HEADER HYDROLASE 16-SEP-18 6MH0 TITLE CRYSTAL STRUCTURE OF THE NEW DELI METALLO BETA LACTAMASE VARIANT 3 TITLE 2 FROM KLEBSIELLA PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE NDM-3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: NDM-3 METALLO-BETA-LACTAMASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: NDM-3, BLANDM-3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VARIANT: GOLD; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS METALLO BETA LACTAMASE, CARBAPENEMASES, STRUCTURAL GENOMICS, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,C.TESAR,R.JEDRZEJCZAK,G.BABNIGG,A.JOACHIMIAK,CENTER FOR AUTHOR 2 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 13-MAR-24 6MH0 1 LINK REVDAT 2 18-DEC-19 6MH0 1 REMARK REVDAT 1 03-OCT-18 6MH0 0 JRNL AUTH Y.KIM,C.TESAR,R.JEDRZEJCZAK,G.BABNIGG,A.JOACHIMIAK, JRNL AUTH 2 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 3 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE NEW DELI METALLO BETA LACTAMASE JRNL TITL 2 VARIANT 3 FROM KLEBSIELLA PNEUMONIAE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 49365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.5463 - 4.3100 1.00 2848 157 0.1594 0.1731 REMARK 3 2 4.3100 - 3.4217 1.00 2731 127 0.1461 0.1847 REMARK 3 3 3.4217 - 2.9894 1.00 2686 141 0.1691 0.2194 REMARK 3 4 2.9894 - 2.7162 1.00 2649 156 0.1811 0.1853 REMARK 3 5 2.7162 - 2.5215 1.00 2653 134 0.1758 0.2176 REMARK 3 6 2.5215 - 2.3729 1.00 2638 149 0.1702 0.2324 REMARK 3 7 2.3729 - 2.2541 1.00 2622 128 0.1644 0.1883 REMARK 3 8 2.2541 - 2.1559 1.00 2657 131 0.1560 0.1963 REMARK 3 9 2.1559 - 2.0730 1.00 2599 145 0.1646 0.2288 REMARK 3 10 2.0730 - 2.0014 1.00 2620 153 0.1672 0.1900 REMARK 3 11 2.0014 - 1.9389 1.00 2622 131 0.1705 0.2199 REMARK 3 12 1.9389 - 1.8834 1.00 2569 163 0.1654 0.2383 REMARK 3 13 1.8834 - 1.8339 1.00 2612 154 0.1710 0.2385 REMARK 3 14 1.8339 - 1.7891 1.00 2569 130 0.1763 0.2177 REMARK 3 15 1.7891 - 1.7484 1.00 2634 132 0.1875 0.2395 REMARK 3 16 1.7484 - 1.7112 1.00 2587 128 0.2084 0.2643 REMARK 3 17 1.7112 - 1.6770 0.99 2576 135 0.2298 0.2754 REMARK 3 18 1.6770 - 1.6454 0.77 1984 115 0.2477 0.2766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.910 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.39 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3540 REMARK 3 ANGLE : 0.750 4821 REMARK 3 CHIRALITY : 0.055 540 REMARK 3 PLANARITY : 0.005 636 REMARK 3 DIHEDRAL : 4.553 2450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7094 25.8154 14.8305 REMARK 3 T TENSOR REMARK 3 T11: 0.3021 T22: 0.2132 REMARK 3 T33: 0.4306 T12: -0.0673 REMARK 3 T13: -0.0325 T23: -0.0640 REMARK 3 L TENSOR REMARK 3 L11: 6.1477 L22: 4.1225 REMARK 3 L33: 6.3553 L12: -0.8675 REMARK 3 L13: -1.5340 L23: 0.5219 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.5984 S13: 0.9536 REMARK 3 S21: 0.5128 S22: -0.0153 S23: -0.2782 REMARK 3 S31: -0.8576 S32: 0.5447 S33: 0.0432 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 58 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9003 17.8869 13.4851 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.1219 REMARK 3 T33: 0.2389 T12: 0.0263 REMARK 3 T13: 0.0114 T23: -0.0324 REMARK 3 L TENSOR REMARK 3 L11: 2.3029 L22: 2.0538 REMARK 3 L33: 1.8750 L12: 0.1912 REMARK 3 L13: 0.0463 L23: -0.8812 REMARK 3 S TENSOR REMARK 3 S11: 0.0012 S12: -0.2257 S13: 0.4053 REMARK 3 S21: 0.1762 S22: 0.0284 S23: 0.1428 REMARK 3 S31: -0.1799 S32: -0.0660 S33: -0.0291 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5560 1.3239 11.3157 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1196 REMARK 3 T33: 0.1151 T12: -0.0103 REMARK 3 T13: -0.0196 T23: 0.0072 REMARK 3 L TENSOR REMARK 3 L11: 4.2320 L22: 3.3428 REMARK 3 L33: 0.9300 L12: -1.5845 REMARK 3 L13: -0.5451 L23: -0.4392 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: -0.0191 S13: 0.0356 REMARK 3 S21: 0.1299 S22: 0.0095 S23: 0.2010 REMARK 3 S31: -0.0772 S32: -0.0370 S33: 0.0096 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.5604 3.9891 14.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.1093 T22: 0.1280 REMARK 3 T33: 0.1482 T12: 0.0174 REMARK 3 T13: 0.0073 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 2.2885 L22: 2.0914 REMARK 3 L33: 3.0193 L12: 0.6257 REMARK 3 L13: 0.2713 L23: -0.7081 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.1772 S13: 0.1107 REMARK 3 S21: 0.0826 S22: -0.0283 S23: -0.0746 REMARK 3 S31: -0.0129 S32: -0.0286 S33: 0.0249 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 229 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.0445 4.4305 18.0970 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1532 REMARK 3 T33: 0.1455 T12: -0.0050 REMARK 3 T13: -0.0217 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 2.7348 L22: 3.9507 REMARK 3 L33: 1.8385 L12: 0.7551 REMARK 3 L13: -0.2263 L23: 0.0260 REMARK 3 S TENSOR REMARK 3 S11: 0.1226 S12: -0.1912 S13: -0.0189 REMARK 3 S21: 0.2378 S22: -0.1195 S23: -0.2394 REMARK 3 S31: -0.0966 S32: 0.0656 S33: 0.0026 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.6121 -40.3616 24.8776 REMARK 3 T TENSOR REMARK 3 T11: 0.5991 T22: 0.3812 REMARK 3 T33: 0.4064 T12: 0.0148 REMARK 3 T13: -0.0130 T23: 0.0322 REMARK 3 L TENSOR REMARK 3 L11: 3.6151 L22: 5.2724 REMARK 3 L33: 7.7069 L12: 2.9997 REMARK 3 L13: 4.0062 L23: 2.4728 REMARK 3 S TENSOR REMARK 3 S11: 0.5876 S12: -0.8381 S13: -0.1606 REMARK 3 S21: 0.9238 S22: 0.0155 S23: 0.4236 REMARK 3 S31: 1.0642 S32: -0.5214 S33: -0.6147 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 72 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2224 -33.5096 19.1724 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.1374 REMARK 3 T33: 0.1543 T12: -0.0283 REMARK 3 T13: -0.0014 T23: 0.0395 REMARK 3 L TENSOR REMARK 3 L11: 4.8213 L22: 4.2274 REMARK 3 L33: 4.6271 L12: 0.5037 REMARK 3 L13: 0.9523 L23: 1.0327 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.2117 S13: -0.2655 REMARK 3 S21: 0.4377 S22: -0.0894 S23: -0.1162 REMARK 3 S31: 0.2081 S32: 0.0766 S33: 0.0096 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 73 THROUGH 118 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0701 -32.1004 10.1579 REMARK 3 T TENSOR REMARK 3 T11: 0.1684 T22: 0.1288 REMARK 3 T33: 0.1223 T12: 0.0122 REMARK 3 T13: -0.0144 T23: 0.0087 REMARK 3 L TENSOR REMARK 3 L11: 2.1205 L22: 2.9306 REMARK 3 L33: 3.4260 L12: 0.2157 REMARK 3 L13: 0.3593 L23: 0.5488 REMARK 3 S TENSOR REMARK 3 S11: 0.0361 S12: 0.0340 S13: -0.1535 REMARK 3 S21: 0.0467 S22: -0.0971 S23: -0.0305 REMARK 3 S31: 0.2362 S32: 0.0542 S33: 0.0596 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 119 THROUGH 212 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4335 -17.4586 12.4067 REMARK 3 T TENSOR REMARK 3 T11: 0.1568 T22: 0.1553 REMARK 3 T33: 0.1378 T12: -0.0114 REMARK 3 T13: -0.0153 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 1.6256 L22: 1.4972 REMARK 3 L33: 1.0354 L12: -0.2278 REMARK 3 L13: -0.4784 L23: 0.1080 REMARK 3 S TENSOR REMARK 3 S11: -0.0061 S12: 0.0253 S13: -0.0699 REMARK 3 S21: -0.0166 S22: -0.0154 S23: -0.0509 REMARK 3 S31: 0.0614 S32: -0.0386 S33: 0.0184 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 213 THROUGH 269 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6362 -16.1414 26.7675 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.2390 REMARK 3 T33: 0.1481 T12: -0.0103 REMARK 3 T13: 0.0071 T23: 0.0210 REMARK 3 L TENSOR REMARK 3 L11: 1.9911 L22: 4.3015 REMARK 3 L33: 2.4471 L12: 0.9940 REMARK 3 L13: -0.7012 L23: -0.4514 REMARK 3 S TENSOR REMARK 3 S11: 0.1310 S12: -0.3378 S13: -0.0157 REMARK 3 S21: 0.5494 S22: -0.1664 S23: -0.0459 REMARK 3 S31: -0.0208 S32: -0.0393 S33: 0.0099 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236946. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49437 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 37.537 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.67100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NA/K PHOSPHATE PH6.2, 2.5 M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.59250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.39500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.34950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.39500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.59250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.34950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 28 REMARK 465 ASN A 29 REMARK 465 ALA A 30 REMARK 465 ILE A 31 REMARK 465 ARG A 32 REMARK 465 PRO A 33 REMARK 465 THR A 34 REMARK 465 ILE A 35 REMARK 465 GLY A 36 REMARK 465 GLN A 37 REMARK 465 GLN A 38 REMARK 465 GLY A 69 REMARK 465 PHE A 70 REMARK 465 ARG A 270 REMARK 465 SER B 28 REMARK 465 ASN B 29 REMARK 465 ALA B 30 REMARK 465 ILE B 31 REMARK 465 PRO B 68 REMARK 465 GLY B 69 REMARK 465 PHE B 70 REMARK 465 ARG B 270 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 90 144.77 69.30 REMARK 500 ASP B 90 143.91 72.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 120 NE2 REMARK 620 2 HIS A 122 ND1 102.9 REMARK 620 3 HIS A 189 NE2 101.7 110.5 REMARK 620 4 SO4 A 302 O2 109.2 110.7 120.0 REMARK 620 5 SO4 A 302 S 137.0 100.8 102.8 27.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 124 OD2 REMARK 620 2 CYS A 208 SG 97.4 REMARK 620 3 HIS A 250 NE2 97.8 115.2 REMARK 620 4 SO4 A 302 O2 78.7 96.9 147.8 REMARK 620 5 SO4 A 302 S 95.1 120.9 119.8 31.1 REMARK 620 6 SO4 A 302 O1 118.3 129.4 95.2 60.4 30.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 208 SG REMARK 620 2 HIS A 250 NE2 100.8 REMARK 620 3 SO4 A 302 O1 114.4 103.6 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 300 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 120 NE2 REMARK 620 2 HIS B 122 ND1 99.9 REMARK 620 3 HIS B 189 NE2 105.3 114.8 REMARK 620 4 SO4 B 302 O2 113.6 110.8 111.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 124 OD2 REMARK 620 2 CYS B 208 SG 100.7 REMARK 620 3 HIS B 250 NE2 95.5 122.8 REMARK 620 4 SO4 B 302 O3 103.8 134.1 92.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 208 SG REMARK 620 2 HIS B 250 NE2 109.1 REMARK 620 3 SO4 B 302 O3 121.7 97.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL B 306 DBREF 6MH0 A 31 270 UNP I3VKD5 I3VKD5_ECOLX 31 270 DBREF 6MH0 B 31 270 UNP I3VKD5 I3VKD5_ECOLX 31 270 SEQADV 6MH0 SER A 28 UNP I3VKD5 EXPRESSION TAG SEQADV 6MH0 ASN A 29 UNP I3VKD5 EXPRESSION TAG SEQADV 6MH0 ALA A 30 UNP I3VKD5 EXPRESSION TAG SEQADV 6MH0 SER B 28 UNP I3VKD5 EXPRESSION TAG SEQADV 6MH0 ASN B 29 UNP I3VKD5 EXPRESSION TAG SEQADV 6MH0 ALA B 30 UNP I3VKD5 EXPRESSION TAG SEQRES 1 A 243 SER ASN ALA ILE ARG PRO THR ILE GLY GLN GLN MET GLU SEQRES 2 A 243 THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN SEQRES 3 A 243 LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP SEQRES 4 A 243 MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE SEQRES 5 A 243 VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA SEQRES 6 A 243 TRP THR ASN ASP GLN THR ALA GLN ILE LEU ASN TRP ILE SEQRES 7 A 243 LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL SEQRES 8 A 243 THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA SEQRES 9 A 243 LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SEQRES 10 A 243 SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA SEQRES 11 A 243 GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU SEQRES 12 A 243 PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE SEQRES 13 A 243 TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL SEQRES 14 A 243 GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU SEQRES 15 A 243 ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY SEQRES 16 A 243 ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA SEQRES 17 A 243 PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SEQRES 18 A 243 SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS SEQRES 19 A 243 THR ALA ARG MET ALA ASP LYS LEU ARG SEQRES 1 B 243 SER ASN ALA ILE ARG PRO THR ILE GLY GLN GLN MET GLU SEQRES 2 B 243 THR GLY ASP GLN ARG PHE GLY ASP LEU VAL PHE ARG GLN SEQRES 3 B 243 LEU ALA PRO ASN VAL TRP GLN HIS THR SER TYR LEU ASP SEQRES 4 B 243 MET PRO GLY PHE GLY ALA VAL ALA SER ASN GLY LEU ILE SEQRES 5 B 243 VAL ARG ASP GLY GLY ARG VAL LEU VAL VAL ASP THR ALA SEQRES 6 B 243 TRP THR ASN ASP GLN THR ALA GLN ILE LEU ASN TRP ILE SEQRES 7 B 243 LYS GLN GLU ILE ASN LEU PRO VAL ALA LEU ALA VAL VAL SEQRES 8 B 243 THR HIS ALA HIS GLN ASP LYS MET GLY GLY MET ASP ALA SEQRES 9 B 243 LEU HIS ALA ALA GLY ILE ALA THR TYR ALA ASN ALA LEU SEQRES 10 B 243 SER ASN GLN LEU ALA PRO GLN GLU GLY MET VAL ALA ALA SEQRES 11 B 243 GLN HIS SER LEU THR PHE ALA ALA ASN GLY TRP VAL GLU SEQRES 12 B 243 PRO ALA THR ALA PRO ASN PHE GLY PRO LEU LYS VAL PHE SEQRES 13 B 243 TYR PRO GLY PRO GLY HIS THR SER ASP ASN ILE THR VAL SEQRES 14 B 243 GLY ILE ASP GLY THR ASP ILE ALA PHE GLY GLY CYS LEU SEQRES 15 B 243 ILE LYS ASP SER LYS ALA LYS SER LEU GLY ASN LEU GLY SEQRES 16 B 243 ASP ALA ASP THR GLU HIS TYR ALA ALA SER ALA ARG ALA SEQRES 17 B 243 PHE GLY ALA ALA PHE PRO LYS ALA SER MET ILE VAL MET SEQRES 18 B 243 SER HIS SER ALA PRO ASP SER ARG ALA ALA ILE THR HIS SEQRES 19 B 243 THR ALA ARG MET ALA ASP LYS LEU ARG HET ZN A 300 1 HET ZN A 301 2 HET SO4 A 302 5 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET CL A 306 1 HET ZN B 300 1 HET ZN B 301 2 HET SO4 B 302 5 HET CL B 303 1 HET CL B 304 1 HET CL B 305 1 HET CL B 306 1 HETNAM ZN ZINC ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 3 ZN 4(ZN 2+) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 CL 8(CL 1-) FORMUL 17 HOH *291(H2 O) HELIX 1 AA1 THR A 94 ILE A 109 1 16 HELIX 2 AA2 HIS A 122 GLY A 127 1 6 HELIX 3 AA3 GLY A 128 ALA A 135 1 8 HELIX 4 AA4 ALA A 143 ALA A 149 1 7 HELIX 5 AA5 PRO A 150 GLY A 153 5 4 HELIX 6 AA6 GLU A 170 ALA A 174 5 5 HELIX 7 AA7 HIS A 228 PHE A 240 1 13 HELIX 8 AA8 ARG A 256 LYS A 268 1 13 HELIX 9 AA9 PRO B 33 MET B 39 1 7 HELIX 10 AB1 THR B 94 ILE B 109 1 16 HELIX 11 AB2 HIS B 122 GLY B 127 1 6 HELIX 12 AB3 GLY B 128 ALA B 135 1 8 HELIX 13 AB4 ALA B 143 ALA B 149 1 7 HELIX 14 AB5 PRO B 150 GLY B 153 5 4 HELIX 15 AB6 GLU B 170 ALA B 174 5 5 HELIX 16 AB7 HIS B 228 PHE B 240 1 13 HELIX 17 AB8 ARG B 256 LYS B 268 1 13 SHEET 1 AA1 8 GLN A 44 PHE A 46 0 SHEET 2 AA1 8 LEU A 49 ALA A 55 -1 O LEU A 49 N PHE A 46 SHEET 3 AA1 8 VAL A 58 ASP A 66 -1 O GLN A 60 N ARG A 52 SHEET 4 AA1 8 ALA A 72 ASP A 82 -1 O ILE A 79 N TRP A 59 SHEET 5 AA1 8 ARG A 85 VAL A 89 -1 O VAL A 89 N LEU A 78 SHEET 6 AA1 8 VAL A 113 VAL A 117 1 O ALA A 114 N VAL A 86 SHEET 7 AA1 8 ALA A 138 ASN A 142 1 O TYR A 140 N ALA A 116 SHEET 8 AA1 8 HIS A 159 LEU A 161 1 O LEU A 161 N ALA A 141 SHEET 1 AA2 4 LEU A 180 PHE A 183 0 SHEET 2 AA2 4 THR A 195 ILE A 198 -1 O GLY A 197 N LYS A 181 SHEET 3 AA2 4 ILE A 203 GLY A 207 -1 O PHE A 205 N VAL A 196 SHEET 4 AA2 4 MET A 245 MET A 248 1 O VAL A 247 N GLY A 206 SHEET 1 AA3 8 ASP B 43 PHE B 46 0 SHEET 2 AA3 8 LEU B 49 ALA B 55 -1 O PHE B 51 N GLN B 44 SHEET 3 AA3 8 VAL B 58 LEU B 65 -1 O GLN B 60 N ARG B 52 SHEET 4 AA3 8 VAL B 73 ASP B 82 -1 O VAL B 73 N LEU B 65 SHEET 5 AA3 8 ARG B 85 VAL B 89 -1 O LEU B 87 N VAL B 80 SHEET 6 AA3 8 VAL B 113 VAL B 117 1 O VAL B 117 N VAL B 88 SHEET 7 AA3 8 ALA B 138 ASN B 142 1 O TYR B 140 N ALA B 116 SHEET 8 AA3 8 HIS B 159 LEU B 161 1 O LEU B 161 N ALA B 141 SHEET 1 AA4 4 LEU B 180 PHE B 183 0 SHEET 2 AA4 4 THR B 195 ILE B 198 -1 O GLY B 197 N LYS B 181 SHEET 3 AA4 4 ILE B 203 GLY B 207 -1 O PHE B 205 N VAL B 196 SHEET 4 AA4 4 MET B 245 MET B 248 1 O VAL B 247 N GLY B 206 LINK NE2 HIS A 120 ZN ZN A 300 1555 1555 2.08 LINK ND1 HIS A 122 ZN ZN A 300 1555 1555 1.92 LINK OD2 ASP A 124 ZN A ZN A 301 1555 1555 2.35 LINK NE2 HIS A 189 ZN ZN A 300 1555 1555 2.02 LINK SG CYS A 208 ZN A ZN A 301 1555 1555 2.16 LINK SG CYS A 208 ZN B ZN A 301 1555 1555 2.64 LINK NE2 HIS A 250 ZN A ZN A 301 1555 1555 2.15 LINK NE2 HIS A 250 ZN B ZN A 301 1555 1555 2.06 LINK ZN ZN A 300 O2 SO4 A 302 1555 1555 2.08 LINK ZN ZN A 300 S SO4 A 302 1555 1555 2.93 LINK ZN A ZN A 301 O2 SO4 A 302 1555 1555 2.57 LINK ZN A ZN A 301 S SO4 A 302 1555 1555 2.83 LINK ZN A ZN A 301 O1 SO4 A 302 1555 1555 2.15 LINK ZN B ZN A 301 O1 SO4 A 302 1555 1555 1.98 LINK NE2 HIS B 120 ZN ZN B 300 1555 1555 2.11 LINK ND1 HIS B 122 ZN ZN B 300 1555 1555 1.99 LINK OD2 ASP B 124 ZN A ZN B 301 1555 1555 2.40 LINK NE2 HIS B 189 ZN ZN B 300 1555 1555 2.06 LINK SG CYS B 208 ZN A ZN B 301 1555 1555 2.10 LINK SG CYS B 208 ZN B ZN B 301 1555 1555 2.45 LINK NE2 HIS B 250 ZN A ZN B 301 1555 1555 2.14 LINK NE2 HIS B 250 ZN B ZN B 301 1555 1555 2.11 LINK ZN ZN B 300 O2 SO4 B 302 1555 1555 2.08 LINK ZN A ZN B 301 O3 SO4 B 302 1555 1555 2.30 LINK ZN B ZN B 301 O3 SO4 B 302 1555 1555 2.18 SITE 1 AC1 4 HIS A 120 HIS A 122 HIS A 189 SO4 A 302 SITE 1 AC2 5 ASP A 124 CYS A 208 HIS A 250 SO4 A 302 SITE 2 AC2 5 CL A 303 SITE 1 AC3 11 HIS A 120 HIS A 122 ASP A 124 HIS A 189 SITE 2 AC3 11 CYS A 208 ASN A 220 HIS A 250 ZN A 300 SITE 3 AC3 11 ZN A 301 CL A 303 HOH A 455 SITE 1 AC4 6 HIS A 189 LYS A 211 ASN A 220 HIS A 250 SITE 2 AC4 6 ZN A 301 SO4 A 302 SITE 1 AC5 3 PHE A 240 PRO A 241 LYS A 242 SITE 1 AC6 2 ALA A 55 PRO A 56 SITE 1 AC7 4 ALA A 164 ALA A 165 ASN A 166 GLY B 84 SITE 1 AC8 4 HIS B 120 HIS B 122 HIS B 189 SO4 B 302 SITE 1 AC9 5 ASP B 124 CYS B 208 HIS B 250 SO4 B 302 SITE 2 AC9 5 CL B 303 SITE 1 AD1 11 HIS B 120 HIS B 122 ASP B 124 HIS B 189 SITE 2 AD1 11 CYS B 208 ASN B 220 HIS B 250 ZN B 300 SITE 3 AD1 11 ZN B 301 CL B 303 HOH B 406 SITE 1 AD2 5 HIS B 189 LYS B 211 HIS B 250 ZN B 301 SITE 2 AD2 5 SO4 B 302 SITE 1 AD3 4 PHE B 240 PRO B 241 LYS B 242 ALA B 243 SITE 1 AD4 1 ASN B 57 SITE 1 AD5 5 ALA B 164 ALA B 165 ASN B 166 HOH B 508 SITE 2 AD5 5 HOH B 532 CRYST1 39.185 78.699 130.790 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025520 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012707 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007646 0.00000