HEADER HYDROLASE 14-SEP-18 6MGL TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN FROM GH74 ENZYME POGH74 FROM TITLE 2 PAENIBACILLUS ODORIFER, D60A MUTANT IN COMPLEX WITH XXLG AND XGXXLG TITLE 3 XYLOGLUCAN COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOGLUCANASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PAENIBACILLUS ODORIFER; SOURCE 3 ORGANISM_TAXID: 189426; SOURCE 4 GENE: BSK60_29080; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV-LIC KEYWDS GLYCOSYLHYDROLASE, HYDROLASE, FAMILY GH74, XYLOGLUCANASE, KEYWDS 2 PAENIBACILLUS ODORIFER, XYLOGLUCAN EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,G.ARNAL,N.WATANABE,H.BRUMER,A.SAVCHENKO REVDAT 4 11-OCT-23 6MGL 1 HETSYN LINK REVDAT 3 29-JUL-20 6MGL 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE ATOM REVDAT 2 08-JAN-20 6MGL 1 REMARK REVDAT 1 23-JAN-19 6MGL 0 JRNL AUTH G.ARNAL,P.J.STOGIOS,J.ASOHAN,T.SKARINA,A.SAVCHENKO,H.BRUMER JRNL TITL STRUCTURAL ENZYMOLOGY REVEALS THE MOLECULAR BASIS OF JRNL TITL 2 SUBSTRATE REGIOSPECIFICITY AND PROCESSIVITY OF AN EXEMPLAR JRNL TITL 3 BACTERIAL GLYCOSIDE HYDROLASE FAMILY 74ENDO-XYLOGLUCANASE. JRNL REF BIOCHEM. J. V. 475 3963 2018 JRNL REFN ESSN 1470-8728 JRNL PMID 30463871 JRNL DOI 10.1042/BCJ20180763 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_3092: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 117296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 5836 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4285 - 4.6593 0.98 3935 199 0.1396 0.1596 REMARK 3 2 4.6593 - 3.6987 0.99 3800 211 0.1091 0.1304 REMARK 3 3 3.6987 - 3.2313 1.00 3813 171 0.1152 0.1455 REMARK 3 4 3.2313 - 2.9359 0.99 3768 190 0.1264 0.1599 REMARK 3 5 2.9359 - 2.7255 1.00 3757 214 0.1389 0.1540 REMARK 3 6 2.7255 - 2.5649 1.00 3736 181 0.1379 0.1726 REMARK 3 7 2.5649 - 2.4364 1.00 3757 205 0.1403 0.1689 REMARK 3 8 2.4364 - 2.3304 1.00 3732 202 0.1500 0.1843 REMARK 3 9 2.3304 - 2.2406 1.00 3741 203 0.1432 0.1648 REMARK 3 10 2.2406 - 2.1633 1.00 3702 204 0.1495 0.1764 REMARK 3 11 2.1633 - 2.0957 1.00 3741 182 0.1497 0.1900 REMARK 3 12 2.0957 - 2.0358 1.00 3687 213 0.1563 0.1658 REMARK 3 13 2.0358 - 1.9822 1.00 3720 192 0.1562 0.1959 REMARK 3 14 1.9822 - 1.9338 1.00 3714 189 0.1528 0.1850 REMARK 3 15 1.9338 - 1.8899 1.00 3720 219 0.1621 0.1930 REMARK 3 16 1.8899 - 1.8496 1.00 3678 203 0.1581 0.1881 REMARK 3 17 1.8496 - 1.8126 1.00 3685 208 0.1618 0.2224 REMARK 3 18 1.8126 - 1.7784 1.00 3705 201 0.1739 0.1912 REMARK 3 19 1.7784 - 1.7467 1.00 3710 187 0.1759 0.2071 REMARK 3 20 1.7467 - 1.7171 1.00 3719 206 0.1725 0.2408 REMARK 3 21 1.7171 - 1.6894 1.00 3667 192 0.1782 0.2103 REMARK 3 22 1.6894 - 1.6634 1.00 3762 174 0.1820 0.1934 REMARK 3 23 1.6634 - 1.6389 1.00 3666 183 0.1874 0.2305 REMARK 3 24 1.6389 - 1.6158 1.00 3712 184 0.1993 0.2329 REMARK 3 25 1.6158 - 1.5940 1.00 3692 184 0.2061 0.2364 REMARK 3 26 1.5940 - 1.5733 1.00 3679 197 0.2019 0.2298 REMARK 3 27 1.5733 - 1.5536 1.00 3710 198 0.2096 0.2287 REMARK 3 28 1.5536 - 1.5349 1.00 3684 178 0.2256 0.2707 REMARK 3 29 1.5349 - 1.5171 0.97 3607 182 0.2348 0.2578 REMARK 3 30 1.5171 - 1.5000 0.94 3461 184 0.2510 0.2719 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6147 REMARK 3 ANGLE : 1.098 8440 REMARK 3 CHIRALITY : 0.069 960 REMARK 3 PLANARITY : 0.007 1046 REMARK 3 DIHEDRAL : 13.898 2084 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID -1:468) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8248 1.6308 2.1011 REMARK 3 T TENSOR REMARK 3 T11: 0.0634 T22: 0.0944 REMARK 3 T33: 0.1015 T12: -0.0059 REMARK 3 T13: -0.0290 T23: 0.0070 REMARK 3 L TENSOR REMARK 3 L11: 0.4300 L22: 1.3420 REMARK 3 L33: 1.0683 L12: -0.0138 REMARK 3 L13: -0.1444 L23: -0.8082 REMARK 3 S TENSOR REMARK 3 S11: 0.0027 S12: 0.0189 S13: 0.0596 REMARK 3 S21: 0.0594 S22: -0.1003 S23: -0.1744 REMARK 3 S31: -0.0608 S32: 0.1002 S33: 0.0522 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 469:614) REMARK 3 ORIGIN FOR THE GROUP (A): -23.5212 -20.5638 29.9289 REMARK 3 T TENSOR REMARK 3 T11: 0.0854 T22: 0.1236 REMARK 3 T33: 0.0951 T12: -0.0092 REMARK 3 T13: 0.0083 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 1.4984 L22: 1.5162 REMARK 3 L33: 2.9376 L12: -0.4283 REMARK 3 L13: -0.2765 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0619 S12: -0.1395 S13: 0.1177 REMARK 3 S21: 0.0649 S22: 0.1294 S23: -0.0512 REMARK 3 S31: 0.1320 S32: -0.0348 S33: -0.0569 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 615:745) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0720 -29.3169 20.3991 REMARK 3 T TENSOR REMARK 3 T11: 0.2242 T22: 0.1409 REMARK 3 T33: 0.1253 T12: 0.0785 REMARK 3 T13: 0.0176 T23: 0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.3713 L22: 0.9678 REMARK 3 L33: 1.3616 L12: -0.3964 REMARK 3 L13: -0.4423 L23: -0.5251 REMARK 3 S TENSOR REMARK 3 S11: -0.1638 S12: -0.2087 S13: 0.0089 REMARK 3 S21: -0.0414 S22: -0.0163 S23: -0.1825 REMARK 3 S31: 0.4360 S32: 0.2722 S33: 0.1132 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MGL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117368 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 46.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2CN3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 0.2 M MAGNESIUM REMARK 280 CHLORIDE, 25% PEG33530, XYLOGLUCAN MIXTURE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.58500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.34450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.42000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.34450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.58500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.42000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 31.71 -97.76 REMARK 500 ASN A 89 -163.10 -100.16 REMARK 500 SER A 214 96.89 -166.08 REMARK 500 ASP A 261 -156.70 -108.71 REMARK 500 LEU A 310 89.81 -156.68 REMARK 500 TRP A 313 -26.67 70.07 REMARK 500 ALA A 352 73.07 -155.43 REMARK 500 ASN A 383 98.46 -161.54 REMARK 500 ASP A 443 -40.71 69.75 REMARK 500 SER A 445 -52.26 71.29 REMARK 500 GLU A 450 -89.90 -110.83 REMARK 500 ASN A 517 -159.17 -115.28 REMARK 500 HIS A 525 -150.52 52.81 REMARK 500 ASN A 608 24.02 -143.11 REMARK 500 ASN A 707 -169.27 -105.38 REMARK 500 ALA A 714 -133.49 65.75 REMARK 500 ASN A 735 74.62 -114.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2283 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A2284 DISTANCE = 5.91 ANGSTROMS REMARK 525 HOH A2285 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A2286 DISTANCE = 6.11 ANGSTROMS REMARK 525 HOH A2287 DISTANCE = 6.13 ANGSTROMS REMARK 525 HOH A2288 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A2289 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2290 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A2291 DISTANCE = 6.39 ANGSTROMS REMARK 525 HOH A2292 DISTANCE = 6.42 ANGSTROMS REMARK 525 HOH A2293 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH A2294 DISTANCE = 6.49 ANGSTROMS REMARK 525 HOH A2295 DISTANCE = 6.58 ANGSTROMS REMARK 525 HOH A2296 DISTANCE = 6.71 ANGSTROMS REMARK 525 HOH A2297 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH A2298 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A2299 DISTANCE = 7.06 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PE3 A 825 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 824 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ILE A 21 O REMARK 620 2 ASP A 376 OD1 129.6 REMARK 620 3 ASP A 376 OD2 78.4 52.5 REMARK 620 4 GLU A 378 OE2 89.6 87.9 99.2 REMARK 620 5 HOH A 993 O 95.8 88.9 82.3 174.6 REMARK 620 6 HOH A1679 O 75.9 154.3 149.9 96.2 84.8 REMARK 620 7 HOH A1724 O 155.8 74.0 125.8 86.0 89.0 80.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 822 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 356 OD2 REMARK 620 2 HOH A1110 O 83.4 REMARK 620 3 HOH A1298 O 94.1 95.1 REMARK 620 4 HOH A1480 O 90.7 94.0 170.1 REMARK 620 5 HOH A1788 O 102.5 173.1 80.9 89.7 REMARK 620 6 HOH A1831 O 170.3 87.2 89.1 87.6 87.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 823 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A1405 O REMARK 620 2 HOH A1678 O 79.1 REMARK 620 3 HOH A1709 O 168.3 89.3 REMARK 620 4 HOH A1714 O 100.4 179.5 91.1 REMARK 620 5 HOH A2178 O 83.7 90.1 98.3 90.1 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6MGK RELATED DB: PDB REMARK 900 RELATED ID: 6MGJ RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF XYLOGLUCANASE IS FROM GENBANK: AIQ73809 DBREF1 6MGL A 1 745 UNP A0A1R0YRH0_9BACL DBREF2 6MGL A A0A1R0YRH0 35 779 SEQADV 6MGL GLY A -1 UNP A0A1R0YRH EXPRESSION TAG SEQADV 6MGL MET A 0 UNP A0A1R0YRH EXPRESSION TAG SEQADV 6MGL ALA A 36 UNP A0A1R0YRH ASP 70 ENGINEERED MUTATION SEQADV 6MGL GLY A 600 UNP A0A1R0YRH ALA 634 VARIANT SEQADV 6MGL SER A 680 UNP A0A1R0YRH ALA 714 VARIANT SEQRES 1 A 747 GLY MET SER GLU PRO TYR THR TRP LYS SER VAL VAL THR SEQRES 2 A 747 GLY ALA GLY GLY GLY PHE VAL PRO GLY ILE ILE PHE ASN SEQRES 3 A 747 GLN THR GLU PRO ASN LEU ILE TYR ALA ARG THR ALA ILE SEQRES 4 A 747 GLY GLY ALA TYR ARG TRP ASN GLN ALA THR SER SER TRP SEQRES 5 A 747 VAL SER ILE SER ASP SER VAL GLY TRP VAL ASP TRP ASN SEQRES 6 A 747 LYS ASN GLY VAL ASP ALA LEU ALA THR ASP PRO ILE ASP SEQRES 7 A 747 PRO ASN LYS VAL TYR MET ALA THR GLY THR TYR THR ASN SEQRES 8 A 747 HIS TRP ASP ASN ASN GLY GLN ILE MET ARG SER ASN ASP SEQRES 9 A 747 ARG GLY ASN THR TRP GLN THR THR PRO LEU PRO PHE LYS SEQRES 10 A 747 VAL GLY GLY ASN MET PRO GLY ARG SER ALA GLY GLU ARG SEQRES 11 A 747 LEU VAL ILE ASP PRO ASN LYS ASN ASN ILE LEU TYR PHE SEQRES 12 A 747 GLY ALA ARG SER GLY ASN GLY LEU TRP LYS SER ILE ASP SEQRES 13 A 747 SER GLY VAL THR TRP SER LYS VAL THR SER PHE PRO ASN SEQRES 14 A 747 VAL GLY THR TYR ILE GLN ASN PRO THR LEU ASP TYR GLY SEQRES 15 A 747 ASN ASP LEU VAL GLY LEU SER TRP ILE THR PHE ASP LYS SEQRES 16 A 747 SER THR GLY THR LEU GLY ASN ALA THR GLN THR ILE TYR SEQRES 17 A 747 VAL GLY VAL ALA ASP THR ALA SER SER VAL TYR ARG SER SEQRES 18 A 747 THR ASP GLY GLY VAL THR TRP THR ALA LEU ALA GLY GLN SEQRES 19 A 747 PRO THR GLY PHE LEU PRO HIS HIS GLY GLU LEU SER SER SEQRES 20 A 747 THR GLY ASP LEU TYR ILE THR TYR SER ASN GLY VAL GLY SEQRES 21 A 747 PRO TYR ASP GLY SER LYS GLY GLU VAL TRP LYS TYR ASN SEQRES 22 A 747 LYS THR SER GLY ALA TRP THR ASN ILE SER PRO THR THR SEQRES 23 A 747 GLY THR ASP ASN TRP TYR GLY PHE GLY GLY LEU ALA LEU SEQRES 24 A 747 ASP ALA GLN HIS PRO ASN THR LEU MET VAL SER SER LEU SEQRES 25 A 747 ASN ALA TRP TRP PRO ASP GLU VAL ILE PHE ARG SER THR SEQRES 26 A 747 ASN GLY GLY ALA THR TRP SER ARG ILE TRP ASP TRP GLY SEQRES 27 A 747 ASN TYR PRO GLU ARG THR TYR LYS PHE SER MET ASP ILE SEQRES 28 A 747 THR ALA ALA PRO TRP LEU ASP HIS GLY THR THR SER THR SEQRES 29 A 747 SER LEU ASP PRO SER PRO LYS LEU GLY TRP MET MET GLY SEQRES 30 A 747 ASP LEU GLU ILE ASP PRO PHE ASN SER ASN ARG MET MET SEQRES 31 A 747 TYR GLY THR GLY ALA THR ILE TYR GLY SER ASN ASN LEU SEQRES 32 A 747 THR SER TRP ASP THR GLY GLY LYS VAL ASN ILE SER VAL SEQRES 33 A 747 MET ALA LYS GLY VAL GLU GLU THR ALA VAL LEU GLY LEU SEQRES 34 A 747 ILE SER PRO PRO THR GLY THR SER HIS LEU ILE THR ALA SEQRES 35 A 747 LEU GLY ASP VAL SER GLY PHE ARG HIS GLU ASP LEU SER SEQRES 36 A 747 VAL ALA PRO THR LYS PHE GLN THR SER PRO SER TRP ALA SEQRES 37 A 747 THR THR MET SER ILE ASP TYR ALA GLU LEU SER PRO SER SEQRES 38 A 747 TYR MET VAL ARG VAL GLY SER ALA ASP LYS GLU LYS THR SEQRES 39 A 747 PRO SER MET LYS SER ILE GLY ILE SER ASN ASP GLY GLY SEQRES 40 A 747 VAL ASN TRP TYR MET PRO ASN SER GLU PRO SER ASN GLY SEQRES 41 A 747 THR LYS THR THR VAL GLY HIS GLY GLN VAL ALA VAL SER SEQRES 42 A 747 ALA SER GLY ASN SER ILE LEU TRP SER THR SER ASP ILE SEQRES 43 A 747 GLY VAL TYR TYR SER LYS THR SER GLY ASN SER TRP THR SEQRES 44 A 747 ALA SER ALA GLY LEU PRO ALA GLY ALA LYS ILE ALA SER SEQRES 45 A 747 ASP ARG VAL ASN PRO ASN LYS TYR TYR GLY PHE TYR ALA SEQRES 46 A 747 GLY THR PHE TYR VAL SER VAL ASP GLY GLY ALA THR PHE SEQRES 47 A 747 THR ALA THR GLY ALA SER GLY PHE PRO THR ASN ASN VAL SEQRES 48 A 747 ALA GLY LEU GLN PRO ASN GLU ALA GLN ILE SER MET LYS SEQRES 49 A 747 ALA VAL PRO GLY ILE GLU GLY ASP ILE TRP PHE ALA GLY SEQRES 50 A 747 GLY ASN THR VAL GLU ASN LYS TYR GLY LEU TRP HIS SER SEQRES 51 A 747 THR ASN SER GLY ALA SER PHE THR LYS LEU THR ASN VAL SEQRES 52 A 747 GLU GLU ALA ASP LEU ILE GLY TYR GLY LYS ALA ALA PRO SEQRES 53 A 747 GLY GLN THR TYR MET SER LEU TYR THR VAL ALA LYS ILE SEQRES 54 A 747 ASP GLY VAL ARG GLY VAL PHE ARG SER ASP ASP VAL GLY SEQRES 55 A 747 ALA THR TRP VAL ARG ILE ASN ASP ASP ALA HIS GLN TYR SEQRES 56 A 747 ALA LYS ILE ASN MET ALA ILE THR GLY ASP PRO ARG ILE SEQRES 57 A 747 TYR GLY ARG VAL TYR LEU GLY THR ASN GLY ARG GLY THR SEQRES 58 A 747 LEU TYR ALA ASP PRO VAL HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET XYS B 5 9 HET XYS B 6 9 HET XYS B 7 9 HET GAL B 8 11 HET BGC C 1 12 HET BGC C 2 11 HET BGC C 3 11 HET BGC C 4 11 HET BGC C 5 11 HET BGC C 6 11 HET XYS C 7 9 HET XYS C 8 9 HET XYS C 9 9 HET XYS C 10 9 HET GAL C 11 11 HET CL A 820 1 HET CL A 821 1 HET MG A 822 1 HET MG A 823 1 HET MG A 824 1 HET PE3 A 825 12 HET GOL A 826 6 HET GOL A 827 6 HET GOL A 828 6 HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM XYS ALPHA-D-XYLOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM CL CHLORIDE ION HETNAM MG MAGNESIUM ION HETNAM PE3 3,6,9,12,15,18,21,24,27,30,33,36,39- HETNAM 2 PE3 TRIDECAOXAHENTETRACONTANE-1,41-DIOL HETNAM GOL GLYCEROL HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN XYS ALPHA-D-XYLOSE; D-XYLOSE; XYLOSE; XYLOPYRANOSE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN PE3 POLYETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 BGC 10(C6 H12 O6) FORMUL 2 XYS 7(C5 H10 O5) FORMUL 2 GAL 2(C6 H12 O6) FORMUL 4 CL 2(CL 1-) FORMUL 6 MG 3(MG 2+) FORMUL 9 PE3 C28 H58 O15 FORMUL 10 GOL 3(C3 H8 O3) FORMUL 13 HOH *1399(H2 O) HELIX 1 AA1 ASP A 61 ASN A 65 5 5 HELIX 2 AA2 LYS A 193 GLY A 196 5 4 HELIX 3 AA3 THR A 284 ASN A 288 5 5 HELIX 4 AA4 ALA A 352 HIS A 357 5 6 HELIX 5 AA5 ASN A 400 GLY A 407 5 8 HELIX 6 AA6 GLN A 613 ALA A 617 5 5 SHEET 1 AA1 4 TYR A 4 SER A 8 0 SHEET 2 AA1 4 THR A 739 PRO A 744 -1 O ASP A 743 N THR A 5 SHEET 3 AA1 4 ILE A 726 GLY A 733 -1 N LEU A 732 O LEU A 740 SHEET 4 AA1 4 ILE A 720 ASP A 723 -1 N THR A 721 O TYR A 731 SHEET 1 AA2 4 GLY A 20 PHE A 23 0 SHEET 2 AA2 4 ILE A 31 ARG A 34 -1 O TYR A 32 N ILE A 22 SHEET 3 AA2 4 ALA A 40 ASN A 44 -1 O TRP A 43 N ILE A 31 SHEET 4 AA2 4 SER A 49 SER A 52 -1 O SER A 49 N ASN A 44 SHEET 1 AA3 4 VAL A 67 THR A 72 0 SHEET 2 AA3 4 VAL A 80 THR A 84 -1 O TYR A 81 N ALA A 71 SHEET 3 AA3 4 GLN A 96 SER A 100 -1 O MET A 98 N MET A 82 SHEET 4 AA3 4 GLN A 108 PRO A 111 -1 O GLN A 108 N ARG A 99 SHEET 1 AA4 4 LEU A 129 ILE A 131 0 SHEET 2 AA4 4 LEU A 139 GLY A 142 -1 O TYR A 140 N VAL A 130 SHEET 3 AA4 4 LEU A 149 SER A 152 -1 O TRP A 150 N PHE A 141 SHEET 4 AA4 4 SER A 160 LYS A 161 -1 O SER A 160 N LYS A 151 SHEET 1 AA5 4 LEU A 186 PHE A 191 0 SHEET 2 AA5 4 ILE A 205 VAL A 209 -1 O TYR A 206 N THR A 190 SHEET 3 AA5 4 VAL A 216 SER A 219 -1 O TYR A 217 N VAL A 207 SHEET 4 AA5 4 THR A 227 ALA A 228 -1 O THR A 227 N ARG A 218 SHEET 1 AA6 4 LEU A 237 LEU A 243 0 SHEET 2 AA6 4 ASP A 248 SER A 254 -1 O TYR A 250 N GLU A 242 SHEET 3 AA6 4 GLY A 265 ASN A 271 -1 O TYR A 270 N LEU A 249 SHEET 4 AA6 4 TRP A 277 ASN A 279 -1 O THR A 278 N LYS A 269 SHEET 1 AA7 4 GLY A 291 LEU A 297 0 SHEET 2 AA7 4 LEU A 305 LEU A 310 -1 O MET A 306 N ALA A 296 SHEET 3 AA7 4 ILE A 319 SER A 322 -1 O SER A 322 N LEU A 305 SHEET 4 AA7 4 SER A 330 ARG A 331 -1 O SER A 330 N ARG A 321 SHEET 1 AA8 2 TRP A 333 TRP A 335 0 SHEET 2 AA8 2 ARG A 341 TYR A 343 -1 O THR A 342 N ASP A 334 SHEET 1 AA9 5 PHE A 345 ASP A 348 0 SHEET 2 AA9 5 VAL A 410 VAL A 414 1 O ILE A 412 N SER A 346 SHEET 3 AA9 5 ILE A 395 SER A 398 -1 N GLY A 397 O SER A 413 SHEET 4 AA9 5 MET A 387 GLY A 390 -1 N TYR A 389 O TYR A 396 SHEET 5 AA9 5 LEU A 377 ILE A 379 -1 N GLU A 378 O MET A 388 SHEET 1 AB1 3 VAL A 424 ILE A 428 0 SHEET 2 AB1 3 LEU A 437 LEU A 441 -1 O ILE A 438 N ILE A 428 SHEET 3 AB1 3 ARG A 448 HIS A 449 -1 O HIS A 449 N LEU A 437 SHEET 1 AB2 3 THR A 468 ALA A 474 0 SHEET 2 AB2 3 SER A 477 GLY A 485 -1 O TYR A 480 N ALA A 474 SHEET 3 AB2 3 ILE A 498 SER A 501 -1 O GLY A 499 N ARG A 483 SHEET 1 AB3 4 GLN A 527 VAL A 530 0 SHEET 2 AB3 4 ILE A 537 SER A 540 -1 O LEU A 538 N ALA A 529 SHEET 3 AB3 4 VAL A 546 SER A 549 -1 O TYR A 547 N TRP A 539 SHEET 4 AB3 4 THR A 557 ALA A 558 -1 O THR A 557 N TYR A 548 SHEET 1 AB4 4 LYS A 567 SER A 570 0 SHEET 2 AB4 4 TYR A 578 TYR A 582 -1 O TYR A 579 N ALA A 569 SHEET 3 AB4 4 THR A 585 SER A 589 -1 O TYR A 587 N GLY A 580 SHEET 4 AB4 4 THR A 597 ALA A 598 -1 O THR A 597 N VAL A 588 SHEET 1 AB5 4 ILE A 619 ALA A 623 0 SHEET 2 AB5 4 ILE A 631 ASN A 637 -1 O ALA A 634 N SER A 620 SHEET 3 AB5 4 LYS A 642 SER A 648 -1 O TRP A 646 N PHE A 633 SHEET 4 AB5 4 THR A 656 LYS A 657 -1 O THR A 656 N HIS A 647 SHEET 1 AB6 4 GLU A 663 GLY A 670 0 SHEET 2 AB6 4 SER A 680 ILE A 687 -1 O VAL A 684 N ASP A 665 SHEET 3 AB6 4 VAL A 690 SER A 696 -1 O PHE A 694 N THR A 683 SHEET 4 AB6 4 VAL A 704 ARG A 705 -1 O VAL A 704 N ARG A 695 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.42 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.43 LINK O6 BGC B 2 C1 XYS B 7 1555 1555 1.43 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.46 LINK O6 BGC B 3 C1 XYS B 6 1555 1555 1.44 LINK O6 BGC B 4 C1 XYS B 5 1555 1555 1.43 LINK O2 XYS B 7 C1 GAL B 8 1555 1555 1.42 LINK O4 BGC C 1 C1 BGC C 2 1555 1555 1.42 LINK O4 BGC C 2 C1 BGC C 3 1555 1555 1.43 LINK O6 BGC C 2 C1 XYS C 10 1555 1555 1.45 LINK O4 BGC C 3 C1 BGC C 4 1555 1555 1.42 LINK O6 BGC C 3 C1 XYS C 9 1555 1555 1.44 LINK O4 BGC C 4 C1 BGC C 5 1555 1555 1.42 LINK O6 BGC C 4 C1 XYS C 8 1555 1555 1.41 LINK O4 BGC C 5 C1 BGC C 6 1555 1555 1.40 LINK O6 BGC C 6 C1 XYS C 7 1555 1555 1.43 LINK O2 XYS C 10 C1 GAL C 11 1555 1555 1.43 LINK O ILE A 21 MG MG A 824 1555 1555 2.57 LINK OD2 ASP A 356 MG MG A 822 1555 1555 1.96 LINK OD1 ASP A 376 MG MG A 824 1555 1555 2.62 LINK OD2 ASP A 376 MG MG A 824 1555 1555 2.18 LINK OE2 GLU A 378 MG MG A 824 1555 1555 2.09 LINK MG MG A 822 O HOH A1110 1555 1555 2.08 LINK MG MG A 822 O HOH A1298 1555 1555 2.18 LINK MG MG A 822 O HOH A1480 1555 1555 2.07 LINK MG MG A 822 O HOH A1788 1555 1555 2.12 LINK MG MG A 822 O HOH A1831 1555 4445 2.12 LINK MG MG A 823 O HOH A1405 1555 1555 2.34 LINK MG MG A 823 O HOH A1678 1555 1555 2.02 LINK MG MG A 823 O HOH A1709 1555 1555 2.07 LINK MG MG A 823 O HOH A1714 1555 1555 2.01 LINK MG MG A 823 O HOH A2178 1555 1555 2.21 LINK MG MG A 824 O HOH A 993 1555 1555 2.28 LINK MG MG A 824 O HOH A1679 1555 1555 2.30 LINK MG MG A 824 O HOH A1724 1555 1555 2.45 CISPEP 1 GLY A 126 GLU A 127 0 -1.79 CISPEP 2 GLY A 258 PRO A 259 0 11.31 CISPEP 3 LEU A 310 ASN A 311 0 -3.03 CISPEP 4 TRP A 314 PRO A 315 0 -10.94 CISPEP 5 TYR A 338 PRO A 339 0 5.71 CISPEP 6 SER A 367 PRO A 368 0 -3.61 CISPEP 7 SER A 462 PRO A 463 0 12.92 CRYST1 61.170 100.840 118.689 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016348 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009917 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008425 0.00000