HEADER OXIDOREDUCTASE 17-SEP-18 6MH5 TITLE CRYSTAL STRUCTURE OF 1-DEOXY-D-XYLULOSE-5-PHOSPHATE REDUCTOISOMERASE TITLE 2 FROM STAPHYLOCOCCUS SCHLEIFERI IN COMPLEX WITH FOSMIDOMYCIN (FOM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DXP REDUCTOISOMERASE,1-DEOXYXYLULOSE-5-PHOSPHATE COMPND 5 REDUCTOISOMERASE,2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE; COMPND 6 EC: 1.1.1.267; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS SCHLEIFERI; SOURCE 3 ORGANISM_TAXID: 1295; SOURCE 4 GENE: DXR, SSCHL_1510; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS REDUCTOISOMERASE, STAPHYLOCOCCI, MEP PATHWAY, FOSMIDOMYCIN, GLPT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.G.LEE,J.M.JEZ REVDAT 3 13-MAR-24 6MH5 1 REMARK REVDAT 2 17-JUN-20 6MH5 1 JRNL REVDAT 1 18-MAR-20 6MH5 0 JRNL AUTH R.L.EDWARDS,I.HEUECK,S.G.LEE,I.T.SHAH,J.J.MILLER, JRNL AUTH 2 A.J.JEZEWSKI,M.O.MIKATI,X.WANG,R.C.BROTHERS,K.M.HEIDEL, JRNL AUTH 3 D.M.OSBOURN,C.D.BURNHAM,S.ALVAREZ,S.A.FRITZ,C.S.DOWD, JRNL AUTH 4 J.M.JEZ,A.R.ODOM JOHN JRNL TITL POTENT, SPECIFIC MEPICIDES FOR TREATMENT OF ZOONOTIC JRNL TITL 2 STAPHYLOCOCCI. JRNL REF PLOS PATHOG. V. 16 07806 2020 JRNL REFN ESSN 1553-7374 JRNL PMID 32497104 JRNL DOI 10.1371/JOURNAL.PPAT.1007806 REMARK 2 REMARK 2 RESOLUTION. 2.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 18276 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.0800 - 6.7819 0.98 1336 146 0.1572 0.2006 REMARK 3 2 6.7819 - 5.3856 0.98 1286 145 0.2178 0.2763 REMARK 3 3 5.3856 - 4.7056 0.99 1308 137 0.1966 0.2530 REMARK 3 4 4.7056 - 4.2757 0.99 1272 144 0.1847 0.2634 REMARK 3 5 4.2757 - 3.9694 0.97 1267 137 0.1998 0.2809 REMARK 3 6 3.9694 - 3.7355 0.98 1269 141 0.2300 0.3007 REMARK 3 7 3.7355 - 3.5485 0.98 1267 145 0.2398 0.3153 REMARK 3 8 3.5485 - 3.3941 0.99 1265 145 0.2346 0.2848 REMARK 3 9 3.3941 - 3.2635 0.99 1280 130 0.2604 0.3339 REMARK 3 10 3.2635 - 3.1509 0.99 1285 146 0.2678 0.3469 REMARK 3 11 3.1509 - 3.0524 0.96 1221 141 0.2779 0.3717 REMARK 3 12 3.0524 - 2.9652 0.98 1272 130 0.2798 0.3437 REMARK 3 13 2.9652 - 2.8870 0.89 1130 131 0.2986 0.3594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.419 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 64.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6028 REMARK 3 ANGLE : 1.194 8155 REMARK 3 CHIRALITY : 0.059 939 REMARK 3 PLANARITY : 0.007 1046 REMARK 3 DIHEDRAL : 4.173 3663 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MH5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236888. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK HIGH-RESOLUTION REMARK 200 DOUBLE-CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18289 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.887 REMARK 200 RESOLUTION RANGE LOW (A) : 46.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.89 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM HEPES/MOPS (PH 7.5), 20 MM D REMARK 280 -GLUCOSE, 20 MM D-MANNOSE, 20 MM D-GALACTOSE, 20 MM L-FUCOSE, 20 REMARK 280 MM D-XYLOSE, 20 MM N-ACETYL-D-GLUCOSAMINE, 20% (V/V) GLYCEROL, REMARK 280 10% W/V PEG 4000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 66.35650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.99150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 66.35650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.99150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -18.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 66.35650 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -26.99150 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 375 REMARK 465 VAL A 376 REMARK 465 VAL B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 175 CG CD NE CZ NH1 NH2 REMARK 470 THR B 269 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 358 OE1 GLU A 361 2.07 REMARK 500 NZ LYS B 2 O PHE B 268 2.07 REMARK 500 NZ LYS B 212 OP2 FOM B 701 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ASN B 192 C HIS B 193 N 0.163 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 95 CA - CB - CG ANGL. DEV. = 14.2 DEGREES REMARK 500 CYS B 153 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 LEU B 177 CA - CB - CG ANGL. DEV. = 19.9 DEGREES REMARK 500 LEU B 243 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 37 -115.81 58.37 REMARK 500 ASN A 38 105.95 -52.33 REMARK 500 LYS A 50 69.06 36.13 REMARK 500 HIS A 69 -171.91 -172.94 REMARK 500 ASP A 144 109.75 147.67 REMARK 500 ASN A 195 1.38 -62.26 REMARK 500 MET A 198 45.17 28.43 REMARK 500 GLN A 229 -149.85 -64.32 REMARK 500 ILE A 230 77.08 40.83 REMARK 500 THR A 249 -16.76 97.53 REMARK 500 TYR A 270 -84.59 -6.51 REMARK 500 ARG A 273 -71.29 -126.29 REMARK 500 ILE A 274 159.55 71.17 REMARK 500 HIS A 333 16.75 48.53 REMARK 500 VAL A 353 105.03 79.38 REMARK 500 LYS A 372 -168.57 -59.49 REMARK 500 LYS B 37 -14.21 70.29 REMARK 500 LYS B 48 -37.87 172.71 REMARK 500 ASN B 118 105.73 -47.54 REMARK 500 ALA B 125 23.17 -141.27 REMARK 500 LYS B 127 -45.34 92.94 REMARK 500 ARG B 135 -31.33 102.33 REMARK 500 ASP B 144 116.49 -169.81 REMARK 500 SER B 145 -63.53 -22.21 REMARK 500 PHE B 174 38.01 -99.75 REMARK 500 GLU B 176 53.36 -109.03 REMARK 500 GLU B 183 -6.64 -58.66 REMARK 500 PRO B 194 -82.44 -60.33 REMARK 500 SER B 197 112.62 -178.16 REMARK 500 MET B 198 -13.46 107.36 REMARK 500 MET B 209 1.88 81.29 REMARK 500 ILE B 239 -69.39 -106.24 REMARK 500 SER B 242 -167.71 -175.87 REMARK 500 LEU B 243 141.74 -173.88 REMARK 500 PRO B 258 69.16 -52.15 REMARK 500 ALA B 287 -59.62 61.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA B 133 LYS B 134 146.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FOM A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FOM B 701 DBREF1 6MH5 A 1 376 UNP A0A0K1A7V6_9STAP DBREF2 6MH5 A A0A0K1A7V6 1 376 DBREF1 6MH5 B 1 376 UNP A0A0K1A7V6_9STAP DBREF2 6MH5 B A0A0K1A7V6 1 376 SEQADV 6MH5 GLY A 188 UNP A0A0K1A7V GLU 188 CONFLICT SEQADV 6MH5 VAL A 284 UNP A0A0K1A7V ALA 284 CONFLICT SEQADV 6MH5 SER A 349 UNP A0A0K1A7V ALA 349 CONFLICT SEQADV 6MH5 HIS A 367 UNP A0A0K1A7V TYR 367 CONFLICT SEQADV 6MH5 GLY B 188 UNP A0A0K1A7V GLU 188 CONFLICT SEQADV 6MH5 VAL B 284 UNP A0A0K1A7V ALA 284 CONFLICT SEQADV 6MH5 SER B 349 UNP A0A0K1A7V ALA 349 CONFLICT SEQADV 6MH5 HIS B 367 UNP A0A0K1A7V TYR 367 CONFLICT SEQRES 1 A 376 MET LYS ASN ILE ALA ILE LEU GLY ALA SER GLY SER ILE SEQRES 2 A 376 GLY GLN GLN ALA ILE ASP VAL ILE ALA ARG HIS PRO GLU SEQRES 3 A 376 SER PHE ASN LEU ILE SER PHE THR VAL GLY LYS ASN ILE SEQRES 4 A 376 GLU PHE ALA ILE GLU VAL ILE GLU LYS PHE LYS PRO GLU SEQRES 5 A 376 ILE VAL SER VAL GLN ASP GLU ALA ASP VAL GLU ARG LEU SEQRES 6 A 376 LYS PRO TYR HIS SER ASN ILE VAL SER GLY ARG GLN GLY SEQRES 7 A 376 LEU ILE ASP VAL SER THR TYR GLU LYS ASN ASP LEU VAL SEQRES 8 A 376 LEU ASN ALA LEU LEU GLY SER VAL GLY LEU GLU PRO THR SEQRES 9 A 376 MET LYS ALA ILE GLU ALA GLY LYS ASN ILE ALA LEU ALA SEQRES 10 A 376 ASN LYS GLU THR LEU VAL VAL ALA GLY LYS LEU VAL MET SEQRES 11 A 376 THR HIS ALA LYS ARG TYR GLY VAL ASP ILE LEU PRO VAL SEQRES 12 A 376 ASP SER GLU HIS ALA ALA ILE PHE GLN CYS LEU ASN GLY SEQRES 13 A 376 GLU ASP MET HIS LYS ILE LYS ASN VAL THR ILE THR ALA SEQRES 14 A 376 SER GLY GLY SER PHE ARG GLU LEU THR ARG GLU GLN LEU SEQRES 15 A 376 GLU HIS VAL THR VAL GLY ASP ALA LEU ASN HIS PRO ASN SEQRES 16 A 376 TRP SER MET GLY ASN LYS ILE THR ILE ASP SER ALA THR SEQRES 17 A 376 MET MET ASN LYS GLY PHE GLU VAL ILE GLU ALA LYS TRP SEQRES 18 A 376 LEU PHE ASP LEU LYS ILE ASP GLN ILE LYS THR ILE LEU SEQRES 19 A 376 HIS LYS GLU SER ILE ILE HIS SER LEU VAL GLU PHE VAL SEQRES 20 A 376 ASP THR SER VAL MET ALA GLN LEU GLY THR PRO ASP MET SEQRES 21 A 376 ARG MET PRO ILE GLN TYR ALA PHE THR TYR PRO GLU ARG SEQRES 22 A 376 ILE GLU HIS ARG ALA PRO SER LEU ASP LEU VAL GLN VAL SEQRES 23 A 376 ALA GLN LEU HIS PHE GLN GLU MET ASP LEU ASP ARG TYR SEQRES 24 A 376 ARG CYS LEU LYS PHE ALA TYR ASP ALA LEU ARG ILE GLY SEQRES 25 A 376 GLY SER MET PRO VAL VAL LEU ASN ALA VAL ASN GLU VAL SEQRES 26 A 376 ALA VAL ALA LYS PHE LEU ASN HIS GLU ILE THR PHE LEU SEQRES 27 A 376 GLU ILE GLU HIS MET ILE GLU ARG GLU MET SER ALA HIS SEQRES 28 A 376 GLU VAL ILE PRO ASP PRO SER LEU GLU GLU ILE LEU GLU SEQRES 29 A 376 ILE ASP HIS TYR TYR LYS THR LYS SER TYR GLU VAL SEQRES 1 B 376 MET LYS ASN ILE ALA ILE LEU GLY ALA SER GLY SER ILE SEQRES 2 B 376 GLY GLN GLN ALA ILE ASP VAL ILE ALA ARG HIS PRO GLU SEQRES 3 B 376 SER PHE ASN LEU ILE SER PHE THR VAL GLY LYS ASN ILE SEQRES 4 B 376 GLU PHE ALA ILE GLU VAL ILE GLU LYS PHE LYS PRO GLU SEQRES 5 B 376 ILE VAL SER VAL GLN ASP GLU ALA ASP VAL GLU ARG LEU SEQRES 6 B 376 LYS PRO TYR HIS SER ASN ILE VAL SER GLY ARG GLN GLY SEQRES 7 B 376 LEU ILE ASP VAL SER THR TYR GLU LYS ASN ASP LEU VAL SEQRES 8 B 376 LEU ASN ALA LEU LEU GLY SER VAL GLY LEU GLU PRO THR SEQRES 9 B 376 MET LYS ALA ILE GLU ALA GLY LYS ASN ILE ALA LEU ALA SEQRES 10 B 376 ASN LYS GLU THR LEU VAL VAL ALA GLY LYS LEU VAL MET SEQRES 11 B 376 THR HIS ALA LYS ARG TYR GLY VAL ASP ILE LEU PRO VAL SEQRES 12 B 376 ASP SER GLU HIS ALA ALA ILE PHE GLN CYS LEU ASN GLY SEQRES 13 B 376 GLU ASP MET HIS LYS ILE LYS ASN VAL THR ILE THR ALA SEQRES 14 B 376 SER GLY GLY SER PHE ARG GLU LEU THR ARG GLU GLN LEU SEQRES 15 B 376 GLU HIS VAL THR VAL GLY ASP ALA LEU ASN HIS PRO ASN SEQRES 16 B 376 TRP SER MET GLY ASN LYS ILE THR ILE ASP SER ALA THR SEQRES 17 B 376 MET MET ASN LYS GLY PHE GLU VAL ILE GLU ALA LYS TRP SEQRES 18 B 376 LEU PHE ASP LEU LYS ILE ASP GLN ILE LYS THR ILE LEU SEQRES 19 B 376 HIS LYS GLU SER ILE ILE HIS SER LEU VAL GLU PHE VAL SEQRES 20 B 376 ASP THR SER VAL MET ALA GLN LEU GLY THR PRO ASP MET SEQRES 21 B 376 ARG MET PRO ILE GLN TYR ALA PHE THR TYR PRO GLU ARG SEQRES 22 B 376 ILE GLU HIS ARG ALA PRO SER LEU ASP LEU VAL GLN VAL SEQRES 23 B 376 ALA GLN LEU HIS PHE GLN GLU MET ASP LEU ASP ARG TYR SEQRES 24 B 376 ARG CYS LEU LYS PHE ALA TYR ASP ALA LEU ARG ILE GLY SEQRES 25 B 376 GLY SER MET PRO VAL VAL LEU ASN ALA VAL ASN GLU VAL SEQRES 26 B 376 ALA VAL ALA LYS PHE LEU ASN HIS GLU ILE THR PHE LEU SEQRES 27 B 376 GLU ILE GLU HIS MET ILE GLU ARG GLU MET SER ALA HIS SEQRES 28 B 376 GLU VAL ILE PRO ASP PRO SER LEU GLU GLU ILE LEU GLU SEQRES 29 B 376 ILE ASP HIS TYR TYR LYS THR LYS SER TYR GLU VAL HET FOM A 701 11 HET FOM B 701 11 HETNAM FOM 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID HETSYN FOM FOSMIDOMYCIN FORMUL 3 FOM 2(C4 H10 N O5 P) HELIX 1 AA1 GLY A 11 HIS A 24 1 14 HELIX 2 AA2 ASN A 38 LYS A 50 1 13 HELIX 3 AA3 ASP A 58 ALA A 60 5 3 HELIX 4 AA4 ASP A 61 LYS A 66 1 6 HELIX 5 AA5 GLY A 75 THR A 84 1 10 HELIX 6 AA6 GLY A 100 ALA A 110 1 11 HELIX 7 AA7 ASN A 118 ALA A 125 1 8 HELIX 8 AA8 ALA A 125 TYR A 136 1 12 HELIX 9 AA9 GLU A 146 ASN A 155 1 10 HELIX 10 AB1 ASP A 158 HIS A 160 5 3 HELIX 11 AB2 GLU A 180 HIS A 184 5 5 HELIX 12 AB3 THR A 186 LEU A 191 1 6 HELIX 13 AB4 HIS A 193 SER A 197 5 5 HELIX 14 AB5 GLY A 199 THR A 208 1 10 HELIX 15 AB6 MET A 209 PHE A 223 1 15 HELIX 16 AB7 MET A 260 TYR A 270 1 11 HELIX 17 AB8 TYR A 299 GLY A 312 1 14 HELIX 18 AB9 SER A 314 ASN A 332 1 19 HELIX 19 AC1 THR A 336 HIS A 351 1 16 HELIX 20 AC2 SER A 358 LYS A 372 1 15 HELIX 21 AC3 GLY B 11 HIS B 24 1 14 HELIX 22 AC4 ASN B 38 LYS B 50 1 13 HELIX 23 AC5 ASP B 58 ALA B 60 5 3 HELIX 24 AC6 ASP B 61 LYS B 66 1 6 HELIX 25 AC7 GLY B 75 TYR B 85 1 11 HELIX 26 AC8 LEU B 96 VAL B 99 5 4 HELIX 27 AC9 GLY B 100 ALA B 110 1 11 HELIX 28 AD1 LYS B 119 GLY B 126 1 8 HELIX 29 AD2 LYS B 127 HIS B 132 1 6 HELIX 30 AD3 ASP B 144 LEU B 154 1 11 HELIX 31 AD4 ASP B 158 HIS B 160 5 3 HELIX 32 AD5 THR B 178 GLU B 183 1 6 HELIX 33 AD6 THR B 186 ASN B 192 1 7 HELIX 34 AD7 GLY B 199 MET B 209 1 11 HELIX 35 AD8 MET B 209 PHE B 223 1 15 HELIX 36 AD9 LYS B 226 ASP B 228 5 3 HELIX 37 AE1 MET B 260 ALA B 267 1 8 HELIX 38 AE2 ASP B 282 ALA B 287 1 6 HELIX 39 AE3 TYR B 299 GLY B 312 1 14 HELIX 40 AE4 SER B 314 ASN B 332 1 19 HELIX 41 AE5 LEU B 338 HIS B 351 1 14 HELIX 42 AE6 SER B 358 LYS B 372 1 15 SHEET 1 AA1 7 ILE A 72 SER A 74 0 SHEET 2 AA1 7 ILE A 53 VAL A 56 1 N VAL A 56 O VAL A 73 SHEET 3 AA1 7 PHE A 28 THR A 34 1 N PHE A 33 O ILE A 53 SHEET 4 AA1 7 LYS A 2 ILE A 6 1 N ILE A 6 O THR A 34 SHEET 5 AA1 7 LEU A 90 ASN A 93 1 O LEU A 92 N ALA A 5 SHEET 6 AA1 7 ASN A 113 LEU A 116 1 O ALA A 115 N ASN A 93 SHEET 7 AA1 7 ILE A 140 PRO A 142 1 O LEU A 141 N ILE A 114 SHEET 1 AA2 5 VAL A 251 LEU A 255 0 SHEET 2 AA2 5 ILE A 240 PHE A 246 -1 N HIS A 241 O GLN A 254 SHEET 3 AA2 5 ILE A 162 ALA A 169 -1 N LYS A 163 O GLU A 245 SHEET 4 AA2 5 LYS A 231 LEU A 234 1 O LYS A 231 N VAL A 165 SHEET 5 AA2 5 GLN A 292 GLU A 293 -1 O GLN A 292 N LEU A 234 SHEET 1 AA3 7 ILE B 72 SER B 74 0 SHEET 2 AA3 7 ILE B 53 VAL B 56 1 N VAL B 54 O VAL B 73 SHEET 3 AA3 7 PHE B 28 THR B 34 1 N PHE B 33 O SER B 55 SHEET 4 AA3 7 LYS B 2 ILE B 6 1 N ILE B 4 O ASN B 29 SHEET 5 AA3 7 LEU B 90 ASN B 93 1 O LEU B 92 N ALA B 5 SHEET 6 AA3 7 ASN B 113 LEU B 116 1 O ALA B 115 N VAL B 91 SHEET 7 AA3 7 ILE B 140 PRO B 142 1 O LEU B 141 N ILE B 114 SHEET 1 AA4 5 VAL B 251 LEU B 255 0 SHEET 2 AA4 5 ILE B 240 PHE B 246 -1 N VAL B 244 O MET B 252 SHEET 3 AA4 5 ILE B 162 ALA B 169 -1 N THR B 166 O LEU B 243 SHEET 4 AA4 5 ILE B 230 LEU B 234 1 O ILE B 233 N ALA B 169 SHEET 5 AA4 5 GLN B 292 GLU B 293 -1 O GLN B 292 N LEU B 234 CISPEP 1 SER B 197 MET B 198 0 -20.77 CISPEP 2 TYR B 270 PRO B 271 0 3.63 SITE 1 AC1 7 LYS A 119 GLU A 146 SER A 170 ASN A 195 SITE 2 AC1 7 ASN A 211 LYS A 212 GLU A 215 SITE 1 AC2 10 LYS B 119 ASP B 144 SER B 145 GLU B 146 SITE 2 AC2 10 SER B 170 MET B 198 SER B 206 ASN B 211 SITE 3 AC2 10 LYS B 212 GLU B 215 CRYST1 132.713 53.983 115.799 90.00 91.62 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007535 0.000000 0.000213 0.00000 SCALE2 0.000000 0.018524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008639 0.00000