORT, ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR M.D.MANDLER,T.W.OWENS,N.RUIZ,D.KAHNE REVDAT 3 11-OCT-23 6MGF 1 COMPND JRNL HETNAM REVDAT 2 18-DEC-19 6MGF 1 REMARK REVDAT 1 18-SEP-19 6MGF 0 JRNL AUTH B.SIMPSON,N.RUIZ JRNL TITL BYPASSING THE REQUIREMENT FOR COUPLING OF ATP BINDING AND JRNL TITL 2 HYDROLYSIS IN THE LIPOPOLYSACCHARIDE ABC TRANSPORTE JRNL REF NOT PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 4566 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 456 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.9412 - 4.3004 1.00 1426 157 0.1787 0.2043 REMARK 3 2 4.3004 - 3.4134 1.00 1381 154 0.1933 0.2363 REMARK 3 3 3.4134 - 2.9820 0.94 1303 145 0.2592 0.3027 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1254 -15.4477 11.4450 REMARK 3 T TENSOR REMARK 3 T11: 0.2765 T22: 0.2470 REMARK 3 T33: 0.2289 T12: -0.0476 REMARK 3 T13: -0.0446 T23: 0.0382 REMARK 3 L TENSOR REMARK 3 L11: 5.5757 L22: 4.3663 REMARK 3 L33: 4.5369 L12: -0.6777 REMARK 3 L13: -0.7889 L23: 1.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.1217 S12: 0.2668 S13: 0.1388 REMARK 3 S21: -0.0253 S22: -0.0371 S23: 0.5758 REMARK 3 S31: -0.3809 S32: -0.4204 S33: -0.2620 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9044 -14.4029 14.4117 REMARK 3 T TENSOR REMARK 3 T11: 0.2229 T22: 0.2708 REMARK 3 T33: 0.2492 T12: -0.0639 REMARK 3 T13: 0.0236 T23: 0.0676 REMARK 3 L TENSOR REMARK 3 L11: 1.5678 L22: 1.4983 REMARK 3 L33: 3.0977 L12: -1.2699 REMARK 3 L13: 0.8080 L23: 0.1505 REMARK 3 S TENSOR REMARK 3 S11: -0.1593 S12: 0.0628 S13: -0.2891 REMARK 3 S21: 0.3179 S22: 0.0158 S23: 0.2033 REMARK 3 S31: 0.0135 S32: -0.3146 S33: 0.1088 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6001 -25.7755 19.3733 REMARK 3 T TENSOR REMARK 3 T11: 0.2840 T22: 0.3024 REMARK 3 T33: 0.3441 T12: -0.0500 REMARK 3 T13: 0.0741 T23: 0.0723 REMARK 3 L TENSOR REMARK 3 L11: 4.6215 L22: 2.4754 REMARK 3 L33: 3.4472 L12: 0.5079 REMARK 3 L13: -0.4856 L23: 0.8011 REMARK 3 S TENSOR REMARK 3 S11: 0.2012 S12: -0.5666 S13: -0.9478 REMARK 3 S21: 0.3167 S22: -0.4278 S23: -0.1797 REMARK 3 S31: 0.2658 S32: -0.1344 S33: 0.1953 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.0546 -20.6761 27.3085 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.6301 REMARK 3 T33: 0.4119 T12: -0.1262 REMARK 3 T13: -0.0206 T23: -0.0686 REMARK 3 L TENSOR REMARK 3 L11: 3.3428 L22: 2.1522 REMARK 3 L33: 5.0321 L12: -1.6130 REMARK 3 L13: 1.9931 L23: -0.9229 REMARK 3 S TENSOR REMARK 3 S11: 0.4228 S12: -0.1938 S13: -0.3572 REMARK 3 S21: -0.0593 S22: -0.2499 S23: 0.2645 REMARK 3 S31: 0.2358 S32: 0.5276 S33: -0.1812 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 124 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.9259 -27.8500 23.0562 REMARK 3 T TENSOR REMARK 3 T11: 0.6681 T22: 0.8034 REMARK 3 T33: 0.8896 T12: 0.3088 REMARK 3 T13: -0.0247 T23: -0.2577 REMARK 3 L TENSOR REMARK 3 L11: 5.7932 L22: 1.5530 REMARK 3 L33: 2.9070 L12: -1.4477 REMARK 3 L13: 1.5599 L23: 1.3262 REMARK 3 S TENSOR REMARK 3 S11: 0.4853 S12: 0.3027 S13: -0.4934 REMARK 3 S21: -0.1409 S22: 0.4602 S23: -0.8498 REMARK 3 S31: 1.2277 S32: 1.8296 S33: -0.5297 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 125 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0243 -13.4250 24.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.4225 T22: 0.9868 REMARK 3 T33: 0.3361 T12: -0.1778 REMARK 3 T13: -0.0238 T23: 0.0544 REMARK 3 L TENSOR REMARK 3 L11: 1.4371 L22: 3.6760 REMARK 3 L33: 6.2742 L12: -2.1325 REMARK 3 L13: 2.6879 L23: -3.2620 REMARK 3 S TENSOR REMARK 3 S11: -0.4154 S12: 0.4456 S13: 0.3966 REMARK 3 S21: 0.2129 S22: 0.0911 S23: -0.6408 REMARK 3 S31: -1.0582 S32: 0.7684 S33: 0.1530 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 140 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.2230 -14.8221 13.6394 REMARK 3 T TENSOR REMARK 3 T11: 0.2494 T22: 0.3727 REMARK 3 T33: 0.4098 T12: -0.0141 REMARK 3 T13: 0.0112 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 2.0471 L22: 1.8151 REMARK 3 L33: 4.0902 L12: 0.9230 REMARK 3 L13: 0.5918 L23: -1.9597 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: 0.0053 S13: -0.0163 REMARK 3 S21: 0.1570 S22: -0.2063 S23: -0.5303 REMARK 3 S31: -0.1932 S32: 0.7080 S33: 0.1798 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4445 -11.7612 4.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.2889 T22: 0.3963 REMARK 3 T33: 0.2419 T12: -0.0708 REMARK 3 T13: 0.0620 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 3.0345 L22: 3.5634 REMARK 3 L33: 2.9946 L12: -2.1611 REMARK 3 L13: 2.5390 L23: -0.4306 REMARK 3 S TENSOR REMARK 3 S11: 0.1078 S12: -0.2872 S13: 0.3026 REMARK 3 S21: 0.1023 S22: -0.1178 S23: -0.3850 REMARK 3 S31: -0.1689 S32: -0.0458 S33: -0.0293 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 212 THROUGH 227 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.4555 -9.7921 -1.9796 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.4132 REMARK 3 T33: 0.3200 T12: -0.0041 REMARK 3 T13: -0.0758 T23: 0.0703 REMARK 3 L TENSOR REMARK 3 L11: 2.7516 L22: 1.9023 REMARK 3 L33: 3.3850 L12: -1.4355 REMARK 3 L13: -1.9081 L23: 0.1643 REMARK 3 S TENSOR REMARK 3 S11: -0.0831 S12: 0.3802 S13: -0.3913 REMARK 3 S21: -0.1311 S22: -0.2137 S23: 0.2625 REMARK 3 S31: 0.0955 S32: -0.9484 S33: 0.1440 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 228 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.4207 1.2562 -3.6945 REMARK 3 T TENSOR REMARK 3 T11: 0.6525 T22: 0.4973 REMARK 3 T33: 0.4458 T12: 0.1494 REMARK 3 T13: -0.0975 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 9.8556 L22: 2.0429 REMARK 3 L33: 7.8602 L12: 4.4837 REMARK 3 L13: -8.7971 L23: -4.0039 REMARK 3 S TENSOR REMARK 3 S11: 1.3166 S12: -0.4249 S13: 1.2203 REMARK 3 S21: 0.8790 S22: -0.6763 S23: -0.2359 REMARK 3 S31: -1.0586 S32: 0.5720 S33: -0.0980 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MGF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.29 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 4568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.980 REMARK 200 RESOLUTION RANGE LOW (A) : 61.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.29400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 1.09300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.1 REMARK 200 STARTING MODEL: 6B8B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% W/V PEG 4000, 100MM MES PH 6.5, REMARK 280 1.3MM NOVOBIOCIN-ADAMANTYL, 7% DMSO, LIQUID DIFFUSION, REMARK 280 TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 51.37100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.38350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 51.37100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 17.38350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 91 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 237 CG CD OE1 OE2 REMARK 470 ASP A 238 CG OD1 OD2 REMARK 470 ARG A 240 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -125.36 57.02 REMARK 500 PRO A 71 -179.86 -69.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 43 OG1 REMARK 620 2 ADP A 302 O3B 70.4 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CZJ A 303 DBREF 6MGF A 1 241 UNP P0A9V1 LPTB_ECOLI 1 241 SEQRES 1 A 241 MET ALA THR LEU THR ALA LYS ASN LEU ALA LYS ALA TYR SEQRES 2 A 241 LYS GLY ARG ARG VAL VAL GLU ASP VAL SER LEU THR VAL SEQRES 3 A 241 ASN SER GLY GLU ILE VAL GLY LEU LEU GLY PRO ASN GLY SEQRES 4 A 241 ALA GLY LYS THR THR THR PHE TYR MET VAL VAL GLY ILE SEQRES 5 A 241 VAL PRO ARG ASP ALA GLY ASN ILE ILE ILE ASP ASP ASP SEQRES 6 A 241 ASP ILE SER LEU LEU PRO LEU HIS ALA ARG ALA ARG ARG SEQRES 7 A 241 GLY ILE GLY TYR LEU PRO GLN GLU ALA SER ILE PHE ARG SEQRES 8 A 241 ARG LEU SER VAL TYR ASP ASN LEU MET ALA VAL LEU GLN SEQRES 9 A 241 ILE ARG ASP ASP LEU SER ALA GLU GLN ARG GLU ASP ARG SEQRES 10 A 241 ALA ASN GLU LEU MET GLU GLU PHE HIS ILE GLU HIS LEU SEQRES 11 A 241 ARG ASP SER MET GLY GLN SER LEU SER GLY GLY GLU ARG SEQRES 12 A 241 ARG ARG VAL GLU ILE ALA ARG ALA LEU ALA ALA ASN PRO SEQRES 13 A 241 LYS PHE ILE LEU LEU ASP GLU PRO PHE ALA GLY VAL ASP SEQRES 14 A 241 PRO ILE SER VAL ILE ASP ILE LYS ARG ILE ILE GLU HIS SEQRES 15 A 241 LEU ARG ASP SER GLY LEU GLY VAL LEU ILE THR ASP HIS SEQRES 16 A 241 ASN VAL ARG GLU THR LEU ALA VAL CYS GLU ARG ALA TYR SEQRES 17 A 241 ILE VAL SER GLN GLY HIS LEU ILE ALA HIS GLY THR PRO SEQRES 18 A 241 THR GLU ILE LEU GLN ASP GLU HIS VAL LYS ARG VAL TYR SEQRES 19 A 241 LEU GLY GLU ASP PHE ARG LEU HET MG A 301 1 HET ADP A 302 27 HET CZJ A 303 42 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM CZJ (3S,5S,7S)-N-{7-[(3-O-CARBAMOYL-6-DEOXY-5-METHYL-4-O- HETNAM 2 CZJ METHYL-BETA-D-GULOPYRANOSYL)OXY]-4-HYDROXY-8-METHYL-2- HETNAM 3 CZJ OXO-2H-1-BEN ZOPYRAN-3-YL}TRICYCLO[3.3.1.1~3, HETNAM 4 CZJ 7~]DECANE-1-CARBOXAMIDE HETSYN CZJ NOVOBIOCIN DERIVATIVE FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 CZJ C30 H38 N2 O10 FORMUL 5 HOH *8(H2 O) HELIX 1 AA1 GLY A 41 GLY A 51 1 11 HELIX 2 AA2 PRO A 71 ARG A 77 1 7 HELIX 3 AA3 SER A 94 GLN A 104 1 11 HELIX 4 AA4 SER A 110 PHE A 125 1 16 HELIX 5 AA5 ILE A 127 ARG A 131 5 5 HELIX 6 AA6 MET A 134 LEU A 138 5 5 HELIX 7 AA7 SER A 139 ALA A 153 1 15 HELIX 8 AA8 ASP A 169 SER A 186 1 18 HELIX 9 AA9 ASN A 196 LEU A 201 1 6 HELIX 10 AB1 ALA A 202 CYS A 204 5 3 HELIX 11 AB2 THR A 220 LEU A 225 1 6 HELIX 12 AB3 ASP A 227 GLY A 236 1 10 SHEET 1 AA1 4 ARG A 16 ASN A 27 0 SHEET 2 AA1 4 THR A 3 TYR A 13 -1 N TYR A 13 O ARG A 16 SHEET 3 AA1 4 ALA A 57 ILE A 62 -1 O ILE A 61 N THR A 5 SHEET 4 AA1 4 ASP A 65 ASP A 66 -1 O ASP A 65 N ILE A 62 SHEET 1 AA2 6 ILE A 80 LEU A 83 0 SHEET 2 AA2 6 PHE A 158 LEU A 161 1 O PHE A 158 N GLY A 81 SHEET 3 AA2 6 GLY A 189 ASP A 194 1 O LEU A 191 N LEU A 161 SHEET 4 AA2 6 ILE A 31 LEU A 35 1 N LEU A 34 O ILE A 192 SHEET 5 AA2 6 ARG A 206 SER A 211 1 O VAL A 210 N LEU A 35 SHEET 6 AA2 6 HIS A 214 GLY A 219 -1 O HIS A 214 N SER A 211 LINK OG1 THR A 43 MG MG A 301 1555 1555 2.03 LINK MG MG A 301 O3B ADP A 302 1555 1555 2.40 SITE 1 AC1 4 THR A 43 GLN A 85 GLU A 163 ADP A 302 SITE 1 AC2 14 TYR A 13 ARG A 16 VAL A 18 ASN A 38 SITE 2 AC2 14 GLY A 39 ALA A 40 GLY A 41 LYS A 42 SITE 3 AC2 14 THR A 43 THR A 44 ASP A 65 ARG A 78 SITE 4 AC2 14 MG A 301 HOH A 401 SITE 1 AC3 9 PRO A 84 GLU A 86 ALA A 87 SER A 88 SITE 2 AC3 9 ARG A 92 LEU A 93 ALA A 101 VAL A 102 SITE 3 AC3 9 ARG A 150 CRYST1 102.742 34.767 62.897 90.00 100.07 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009733 0.000000 0.001729 0.00000 SCALE2 0.000000 0.028763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016148 0.00000