data_6MHT # _entry.id 6MHT # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6MHT pdb_00006mht 10.2210/pdb6mht/pdb RCSB PDE141 ? ? WWPDB D_1000179843 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 6MHT _pdbx_database_status.recvd_initial_deposition_date 1998-08-05 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Cheng, X.' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title ;DNA containing 4'-thio-2'-deoxycytidine inhibits methylation by HhaI methyltransferase. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 25 _citation.page_first 2773 _citation.page_last 2783 _citation.year 1997 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9207024 _citation.pdbx_database_id_DOI 10.1093/nar/25.14.2773 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kumar, S.' 1 ? primary 'Horton, J.R.' 2 ? primary 'Jones, G.D.' 3 ? primary 'Walker, R.T.' 4 ? primary 'Roberts, R.J.' 5 ? primary 'Cheng, X.' 6 ? # _cell.entry_id 6MHT _cell.length_a 99.860 _cell.length_b 99.860 _cell.length_c 325.200 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MHT _symmetry.space_group_name_H-M 'H 3 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting hexagonal _symmetry.Int_Tables_number 155 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man ;DNA (5'-D(P*CP*CP*AP*TP*GP*(5CM)P*GP*CP*TP*GP*AP*C)-3') ; 3637.395 1 ? ? ? ? 2 polymer man ;DNA (5'-D(P*GP*TP*CP*AP*GP*(4SC)P*GP*CP*AP*TP*GP*G)-3') ; 3733.508 1 ? ? ? ? 3 polymer man 'CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI' 37042.207 1 2.1.1.73 ? ? ? 4 non-polymer syn S-ADENOSYLMETHIONINE 398.437 1 ? ? ? ? 5 water nat water 18.015 148 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name 'MODIFICATION METHYLASE HHAI, M.HHAI' # _entity_name_sys.entity_id 3 _entity_name_sys.name E.C.2.1.1.73 # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DT)(DG)(5CM)(DG)(DC)(DT)(DG)(DA)(DC)' CCATGCGCTGAC C ? 2 polydeoxyribonucleotide no yes '(DG)(DT)(DC)(DA)(DG)(4SC)(DG)(DC)(DA)(DT)(DG)(DG)' GTCAGCGCATGG D ? 3 'polypeptide(L)' no no ;MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY ; ;MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFP CQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIP QKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGER IYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGS SLNFKPY ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DT n 1 5 DG n 1 6 5CM n 1 7 DG n 1 8 DC n 1 9 DT n 1 10 DG n 1 11 DA n 1 12 DC n 2 1 DG n 2 2 DT n 2 3 DC n 2 4 DA n 2 5 DG n 2 6 4SC n 2 7 DG n 2 8 DC n 2 9 DA n 2 10 DT n 2 11 DG n 2 12 DG n 3 1 MET n 3 2 ILE n 3 3 GLU n 3 4 ILE n 3 5 LYS n 3 6 ASP n 3 7 LYS n 3 8 GLN n 3 9 LEU n 3 10 THR n 3 11 GLY n 3 12 LEU n 3 13 ARG n 3 14 PHE n 3 15 ILE n 3 16 ASP n 3 17 LEU n 3 18 PHE n 3 19 ALA n 3 20 GLY n 3 21 LEU n 3 22 GLY n 3 23 GLY n 3 24 PHE n 3 25 ARG n 3 26 LEU n 3 27 ALA n 3 28 LEU n 3 29 GLU n 3 30 SER n 3 31 CYS n 3 32 GLY n 3 33 ALA n 3 34 GLU n 3 35 CYS n 3 36 VAL n 3 37 TYR n 3 38 SER n 3 39 ASN n 3 40 GLU n 3 41 TRP n 3 42 ASP n 3 43 LYS n 3 44 TYR n 3 45 ALA n 3 46 GLN n 3 47 GLU n 3 48 VAL n 3 49 TYR n 3 50 GLU n 3 51 MET n 3 52 ASN n 3 53 PHE n 3 54 GLY n 3 55 GLU n 3 56 LYS n 3 57 PRO n 3 58 GLU n 3 59 GLY n 3 60 ASP n 3 61 ILE n 3 62 THR n 3 63 GLN n 3 64 VAL n 3 65 ASN n 3 66 GLU n 3 67 LYS n 3 68 THR n 3 69 ILE n 3 70 PRO n 3 71 ASP n 3 72 HIS n 3 73 ASP n 3 74 ILE n 3 75 LEU n 3 76 CYS n 3 77 ALA n 3 78 GLY n 3 79 PHE n 3 80 PRO n 3 81 CYS n 3 82 GLN n 3 83 ALA n 3 84 PHE n 3 85 SER n 3 86 ILE n 3 87 SER n 3 88 GLY n 3 89 LYS n 3 90 GLN n 3 91 LYS n 3 92 GLY n 3 93 PHE n 3 94 GLU n 3 95 ASP n 3 96 SER n 3 97 ARG n 3 98 GLY n 3 99 THR n 3 100 LEU n 3 101 PHE n 3 102 PHE n 3 103 ASP n 3 104 ILE n 3 105 ALA n 3 106 ARG n 3 107 ILE n 3 108 VAL n 3 109 ARG n 3 110 GLU n 3 111 LYS n 3 112 LYS n 3 113 PRO n 3 114 LYS n 3 115 VAL n 3 116 VAL n 3 117 PHE n 3 118 MET n 3 119 GLU n 3 120 ASN n 3 121 VAL n 3 122 LYS n 3 123 ASN n 3 124 PHE n 3 125 ALA n 3 126 SER n 3 127 HIS n 3 128 ASP n 3 129 ASN n 3 130 GLY n 3 131 ASN n 3 132 THR n 3 133 LEU n 3 134 GLU n 3 135 VAL n 3 136 VAL n 3 137 LYS n 3 138 ASN n 3 139 THR n 3 140 MET n 3 141 ASN n 3 142 GLU n 3 143 LEU n 3 144 ASP n 3 145 TYR n 3 146 SER n 3 147 PHE n 3 148 HIS n 3 149 ALA n 3 150 LYS n 3 151 VAL n 3 152 LEU n 3 153 ASN n 3 154 ALA n 3 155 LEU n 3 156 ASP n 3 157 TYR n 3 158 GLY n 3 159 ILE n 3 160 PRO n 3 161 GLN n 3 162 LYS n 3 163 ARG n 3 164 GLU n 3 165 ARG n 3 166 ILE n 3 167 TYR n 3 168 MET n 3 169 ILE n 3 170 CYS n 3 171 PHE n 3 172 ARG n 3 173 ASN n 3 174 ASP n 3 175 LEU n 3 176 ASN n 3 177 ILE n 3 178 GLN n 3 179 ASN n 3 180 PHE n 3 181 GLN n 3 182 PHE n 3 183 PRO n 3 184 LYS n 3 185 PRO n 3 186 PHE n 3 187 GLU n 3 188 LEU n 3 189 ASN n 3 190 THR n 3 191 PHE n 3 192 VAL n 3 193 LYS n 3 194 ASP n 3 195 LEU n 3 196 LEU n 3 197 LEU n 3 198 PRO n 3 199 ASP n 3 200 SER n 3 201 GLU n 3 202 VAL n 3 203 GLU n 3 204 HIS n 3 205 LEU n 3 206 VAL n 3 207 ILE n 3 208 ASP n 3 209 ARG n 3 210 LYS n 3 211 ASP n 3 212 LEU n 3 213 VAL n 3 214 MET n 3 215 THR n 3 216 ASN n 3 217 GLN n 3 218 GLU n 3 219 ILE n 3 220 GLU n 3 221 GLN n 3 222 THR n 3 223 THR n 3 224 PRO n 3 225 LYS n 3 226 THR n 3 227 VAL n 3 228 ARG n 3 229 LEU n 3 230 GLY n 3 231 ILE n 3 232 VAL n 3 233 GLY n 3 234 LYS n 3 235 GLY n 3 236 GLY n 3 237 GLN n 3 238 GLY n 3 239 GLU n 3 240 ARG n 3 241 ILE n 3 242 TYR n 3 243 SER n 3 244 THR n 3 245 ARG n 3 246 GLY n 3 247 ILE n 3 248 ALA n 3 249 ILE n 3 250 THR n 3 251 LEU n 3 252 SER n 3 253 ALA n 3 254 TYR n 3 255 GLY n 3 256 GLY n 3 257 GLY n 3 258 ILE n 3 259 PHE n 3 260 ALA n 3 261 LYS n 3 262 THR n 3 263 GLY n 3 264 GLY n 3 265 TYR n 3 266 LEU n 3 267 VAL n 3 268 ASN n 3 269 GLY n 3 270 LYS n 3 271 THR n 3 272 ARG n 3 273 LYS n 3 274 LEU n 3 275 HIS n 3 276 PRO n 3 277 ARG n 3 278 GLU n 3 279 CYS n 3 280 ALA n 3 281 ARG n 3 282 VAL n 3 283 MET n 3 284 GLY n 3 285 TYR n 3 286 PRO n 3 287 ASP n 3 288 SER n 3 289 TYR n 3 290 LYS n 3 291 VAL n 3 292 HIS n 3 293 PRO n 3 294 SER n 3 295 THR n 3 296 SER n 3 297 GLN n 3 298 ALA n 3 299 TYR n 3 300 LYS n 3 301 GLN n 3 302 PHE n 3 303 GLY n 3 304 ASN n 3 305 SER n 3 306 VAL n 3 307 VAL n 3 308 ILE n 3 309 ASN n 3 310 VAL n 3 311 LEU n 3 312 GLN n 3 313 TYR n 3 314 ILE n 3 315 ALA n 3 316 TYR n 3 317 ASN n 3 318 ILE n 3 319 GLY n 3 320 SER n 3 321 SER n 3 322 LEU n 3 323 ASN n 3 324 PHE n 3 325 LYS n 3 326 PRO n 3 327 TYR n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? ? Haemophilus ? ? ? ? ? ? ? 'Haemophilus haemolyticus' 726 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? ? Haemophilus ? ? ? ? ? ? ? 'Haemophilus haemolyticus' 726 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code 1 UNP MTH1_HAEHA P05102 3 1 ? ? 2 PDB 6MHT 6MHT 1 ? ? ? 3 PDB 6MHT 6MHT 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 6MHT A 1 ? 327 ? P05102 1 ? 327 ? 1 327 2 2 6MHT C 1 ? 12 ? 6MHT 402 ? 413 ? 402 413 3 3 6MHT D 1 ? 12 ? 6MHT 422 ? 433 ? 422 433 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 4SC 'DNA linking' n ;2'-deoxy-5-methyl-4'-thiocytidine 5'-(dihydrogen phosphate) ; ? 'C10 H16 N3 O6 P S' 337.289 5CM 'DNA linking' n "5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O7 P' 321.224 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SAM non-polymer . S-ADENOSYLMETHIONINE ? 'C15 H22 N6 O5 S' 398.437 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 6MHT _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.52 _exptl_crystal.density_percent_sol 65.02 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '1.4-1.8 M AMMONIUM SULFATE 50 MM CITRATE PH 5.6, temperature 293.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 '(NH4)2SO4' ? ? ? 1 2 1 citrate ? ? ? 1 3 2 '(NH4)2SO4' ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 293.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1500 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength 1.1500 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 6MHT _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.05 _reflns.number_obs 32880 _reflns.number_all ? _reflns.percent_possible_obs 98.0 _reflns.pdbx_Rmerge_I_obs 0.078 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.33 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 6MHT _refine.ls_number_reflns_obs 30012 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 5.0 _refine.ls_d_res_high 2.05 _refine.ls_percent_reflns_obs 81.6 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.186 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.1 _refine.ls_number_reflns_R_free 2998 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 5MHT' _refine.pdbx_method_to_determine_struct OTHER _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details Random _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2607 _refine_hist.pdbx_number_atoms_nucleic_acid 492 _refine_hist.pdbx_number_atoms_ligand 29 _refine_hist.number_atoms_solvent 148 _refine_hist.number_atoms_total 3276 _refine_hist.d_res_high 2.05 _refine_hist.d_res_low 5.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.3 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.6 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 6MHT _struct.title ;TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE WITH ADOHCY AND DNA CONTAINING 4'-THIO-2'DEOXYCYTIDINE AT THE TARGET ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 6MHT _struct_keywords.pdbx_keywords TRANSFERASE/DNA _struct_keywords.text 'TRANSFERASE, METHYLTRANSFERASE, RESTRICTION SYSTEM, COMPLEX (METHYLTRANSFERASE-DNA), TRANSFERASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 23 ? CYS C 31 ? GLY A 23 CYS A 31 1 ? 9 HELX_P HELX_P2 2 LYS C 43 ? PHE C 53 ? LYS A 43 PHE A 53 1 ? 11 HELX_P HELX_P3 3 ILE C 61 ? GLN C 63 ? ILE A 61 GLN A 63 5 ? 3 HELX_P HELX_P4 4 GLY C 92 ? GLU C 94 ? GLY A 92 GLU A 94 5 ? 3 HELX_P HELX_P5 5 LEU C 100 ? LYS C 111 ? LEU A 100 LYS A 111 5 ? 12 HELX_P HELX_P6 6 LYS C 122 ? ALA C 125 ? LYS A 122 ALA A 125 5 ? 4 HELX_P HELX_P7 7 HIS C 127 ? GLU C 142 ? HIS A 127 GLU A 142 5 ? 16 HELX_P HELX_P8 8 ALA C 154 ? TYR C 157 ? ALA A 154 TYR A 157 5 ? 4 HELX_P HELX_P9 9 ASN C 173 ? LEU C 175 ? ASN A 173 LEU A 175 5 ? 3 HELX_P HELX_P10 10 VAL C 192 ? ASP C 194 ? VAL A 192 ASP A 194 5 ? 3 HELX_P HELX_P11 11 ASP C 199 ? LEU C 205 ? ASP A 199 LEU A 205 5 ? 7 HELX_P HELX_P12 12 PRO C 276 ? MET C 283 ? PRO A 276 MET A 283 1 ? 8 HELX_P HELX_P13 13 THR C 295 ? ASN C 304 ? THR A 295 ASN A 304 1 ? 10 HELX_P HELX_P14 14 ILE C 308 ? ASN C 323 ? ILE A 308 ASN A 323 1 ? 16 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 5 "O3'" ? ? ? 1_555 A 5CM 6 P ? ? C DG 406 C 5CM 407 1_555 ? ? ? ? ? ? ? 1.614 ? ? covale2 covale both ? A 5CM 6 "O3'" ? ? ? 1_555 A DG 7 P ? ? C 5CM 407 C DG 408 1_555 ? ? ? ? ? ? ? 1.629 ? ? covale3 covale none ? D SAM . CE ? ? ? 1_555 B 4SC 6 C5M ? ? D SAM 328 D 4SC 427 1_555 ? ? ? ? ? ? ? 1.463 ? ? covale4 covale both ? B DG 5 "O3'" ? ? ? 1_555 B 4SC 6 P ? ? D DG 426 D 4SC 427 1_555 ? ? ? ? ? ? ? 1.569 ? ? covale5 covale both ? B 4SC 6 "O3'" ? ? ? 1_555 B DG 7 P ? ? D 4SC 427 D DG 428 1_555 ? ? ? ? ? ? ? 1.623 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? C DC 402 D DG 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? C DC 402 D DG 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? C DC 402 D DG 433 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 11 N1 ? ? C DC 403 D DG 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 11 O6 ? ? C DC 403 D DG 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 11 N2 ? ? C DC 403 D DG 432 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 B DT 10 N3 ? ? C DA 404 D DT 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 B DT 10 O4 ? ? C DA 404 D DT 431 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DT 4 N3 ? ? ? 1_555 B DA 9 N1 ? ? C DT 405 D DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DA 9 N6 ? ? C DT 405 D DA 430 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 B DC 8 N3 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 B DC 8 O2 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DC 8 N4 ? ? C DG 406 D DC 429 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A 5CM 6 N3 ? ? ? 1_555 B DG 7 N1 ? ? C 5CM 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A 5CM 6 N4 ? ? ? 1_555 B DG 7 O6 ? ? C 5CM 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 5CM 6 O2 ? ? ? 1_555 B DG 7 N2 ? ? C 5CM 407 D DG 428 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DC 8 N3 ? ? ? 1_555 B DG 5 N1 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N4 ? ? ? 1_555 B DG 5 O6 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 O2 ? ? ? 1_555 B DG 5 N2 ? ? C DC 409 D DG 426 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 4 N1 ? ? C DT 410 D DA 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 4 N6 ? ? C DT 410 D DA 425 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? C DG 411 D DC 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? C DG 411 D DC 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? C DG 411 D DC 424 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 2 N3 ? ? C DA 412 D DT 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 2 O4 ? ? C DA 412 D DT 423 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 12 N3 ? ? ? 1_555 B DG 1 N1 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 12 N4 ? ? ? 1_555 B DG 1 O6 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 12 O2 ? ? ? 1_555 B DG 1 N2 ? ? C DC 413 D DG 422 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 HIS C 148 ? ASN C 153 ? HIS A 148 ASN A 153 A 2 GLU C 164 ? PHE C 171 ? GLU A 164 PHE A 171 A 3 VAL C 115 ? VAL C 121 ? VAL A 115 VAL A 121 A 4 ILE C 74 ? GLY C 78 ? ILE A 74 GLY A 78 A 5 ARG C 13 ? LEU C 17 ? ARG A 13 LEU A 17 A 6 GLU C 34 ? ASN C 39 ? GLU A 34 ASN A 39 B 1 TYR C 265 ? VAL C 267 ? TYR A 265 VAL A 267 B 2 LYS C 270 ? ARG C 272 ? LYS A 270 ARG A 272 C 1 ARG C 228 ? ILE C 231 ? ARG A 228 ILE A 231 C 2 ARG C 240 ? TYR C 242 ? ARG A 240 TYR A 242 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O HIS C 148 ? O HIS A 148 N ILE C 169 ? N ILE A 169 A 2 3 O ILE C 166 ? O ILE A 166 N ASN C 120 ? N ASN A 120 A 3 4 O VAL C 115 ? O VAL A 115 N LEU C 75 ? N LEU A 75 A 4 5 O ILE C 74 ? O ILE A 74 N ILE C 15 ? N ILE A 15 A 5 6 O PHE C 14 ? O PHE A 14 N GLU C 34 ? N GLU A 34 B 1 2 O TYR C 265 ? O TYR A 265 N ARG C 272 ? N ARG A 272 C 1 2 O LEU C 229 ? O LEU A 229 N ILE C 241 ? N ILE A 241 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id D _struct_site.pdbx_auth_comp_id SAM _struct_site.pdbx_auth_seq_id 328 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 21 _struct_site.details 'BINDING SITE FOR RESIDUE SAM D 328' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 21 PHE C 18 ? PHE A 18 . ? 1_555 ? 2 AC1 21 ALA C 19 ? ALA A 19 . ? 1_555 ? 3 AC1 21 GLY C 20 ? GLY A 20 . ? 1_555 ? 4 AC1 21 LEU C 21 ? LEU A 21 . ? 1_555 ? 5 AC1 21 GLY C 23 ? GLY A 23 . ? 1_555 ? 6 AC1 21 ASN C 39 ? ASN A 39 . ? 1_555 ? 7 AC1 21 GLU C 40 ? GLU A 40 . ? 1_555 ? 8 AC1 21 TRP C 41 ? TRP A 41 . ? 1_555 ? 9 AC1 21 ASP C 60 ? ASP A 60 . ? 1_555 ? 10 AC1 21 ILE C 61 ? ILE A 61 . ? 1_555 ? 11 AC1 21 GLY C 78 ? GLY A 78 . ? 1_555 ? 12 AC1 21 ASN C 304 ? ASN A 304 . ? 1_555 ? 13 AC1 21 SER C 305 ? SER A 305 . ? 1_555 ? 14 AC1 21 HOH G . ? HOH A 332 . ? 1_555 ? 15 AC1 21 HOH G . ? HOH A 340 . ? 1_555 ? 16 AC1 21 HOH F . ? HOH D 333 . ? 1_555 ? 17 AC1 21 HOH F . ? HOH D 338 . ? 1_555 ? 18 AC1 21 HOH F . ? HOH D 367 . ? 1_555 ? 19 AC1 21 HOH F . ? HOH D 384 . ? 1_555 ? 20 AC1 21 HOH F . ? HOH D 386 . ? 1_555 ? 21 AC1 21 4SC B 6 ? 4SC D 427 . ? 1_555 ? # _database_PDB_matrix.entry_id 6MHT _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 6MHT _atom_sites.fract_transf_matrix[1][1] 0.010014 _atom_sites.fract_transf_matrix[1][2] 0.005781 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011563 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003075 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 402 402 DC C C . n A 1 2 DC 2 403 403 DC C C . n A 1 3 DA 3 404 404 DA A C . n A 1 4 DT 4 405 405 DT T C . n A 1 5 DG 5 406 406 DG G C . n A 1 6 5CM 6 407 407 5CM +C C . n A 1 7 DG 7 408 408 DG G C . n A 1 8 DC 8 409 409 DC C C . n A 1 9 DT 9 410 410 DT T C . n A 1 10 DG 10 411 411 DG G C . n A 1 11 DA 11 412 412 DA A C . n A 1 12 DC 12 413 413 DC C C . n B 2 1 DG 1 422 422 DG G D . n B 2 2 DT 2 423 423 DT T D . n B 2 3 DC 3 424 424 DC C D . n B 2 4 DA 4 425 425 DA A D . n B 2 5 DG 5 426 426 DG G D . n B 2 6 4SC 6 427 427 4SC 4SC D . n B 2 7 DG 7 428 428 DG G D . n B 2 8 DC 8 429 429 DC C D . n B 2 9 DA 9 430 430 DA A D . n B 2 10 DT 10 431 431 DT T D . n B 2 11 DG 11 432 432 DG G D . n B 2 12 DG 12 433 433 DG G D . n C 3 1 MET 1 1 1 MET MET A . n C 3 2 ILE 2 2 2 ILE ILE A . n C 3 3 GLU 3 3 3 GLU GLU A . n C 3 4 ILE 4 4 4 ILE ILE A . n C 3 5 LYS 5 5 5 LYS LYS A . n C 3 6 ASP 6 6 6 ASP ASP A . n C 3 7 LYS 7 7 7 LYS LYS A . n C 3 8 GLN 8 8 8 GLN GLN A . n C 3 9 LEU 9 9 9 LEU LEU A . n C 3 10 THR 10 10 10 THR THR A . n C 3 11 GLY 11 11 11 GLY GLY A . n C 3 12 LEU 12 12 12 LEU LEU A . n C 3 13 ARG 13 13 13 ARG ARG A . n C 3 14 PHE 14 14 14 PHE PHE A . n C 3 15 ILE 15 15 15 ILE ILE A . n C 3 16 ASP 16 16 16 ASP ASP A . n C 3 17 LEU 17 17 17 LEU LEU A . n C 3 18 PHE 18 18 18 PHE PHE A . n C 3 19 ALA 19 19 19 ALA ALA A . n C 3 20 GLY 20 20 20 GLY GLY A . n C 3 21 LEU 21 21 21 LEU LEU A . n C 3 22 GLY 22 22 22 GLY GLY A . n C 3 23 GLY 23 23 23 GLY GLY A . n C 3 24 PHE 24 24 24 PHE PHE A . n C 3 25 ARG 25 25 25 ARG ARG A . n C 3 26 LEU 26 26 26 LEU LEU A . n C 3 27 ALA 27 27 27 ALA ALA A . n C 3 28 LEU 28 28 28 LEU LEU A . n C 3 29 GLU 29 29 29 GLU GLU A . n C 3 30 SER 30 30 30 SER SER A . n C 3 31 CYS 31 31 31 CYS CYS A . n C 3 32 GLY 32 32 32 GLY GLY A . n C 3 33 ALA 33 33 33 ALA ALA A . n C 3 34 GLU 34 34 34 GLU GLU A . n C 3 35 CYS 35 35 35 CYS CYS A . n C 3 36 VAL 36 36 36 VAL VAL A . n C 3 37 TYR 37 37 37 TYR TYR A . n C 3 38 SER 38 38 38 SER SER A . n C 3 39 ASN 39 39 39 ASN ASN A . n C 3 40 GLU 40 40 40 GLU GLU A . n C 3 41 TRP 41 41 41 TRP TRP A . n C 3 42 ASP 42 42 42 ASP ASP A . n C 3 43 LYS 43 43 43 LYS LYS A . n C 3 44 TYR 44 44 44 TYR TYR A . n C 3 45 ALA 45 45 45 ALA ALA A . n C 3 46 GLN 46 46 46 GLN GLN A . n C 3 47 GLU 47 47 47 GLU GLU A . n C 3 48 VAL 48 48 48 VAL VAL A . n C 3 49 TYR 49 49 49 TYR TYR A . n C 3 50 GLU 50 50 50 GLU GLU A . n C 3 51 MET 51 51 51 MET MET A . n C 3 52 ASN 52 52 52 ASN ASN A . n C 3 53 PHE 53 53 53 PHE PHE A . n C 3 54 GLY 54 54 54 GLY GLY A . n C 3 55 GLU 55 55 55 GLU GLU A . n C 3 56 LYS 56 56 56 LYS LYS A . n C 3 57 PRO 57 57 57 PRO PRO A . n C 3 58 GLU 58 58 58 GLU GLU A . n C 3 59 GLY 59 59 59 GLY GLY A . n C 3 60 ASP 60 60 60 ASP ASP A . n C 3 61 ILE 61 61 61 ILE ILE A . n C 3 62 THR 62 62 62 THR THR A . n C 3 63 GLN 63 63 63 GLN GLN A . n C 3 64 VAL 64 64 64 VAL VAL A . n C 3 65 ASN 65 65 65 ASN ASN A . n C 3 66 GLU 66 66 66 GLU GLU A . n C 3 67 LYS 67 67 67 LYS LYS A . n C 3 68 THR 68 68 68 THR THR A . n C 3 69 ILE 69 69 69 ILE ILE A . n C 3 70 PRO 70 70 70 PRO PRO A . n C 3 71 ASP 71 71 71 ASP ASP A . n C 3 72 HIS 72 72 72 HIS HIS A . n C 3 73 ASP 73 73 73 ASP ASP A . n C 3 74 ILE 74 74 74 ILE ILE A . n C 3 75 LEU 75 75 75 LEU LEU A . n C 3 76 CYS 76 76 76 CYS CYS A . n C 3 77 ALA 77 77 77 ALA ALA A . n C 3 78 GLY 78 78 78 GLY GLY A . n C 3 79 PHE 79 79 79 PHE PHE A . n C 3 80 PRO 80 80 80 PRO PRO A . n C 3 81 CYS 81 81 81 CYS CYS A . n C 3 82 GLN 82 82 82 GLN GLN A . n C 3 83 ALA 83 83 83 ALA ALA A . n C 3 84 PHE 84 84 84 PHE PHE A . n C 3 85 SER 85 85 85 SER SER A . n C 3 86 ILE 86 86 86 ILE ILE A . n C 3 87 SER 87 87 87 SER SER A . n C 3 88 GLY 88 88 88 GLY GLY A . n C 3 89 LYS 89 89 89 LYS LYS A . n C 3 90 GLN 90 90 90 GLN GLN A . n C 3 91 LYS 91 91 91 LYS LYS A . n C 3 92 GLY 92 92 92 GLY GLY A . n C 3 93 PHE 93 93 93 PHE PHE A . n C 3 94 GLU 94 94 94 GLU GLU A . n C 3 95 ASP 95 95 95 ASP ASP A . n C 3 96 SER 96 96 96 SER SER A . n C 3 97 ARG 97 97 97 ARG ARG A . n C 3 98 GLY 98 98 98 GLY GLY A . n C 3 99 THR 99 99 99 THR THR A . n C 3 100 LEU 100 100 100 LEU LEU A . n C 3 101 PHE 101 101 101 PHE PHE A . n C 3 102 PHE 102 102 102 PHE PHE A . n C 3 103 ASP 103 103 103 ASP ASP A . n C 3 104 ILE 104 104 104 ILE ILE A . n C 3 105 ALA 105 105 105 ALA ALA A . n C 3 106 ARG 106 106 106 ARG ARG A . n C 3 107 ILE 107 107 107 ILE ILE A . n C 3 108 VAL 108 108 108 VAL VAL A . n C 3 109 ARG 109 109 109 ARG ARG A . n C 3 110 GLU 110 110 110 GLU GLU A . n C 3 111 LYS 111 111 111 LYS LYS A . n C 3 112 LYS 112 112 112 LYS LYS A . n C 3 113 PRO 113 113 113 PRO PRO A . n C 3 114 LYS 114 114 114 LYS LYS A . n C 3 115 VAL 115 115 115 VAL VAL A . n C 3 116 VAL 116 116 116 VAL VAL A . n C 3 117 PHE 117 117 117 PHE PHE A . n C 3 118 MET 118 118 118 MET MET A . n C 3 119 GLU 119 119 119 GLU GLU A . n C 3 120 ASN 120 120 120 ASN ASN A . n C 3 121 VAL 121 121 121 VAL VAL A . n C 3 122 LYS 122 122 122 LYS LYS A . n C 3 123 ASN 123 123 123 ASN ASN A . n C 3 124 PHE 124 124 124 PHE PHE A . n C 3 125 ALA 125 125 125 ALA ALA A . n C 3 126 SER 126 126 126 SER SER A . n C 3 127 HIS 127 127 127 HIS HIS A . n C 3 128 ASP 128 128 128 ASP ASP A . n C 3 129 ASN 129 129 129 ASN ASN A . n C 3 130 GLY 130 130 130 GLY GLY A . n C 3 131 ASN 131 131 131 ASN ASN A . n C 3 132 THR 132 132 132 THR THR A . n C 3 133 LEU 133 133 133 LEU LEU A . n C 3 134 GLU 134 134 134 GLU GLU A . n C 3 135 VAL 135 135 135 VAL VAL A . n C 3 136 VAL 136 136 136 VAL VAL A . n C 3 137 LYS 137 137 137 LYS LYS A . n C 3 138 ASN 138 138 138 ASN ASN A . n C 3 139 THR 139 139 139 THR THR A . n C 3 140 MET 140 140 140 MET MET A . n C 3 141 ASN 141 141 141 ASN ASN A . n C 3 142 GLU 142 142 142 GLU GLU A . n C 3 143 LEU 143 143 143 LEU LEU A . n C 3 144 ASP 144 144 144 ASP ASP A . n C 3 145 TYR 145 145 145 TYR TYR A . n C 3 146 SER 146 146 146 SER SER A . n C 3 147 PHE 147 147 147 PHE PHE A . n C 3 148 HIS 148 148 148 HIS HIS A . n C 3 149 ALA 149 149 149 ALA ALA A . n C 3 150 LYS 150 150 150 LYS LYS A . n C 3 151 VAL 151 151 151 VAL VAL A . n C 3 152 LEU 152 152 152 LEU LEU A . n C 3 153 ASN 153 153 153 ASN ASN A . n C 3 154 ALA 154 154 154 ALA ALA A . n C 3 155 LEU 155 155 155 LEU LEU A . n C 3 156 ASP 156 156 156 ASP ASP A . n C 3 157 TYR 157 157 157 TYR TYR A . n C 3 158 GLY 158 158 158 GLY GLY A . n C 3 159 ILE 159 159 159 ILE ILE A . n C 3 160 PRO 160 160 160 PRO PRO A . n C 3 161 GLN 161 161 161 GLN GLN A . n C 3 162 LYS 162 162 162 LYS LYS A . n C 3 163 ARG 163 163 163 ARG ARG A . n C 3 164 GLU 164 164 164 GLU GLU A . n C 3 165 ARG 165 165 165 ARG ARG A . n C 3 166 ILE 166 166 166 ILE ILE A . n C 3 167 TYR 167 167 167 TYR TYR A . n C 3 168 MET 168 168 168 MET MET A . n C 3 169 ILE 169 169 169 ILE ILE A . n C 3 170 CYS 170 170 170 CYS CYS A . n C 3 171 PHE 171 171 171 PHE PHE A . n C 3 172 ARG 172 172 172 ARG ARG A . n C 3 173 ASN 173 173 173 ASN ASN A . n C 3 174 ASP 174 174 174 ASP ASP A . n C 3 175 LEU 175 175 175 LEU LEU A . n C 3 176 ASN 176 176 176 ASN ASN A . n C 3 177 ILE 177 177 177 ILE ILE A . n C 3 178 GLN 178 178 178 GLN GLN A . n C 3 179 ASN 179 179 179 ASN ASN A . n C 3 180 PHE 180 180 180 PHE PHE A . n C 3 181 GLN 181 181 181 GLN GLN A . n C 3 182 PHE 182 182 182 PHE PHE A . n C 3 183 PRO 183 183 183 PRO PRO A . n C 3 184 LYS 184 184 184 LYS LYS A . n C 3 185 PRO 185 185 185 PRO PRO A . n C 3 186 PHE 186 186 186 PHE PHE A . n C 3 187 GLU 187 187 187 GLU GLU A . n C 3 188 LEU 188 188 188 LEU LEU A . n C 3 189 ASN 189 189 189 ASN ASN A . n C 3 190 THR 190 190 190 THR THR A . n C 3 191 PHE 191 191 191 PHE PHE A . n C 3 192 VAL 192 192 192 VAL VAL A . n C 3 193 LYS 193 193 193 LYS LYS A . n C 3 194 ASP 194 194 194 ASP ASP A . n C 3 195 LEU 195 195 195 LEU LEU A . n C 3 196 LEU 196 196 196 LEU LEU A . n C 3 197 LEU 197 197 197 LEU LEU A . n C 3 198 PRO 198 198 198 PRO PRO A . n C 3 199 ASP 199 199 199 ASP ASP A . n C 3 200 SER 200 200 200 SER SER A . n C 3 201 GLU 201 201 201 GLU GLU A . n C 3 202 VAL 202 202 202 VAL VAL A . n C 3 203 GLU 203 203 203 GLU GLU A . n C 3 204 HIS 204 204 204 HIS HIS A . n C 3 205 LEU 205 205 205 LEU LEU A . n C 3 206 VAL 206 206 206 VAL VAL A . n C 3 207 ILE 207 207 207 ILE ILE A . n C 3 208 ASP 208 208 208 ASP ASP A . n C 3 209 ARG 209 209 209 ARG ARG A . n C 3 210 LYS 210 210 210 LYS LYS A . n C 3 211 ASP 211 211 211 ASP ASP A . n C 3 212 LEU 212 212 212 LEU LEU A . n C 3 213 VAL 213 213 213 VAL VAL A . n C 3 214 MET 214 214 214 MET MET A . n C 3 215 THR 215 215 215 THR THR A . n C 3 216 ASN 216 216 216 ASN ASN A . n C 3 217 GLN 217 217 217 GLN GLN A . n C 3 218 GLU 218 218 218 GLU GLU A . n C 3 219 ILE 219 219 219 ILE ILE A . n C 3 220 GLU 220 220 220 GLU GLU A . n C 3 221 GLN 221 221 221 GLN GLN A . n C 3 222 THR 222 222 222 THR THR A . n C 3 223 THR 223 223 223 THR THR A . n C 3 224 PRO 224 224 224 PRO PRO A . n C 3 225 LYS 225 225 225 LYS LYS A . n C 3 226 THR 226 226 226 THR THR A . n C 3 227 VAL 227 227 227 VAL VAL A . n C 3 228 ARG 228 228 228 ARG ARG A . n C 3 229 LEU 229 229 229 LEU LEU A . n C 3 230 GLY 230 230 230 GLY GLY A . n C 3 231 ILE 231 231 231 ILE ILE A . n C 3 232 VAL 232 232 232 VAL VAL A . n C 3 233 GLY 233 233 233 GLY GLY A . n C 3 234 LYS 234 234 234 LYS LYS A . n C 3 235 GLY 235 235 235 GLY GLY A . n C 3 236 GLY 236 236 236 GLY GLY A . n C 3 237 GLN 237 237 237 GLN GLN A . n C 3 238 GLY 238 238 238 GLY GLY A . n C 3 239 GLU 239 239 239 GLU GLU A . n C 3 240 ARG 240 240 240 ARG ARG A . n C 3 241 ILE 241 241 241 ILE ILE A . n C 3 242 TYR 242 242 242 TYR TYR A . n C 3 243 SER 243 243 243 SER SER A . n C 3 244 THR 244 244 244 THR THR A . n C 3 245 ARG 245 245 245 ARG ARG A . n C 3 246 GLY 246 246 246 GLY GLY A . n C 3 247 ILE 247 247 247 ILE ILE A . n C 3 248 ALA 248 248 248 ALA ALA A . n C 3 249 ILE 249 249 249 ILE ILE A . n C 3 250 THR 250 250 250 THR THR A . n C 3 251 LEU 251 251 251 LEU LEU A . n C 3 252 SER 252 252 252 SER SER A . n C 3 253 ALA 253 253 253 ALA ALA A . n C 3 254 TYR 254 254 254 TYR TYR A . n C 3 255 GLY 255 255 255 GLY GLY A . n C 3 256 GLY 256 256 256 GLY GLY A . n C 3 257 GLY 257 257 257 GLY GLY A . n C 3 258 ILE 258 258 258 ILE ILE A . n C 3 259 PHE 259 259 259 PHE PHE A . n C 3 260 ALA 260 260 260 ALA ALA A . n C 3 261 LYS 261 261 261 LYS LYS A . n C 3 262 THR 262 262 262 THR THR A . n C 3 263 GLY 263 263 263 GLY GLY A . n C 3 264 GLY 264 264 264 GLY GLY A . n C 3 265 TYR 265 265 265 TYR TYR A . n C 3 266 LEU 266 266 266 LEU LEU A . n C 3 267 VAL 267 267 267 VAL VAL A . n C 3 268 ASN 268 268 268 ASN ASN A . n C 3 269 GLY 269 269 269 GLY GLY A . n C 3 270 LYS 270 270 270 LYS LYS A . n C 3 271 THR 271 271 271 THR THR A . n C 3 272 ARG 272 272 272 ARG ARG A . n C 3 273 LYS 273 273 273 LYS LYS A . n C 3 274 LEU 274 274 274 LEU LEU A . n C 3 275 HIS 275 275 275 HIS HIS A . n C 3 276 PRO 276 276 276 PRO PRO A . n C 3 277 ARG 277 277 277 ARG ARG A . n C 3 278 GLU 278 278 278 GLU GLU A . n C 3 279 CYS 279 279 279 CYS CYS A . n C 3 280 ALA 280 280 280 ALA ALA A . n C 3 281 ARG 281 281 281 ARG ARG A . n C 3 282 VAL 282 282 282 VAL VAL A . n C 3 283 MET 283 283 283 MET MET A . n C 3 284 GLY 284 284 284 GLY GLY A . n C 3 285 TYR 285 285 285 TYR TYR A . n C 3 286 PRO 286 286 286 PRO PRO A . n C 3 287 ASP 287 287 287 ASP ASP A . n C 3 288 SER 288 288 288 SER SER A . n C 3 289 TYR 289 289 289 TYR TYR A . n C 3 290 LYS 290 290 290 LYS LYS A . n C 3 291 VAL 291 291 291 VAL VAL A . n C 3 292 HIS 292 292 292 HIS HIS A . n C 3 293 PRO 293 293 293 PRO PRO A . n C 3 294 SER 294 294 294 SER SER A . n C 3 295 THR 295 295 295 THR THR A . n C 3 296 SER 296 296 296 SER SER A . n C 3 297 GLN 297 297 297 GLN GLN A . n C 3 298 ALA 298 298 298 ALA ALA A . n C 3 299 TYR 299 299 299 TYR TYR A . n C 3 300 LYS 300 300 300 LYS LYS A . n C 3 301 GLN 301 301 301 GLN GLN A . n C 3 302 PHE 302 302 302 PHE PHE A . n C 3 303 GLY 303 303 303 GLY GLY A . n C 3 304 ASN 304 304 304 ASN ASN A . n C 3 305 SER 305 305 305 SER SER A . n C 3 306 VAL 306 306 306 VAL VAL A . n C 3 307 VAL 307 307 307 VAL VAL A . n C 3 308 ILE 308 308 308 ILE ILE A . n C 3 309 ASN 309 309 309 ASN ASN A . n C 3 310 VAL 310 310 310 VAL VAL A . n C 3 311 LEU 311 311 311 LEU LEU A . n C 3 312 GLN 312 312 312 GLN GLN A . n C 3 313 TYR 313 313 313 TYR TYR A . n C 3 314 ILE 314 314 314 ILE ILE A . n C 3 315 ALA 315 315 315 ALA ALA A . n C 3 316 TYR 316 316 316 TYR TYR A . n C 3 317 ASN 317 317 317 ASN ASN A . n C 3 318 ILE 318 318 318 ILE ILE A . n C 3 319 GLY 319 319 319 GLY GLY A . n C 3 320 SER 320 320 320 SER SER A . n C 3 321 SER 321 321 321 SER SER A . n C 3 322 LEU 322 322 322 LEU LEU A . n C 3 323 ASN 323 323 323 ASN ASN A . n C 3 324 PHE 324 324 324 PHE PHE A . n C 3 325 LYS 325 325 325 LYS LYS A . n C 3 326 PRO 326 326 326 PRO PRO A . n C 3 327 TYR 327 327 327 TYR TYR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 SAM 1 328 328 SAM SAM D . E 5 HOH 1 414 349 HOH HOH C . E 5 HOH 2 415 361 HOH HOH C . E 5 HOH 3 416 371 HOH HOH C . E 5 HOH 4 417 385 HOH HOH C . E 5 HOH 5 418 391 HOH HOH C . E 5 HOH 6 419 403 HOH HOH C . E 5 HOH 7 420 426 HOH HOH C . E 5 HOH 8 421 427 HOH HOH C . E 5 HOH 9 422 429 HOH HOH C . E 5 HOH 10 423 471 HOH HOH C . E 5 HOH 11 424 474 HOH HOH C . E 5 HOH 12 425 481 HOH HOH C . E 5 HOH 13 426 483 HOH HOH C . F 5 HOH 1 333 333 HOH HOH D . F 5 HOH 2 338 338 HOH HOH D . F 5 HOH 3 342 342 HOH HOH D . F 5 HOH 4 354 354 HOH HOH D . F 5 HOH 5 367 367 HOH HOH D . F 5 HOH 6 384 384 HOH HOH D . F 5 HOH 7 386 386 HOH HOH D . F 5 HOH 8 387 387 HOH HOH D . F 5 HOH 9 400 400 HOH HOH D . F 5 HOH 10 401 401 HOH HOH D . F 5 HOH 11 441 441 HOH HOH D . F 5 HOH 12 448 448 HOH HOH D . F 5 HOH 13 451 451 HOH HOH D . F 5 HOH 14 452 452 HOH HOH D . F 5 HOH 15 460 460 HOH HOH D . F 5 HOH 16 485 485 HOH HOH D . G 5 HOH 1 329 329 HOH HOH A . G 5 HOH 2 330 330 HOH HOH A . G 5 HOH 3 331 331 HOH HOH A . G 5 HOH 4 332 332 HOH HOH A . G 5 HOH 5 334 334 HOH HOH A . G 5 HOH 6 335 335 HOH HOH A . G 5 HOH 7 336 336 HOH HOH A . G 5 HOH 8 337 337 HOH HOH A . G 5 HOH 9 339 339 HOH HOH A . G 5 HOH 10 340 340 HOH HOH A . G 5 HOH 11 341 341 HOH HOH A . G 5 HOH 12 343 343 HOH HOH A . G 5 HOH 13 344 344 HOH HOH A . G 5 HOH 14 346 346 HOH HOH A . G 5 HOH 15 347 347 HOH HOH A . G 5 HOH 16 348 348 HOH HOH A . G 5 HOH 17 350 350 HOH HOH A . G 5 HOH 18 351 351 HOH HOH A . G 5 HOH 19 352 352 HOH HOH A . G 5 HOH 20 353 353 HOH HOH A . G 5 HOH 21 355 355 HOH HOH A . G 5 HOH 22 356 356 HOH HOH A . G 5 HOH 23 357 357 HOH HOH A . G 5 HOH 24 358 358 HOH HOH A . G 5 HOH 25 359 359 HOH HOH A . G 5 HOH 26 360 360 HOH HOH A . G 5 HOH 27 362 362 HOH HOH A . G 5 HOH 28 363 363 HOH HOH A . G 5 HOH 29 364 364 HOH HOH A . G 5 HOH 30 365 365 HOH HOH A . G 5 HOH 31 366 366 HOH HOH A . G 5 HOH 32 368 368 HOH HOH A . G 5 HOH 33 369 369 HOH HOH A . G 5 HOH 34 370 370 HOH HOH A . G 5 HOH 35 372 372 HOH HOH A . G 5 HOH 36 373 373 HOH HOH A . G 5 HOH 37 374 374 HOH HOH A . G 5 HOH 38 375 375 HOH HOH A . G 5 HOH 39 376 376 HOH HOH A . G 5 HOH 40 377 377 HOH HOH A . G 5 HOH 41 378 378 HOH HOH A . G 5 HOH 42 379 379 HOH HOH A . G 5 HOH 43 380 380 HOH HOH A . G 5 HOH 44 381 381 HOH HOH A . G 5 HOH 45 382 382 HOH HOH A . G 5 HOH 46 383 383 HOH HOH A . G 5 HOH 47 388 388 HOH HOH A . G 5 HOH 48 389 389 HOH HOH A . G 5 HOH 49 390 390 HOH HOH A . G 5 HOH 50 393 393 HOH HOH A . G 5 HOH 51 394 394 HOH HOH A . G 5 HOH 52 395 395 HOH HOH A . G 5 HOH 53 396 396 HOH HOH A . G 5 HOH 54 397 397 HOH HOH A . G 5 HOH 55 398 398 HOH HOH A . G 5 HOH 56 399 399 HOH HOH A . G 5 HOH 57 405 405 HOH HOH A . G 5 HOH 58 406 406 HOH HOH A . G 5 HOH 59 407 407 HOH HOH A . G 5 HOH 60 408 408 HOH HOH A . G 5 HOH 61 410 410 HOH HOH A . G 5 HOH 62 411 411 HOH HOH A . G 5 HOH 63 412 412 HOH HOH A . G 5 HOH 64 413 413 HOH HOH A . G 5 HOH 65 415 415 HOH HOH A . G 5 HOH 66 416 416 HOH HOH A . G 5 HOH 67 417 417 HOH HOH A . G 5 HOH 68 418 418 HOH HOH A . G 5 HOH 69 419 419 HOH HOH A . G 5 HOH 70 420 420 HOH HOH A . G 5 HOH 71 421 421 HOH HOH A . G 5 HOH 72 423 423 HOH HOH A . G 5 HOH 73 424 424 HOH HOH A . G 5 HOH 74 425 425 HOH HOH A . G 5 HOH 75 428 428 HOH HOH A . G 5 HOH 76 430 430 HOH HOH A . G 5 HOH 77 431 431 HOH HOH A . G 5 HOH 78 432 432 HOH HOH A . G 5 HOH 79 434 434 HOH HOH A . G 5 HOH 80 435 435 HOH HOH A . G 5 HOH 81 436 436 HOH HOH A . G 5 HOH 82 437 437 HOH HOH A . G 5 HOH 83 438 438 HOH HOH A . G 5 HOH 84 439 439 HOH HOH A . G 5 HOH 85 440 440 HOH HOH A . G 5 HOH 86 442 442 HOH HOH A . G 5 HOH 87 443 443 HOH HOH A . G 5 HOH 88 444 444 HOH HOH A . G 5 HOH 89 445 445 HOH HOH A . G 5 HOH 90 446 446 HOH HOH A . G 5 HOH 91 447 447 HOH HOH A . G 5 HOH 92 449 449 HOH HOH A . G 5 HOH 93 450 450 HOH HOH A . G 5 HOH 94 453 453 HOH HOH A . G 5 HOH 95 454 454 HOH HOH A . G 5 HOH 96 455 455 HOH HOH A . G 5 HOH 97 456 456 HOH HOH A . G 5 HOH 98 457 457 HOH HOH A . G 5 HOH 99 458 458 HOH HOH A . G 5 HOH 100 459 459 HOH HOH A . G 5 HOH 101 461 461 HOH HOH A . G 5 HOH 102 462 462 HOH HOH A . G 5 HOH 103 463 463 HOH HOH A . G 5 HOH 104 464 464 HOH HOH A . G 5 HOH 105 465 465 HOH HOH A . G 5 HOH 106 466 466 HOH HOH A . G 5 HOH 107 467 467 HOH HOH A . G 5 HOH 108 468 468 HOH HOH A . G 5 HOH 109 469 469 HOH HOH A . G 5 HOH 110 470 470 HOH HOH A . G 5 HOH 111 472 472 HOH HOH A . G 5 HOH 112 473 473 HOH HOH A . G 5 HOH 113 475 475 HOH HOH A . G 5 HOH 114 476 476 HOH HOH A . G 5 HOH 115 479 479 HOH HOH A . G 5 HOH 116 480 480 HOH HOH A . G 5 HOH 117 482 482 HOH HOH A . G 5 HOH 118 484 484 HOH HOH A . G 5 HOH 119 486 486 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5CM 6 C 5CM 407 ? DC ? 2 B 4SC 6 D 4SC 427 ? DC ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1998-08-12 2 'Structure model' 1 1 2008-05-22 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2022-04-13 5 'Structure model' 2 1 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Non-polymer description' 6 4 'Structure model' 'Structure summary' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' database_2 3 4 'Structure model' entity 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.formula' 2 4 'Structure model' '_chem_comp.formula_weight' 3 4 'Structure model' '_chem_comp.name' 4 4 'Structure model' '_database_2.pdbx_DOI' 5 4 'Structure model' '_database_2.pdbx_database_accession' 6 4 'Structure model' '_entity.formula_weight' 7 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR refinement 3.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" C DC 402 ? ? "C4'" C DC 402 ? ? 1.558 1.512 0.046 0.007 N 2 1 "C5'" C DC 403 ? ? "C4'" C DC 403 ? ? 1.573 1.512 0.061 0.007 N 3 1 P C DA 404 ? ? "O5'" C DA 404 ? ? 1.655 1.593 0.062 0.010 N 4 1 C5 C DT 405 ? ? C7 C DT 405 ? ? 1.579 1.496 0.083 0.006 N 5 1 C5 C DG 408 ? ? N7 C DG 408 ? ? 1.429 1.388 0.041 0.006 N 6 1 C5 C DT 410 ? ? C7 C DT 410 ? ? 1.549 1.496 0.053 0.006 N 7 1 C2 C DG 411 ? ? N3 C DG 411 ? ? 1.373 1.323 0.050 0.008 N 8 1 P C DA 412 ? ? "O5'" C DA 412 ? ? 1.659 1.593 0.066 0.010 N 9 1 C8 C DA 412 ? ? N9 C DA 412 ? ? 1.425 1.373 0.052 0.008 N 10 1 "C5'" D DG 422 ? ? "C4'" D DG 422 ? ? 1.567 1.512 0.055 0.007 N 11 1 P D DT 423 ? ? "O5'" D DT 423 ? ? 1.657 1.593 0.064 0.010 N 12 1 "C5'" D DT 423 ? ? "C4'" D DT 423 ? ? 1.576 1.512 0.064 0.007 N 13 1 N3 D DC 424 ? ? C4 D DC 424 ? ? 1.293 1.335 -0.042 0.007 N 14 1 N7 D DA 425 ? ? C8 D DA 425 ? ? 1.360 1.311 0.049 0.007 N 15 1 P D DG 426 ? ? "O5'" D DG 426 ? ? 1.670 1.593 0.077 0.010 N 16 1 "C5'" D DG 426 ? ? "C4'" D DG 426 ? ? 1.582 1.512 0.070 0.007 N 17 1 N9 D DG 426 ? ? C4 D DG 426 ? ? 1.439 1.375 0.064 0.008 N 18 1 "C5'" D DG 428 ? ? "C4'" D DG 428 ? ? 1.559 1.512 0.047 0.007 N 19 1 N3 D DG 428 ? ? C4 D DG 428 ? ? 1.397 1.350 0.047 0.007 N 20 1 C5 D DG 428 ? ? N7 D DG 428 ? ? 1.429 1.388 0.041 0.006 N 21 1 N9 D DG 428 ? ? C4 D DG 428 ? ? 1.434 1.375 0.059 0.008 N 22 1 "O3'" D DG 428 ? ? P D DC 429 ? ? 1.691 1.607 0.084 0.012 Y 23 1 "C5'" D DC 429 ? ? "C4'" D DC 429 ? ? 1.613 1.512 0.101 0.007 N 24 1 "C5'" D DA 430 ? ? "C4'" D DA 430 ? ? 1.567 1.512 0.055 0.007 N 25 1 N3 D DA 430 ? ? C4 D DA 430 ? ? 1.304 1.344 -0.040 0.006 N 26 1 "O3'" D DA 430 ? ? P D DT 431 ? ? 1.693 1.607 0.086 0.012 Y 27 1 C5 D DT 431 ? ? C7 D DT 431 ? ? 1.556 1.496 0.060 0.006 N 28 1 "C2'" D DG 433 ? ? "C1'" D DG 433 ? ? 1.589 1.519 0.070 0.010 N 29 1 C2 D DG 433 ? ? N3 D DG 433 ? ? 1.376 1.323 0.053 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 402 ? ? "C4'" C DC 402 ? ? "C3'" C DC 402 ? ? 101.34 104.50 -3.16 0.40 N 2 1 N1 C DC 402 ? ? C2 C DC 402 ? ? O2 C DC 402 ? ? 125.39 118.90 6.49 0.60 N 3 1 N3 C DC 402 ? ? C2 C DC 402 ? ? O2 C DC 402 ? ? 113.89 121.90 -8.01 0.70 N 4 1 "C3'" C DC 402 ? ? "O3'" C DC 402 ? ? P C DC 403 ? ? 135.37 119.70 15.67 1.20 Y 5 1 "O4'" C DC 403 ? ? "C1'" C DC 403 ? ? "C2'" C DC 403 ? ? 99.97 105.90 -5.93 0.80 N 6 1 N1 C DC 403 ? ? C2 C DC 403 ? ? O2 C DC 403 ? ? 122.89 118.90 3.99 0.60 N 7 1 N3 C DC 403 ? ? C2 C DC 403 ? ? O2 C DC 403 ? ? 117.38 121.90 -4.52 0.70 N 8 1 "C3'" C DC 403 ? ? "O3'" C DC 403 ? ? P C DA 404 ? ? 132.37 119.70 12.67 1.20 Y 9 1 "O4'" C DA 404 ? ? "C1'" C DA 404 ? ? "C2'" C DA 404 ? ? 100.49 105.90 -5.41 0.80 N 10 1 "O4'" C DA 404 ? ? "C1'" C DA 404 ? ? N9 C DA 404 ? ? 101.91 108.00 -6.09 0.70 N 11 1 C2 C DA 404 ? ? N3 C DA 404 ? ? C4 C DA 404 ? ? 107.06 110.60 -3.54 0.50 N 12 1 "O4'" C DT 405 ? ? "C1'" C DT 405 ? ? "C2'" C DT 405 ? ? 95.09 105.90 -10.81 0.80 N 13 1 N1 C DT 405 ? ? C2 C DT 405 ? ? N3 C DT 405 ? ? 118.94 114.60 4.34 0.60 N 14 1 C4 C DT 405 ? ? C5 C DT 405 ? ? C6 C DT 405 ? ? 122.16 118.00 4.16 0.60 N 15 1 N3 C DT 405 ? ? C2 C DT 405 ? ? O2 C DT 405 ? ? 117.10 122.30 -5.20 0.60 N 16 1 "C4'" C DG 406 ? ? "C3'" C DG 406 ? ? "C2'" C DG 406 ? ? 95.74 102.20 -6.46 0.70 N 17 1 "O4'" C DG 406 ? ? "C1'" C DG 406 ? ? "C2'" C DG 406 ? ? 94.05 105.90 -11.85 0.80 N 18 1 N3 C DG 406 ? ? C4 C DG 406 ? ? C5 C DG 406 ? ? 125.00 128.60 -3.60 0.50 N 19 1 C8 C DG 406 ? ? N9 C DG 406 ? ? C4 C DG 406 ? ? 103.77 106.40 -2.63 0.40 N 20 1 N1 C DG 406 ? ? C2 C DG 406 ? ? N2 C DG 406 ? ? 109.78 116.20 -6.42 0.90 N 21 1 N3 C DG 406 ? ? C2 C DG 406 ? ? N2 C DG 406 ? ? 124.40 119.90 4.50 0.70 N 22 1 "O4'" C DC 409 ? ? "C1'" C DC 409 ? ? "C2'" C DC 409 ? ? 99.11 105.90 -6.79 0.80 N 23 1 "O4'" C DC 409 ? ? "C1'" C DC 409 ? ? N1 C DC 409 ? ? 111.86 108.30 3.56 0.30 N 24 1 "C5'" C DT 410 ? ? "C4'" C DT 410 ? ? "O4'" C DT 410 ? ? 117.38 109.80 7.58 1.10 N 25 1 "O4'" C DT 410 ? ? "C1'" C DT 410 ? ? "C2'" C DT 410 ? ? 100.73 105.90 -5.17 0.80 N 26 1 "O4'" C DT 410 ? ? "C1'" C DT 410 ? ? N1 C DT 410 ? ? 111.27 108.30 2.97 0.30 N 27 1 N1 C DT 410 ? ? C2 C DT 410 ? ? N3 C DT 410 ? ? 118.20 114.60 3.60 0.60 N 28 1 N3 C DT 410 ? ? C2 C DT 410 ? ? O2 C DT 410 ? ? 117.23 122.30 -5.07 0.60 N 29 1 C4 C DT 410 ? ? C5 C DT 410 ? ? C7 C DT 410 ? ? 113.80 119.00 -5.20 0.60 N 30 1 "O4'" C DG 411 ? ? "C1'" C DG 411 ? ? "C2'" C DG 411 ? ? 100.23 105.90 -5.67 0.80 N 31 1 C4 C DG 411 ? ? C5 C DG 411 ? ? C6 C DG 411 ? ? 122.45 118.80 3.65 0.60 N 32 1 C5 C DG 411 ? ? N7 C DG 411 ? ? C8 C DG 411 ? ? 101.15 104.30 -3.15 0.50 N 33 1 N7 C DG 411 ? ? C8 C DG 411 ? ? N9 C DG 411 ? ? 116.10 113.10 3.00 0.50 N 34 1 C8 C DG 411 ? ? N9 C DG 411 ? ? C4 C DG 411 ? ? 103.73 106.40 -2.67 0.40 N 35 1 C6 C DG 411 ? ? C5 C DG 411 ? ? N7 C DG 411 ? ? 125.74 130.40 -4.66 0.60 N 36 1 "O4'" C DA 412 ? ? "C1'" C DA 412 ? ? "C2'" C DA 412 ? ? 101.07 105.90 -4.83 0.80 N 37 1 "O4'" C DA 412 ? ? "C1'" C DA 412 ? ? N9 C DA 412 ? ? 111.49 108.30 3.19 0.30 N 38 1 C5 C DA 412 ? ? C6 C DA 412 ? ? N1 C DA 412 ? ? 121.63 117.70 3.93 0.50 N 39 1 C5 C DA 412 ? ? C6 C DA 412 ? ? N6 C DA 412 ? ? 118.10 123.70 -5.60 0.80 N 40 1 N1 C DC 413 ? ? C2 C DC 413 ? ? O2 C DC 413 ? ? 123.14 118.90 4.24 0.60 N 41 1 N3 C DC 413 ? ? C2 C DC 413 ? ? O2 C DC 413 ? ? 116.76 121.90 -5.14 0.70 N 42 1 "C4'" D DG 422 ? ? "C3'" D DG 422 ? ? "C2'" D DG 422 ? ? 97.88 102.20 -4.32 0.70 N 43 1 C8 D DG 422 ? ? N9 D DG 422 ? ? C4 D DG 422 ? ? 103.36 106.40 -3.04 0.40 N 44 1 "O4'" D DT 423 ? ? "C1'" D DT 423 ? ? N1 D DT 423 ? ? 113.12 108.30 4.82 0.30 N 45 1 C4 D DT 423 ? ? C5 D DT 423 ? ? C6 D DT 423 ? ? 122.23 118.00 4.23 0.60 N 46 1 "O4'" D DC 424 ? ? "C1'" D DC 424 ? ? "C2'" D DC 424 ? ? 101.03 105.90 -4.87 0.80 N 47 1 "O4'" D DC 424 ? ? "C1'" D DC 424 ? ? N1 D DC 424 ? ? 111.30 108.30 3.00 0.30 N 48 1 C2 D DC 424 ? ? N3 D DC 424 ? ? C4 D DC 424 ? ? 116.57 119.90 -3.33 0.50 N 49 1 N3 D DC 424 ? ? C2 D DC 424 ? ? O2 D DC 424 ? ? 114.26 121.90 -7.64 0.70 N 50 1 "C3'" D DC 424 ? ? "O3'" D DC 424 ? ? P D DA 425 ? ? 135.66 119.70 15.96 1.20 Y 51 1 C2 D DG 426 ? ? N3 D DG 426 ? ? C4 D DG 426 ? ? 115.54 111.90 3.64 0.50 N 52 1 C8 D DG 426 ? ? N9 D DG 426 ? ? C4 D DG 426 ? ? 103.41 106.40 -2.99 0.40 N 53 1 "O4'" D DG 428 ? ? "C1'" D DG 428 ? ? N9 D DG 428 ? ? 114.62 108.30 6.32 0.30 N 54 1 C2 D DG 428 ? ? N3 D DG 428 ? ? C4 D DG 428 ? ? 115.14 111.90 3.24 0.50 N 55 1 N3 D DG 428 ? ? C4 D DG 428 ? ? C5 D DG 428 ? ? 125.40 128.60 -3.20 0.50 N 56 1 C5 D DG 428 ? ? C6 D DG 428 ? ? N1 D DG 428 ? ? 114.81 111.50 3.31 0.50 N 57 1 "C3'" D DG 428 ? ? "O3'" D DG 428 ? ? P D DC 429 ? ? 129.77 119.70 10.07 1.20 Y 58 1 "O4'" D DC 429 ? ? "C4'" D DC 429 ? ? "C3'" D DC 429 ? ? 100.76 104.50 -3.74 0.40 N 59 1 "C1'" D DC 429 ? ? "O4'" D DC 429 ? ? "C4'" D DC 429 ? ? 116.93 110.30 6.63 0.70 N 60 1 "O4'" D DC 429 ? ? "C1'" D DC 429 ? ? "C2'" D DC 429 ? ? 96.90 105.90 -9.00 0.80 N 61 1 N1 D DC 429 ? ? C2 D DC 429 ? ? O2 D DC 429 ? ? 123.27 118.90 4.37 0.60 N 62 1 N3 D DC 429 ? ? C2 D DC 429 ? ? O2 D DC 429 ? ? 116.57 121.90 -5.33 0.70 N 63 1 "O4'" D DA 430 ? ? "C1'" D DA 430 ? ? "C2'" D DA 430 ? ? 100.88 105.90 -5.02 0.80 N 64 1 "O4'" D DA 430 ? ? "C1'" D DA 430 ? ? N9 D DA 430 ? ? 114.73 108.30 6.43 0.30 N 65 1 C6 D DA 430 ? ? N1 D DA 430 ? ? C2 D DA 430 ? ? 114.37 118.60 -4.23 0.60 N 66 1 N9 D DA 430 ? ? C4 D DA 430 ? ? C5 D DA 430 ? ? 108.24 105.80 2.44 0.40 N 67 1 "O4'" D DT 431 ? ? "C1'" D DT 431 ? ? "C2'" D DT 431 ? ? 98.13 105.90 -7.77 0.80 N 68 1 "O4'" D DT 431 ? ? "C1'" D DT 431 ? ? N1 D DT 431 ? ? 111.66 108.30 3.36 0.30 N 69 1 N1 D DT 431 ? ? C2 D DT 431 ? ? N3 D DT 431 ? ? 118.66 114.60 4.06 0.60 N 70 1 C4 D DT 431 ? ? C5 D DT 431 ? ? C6 D DT 431 ? ? 122.58 118.00 4.58 0.60 N 71 1 N1 D DT 431 ? ? C2 D DT 431 ? ? O2 D DT 431 ? ? 128.07 123.10 4.97 0.80 N 72 1 N3 D DT 431 ? ? C2 D DT 431 ? ? O2 D DT 431 ? ? 113.12 122.30 -9.18 0.60 N 73 1 C6 D DT 431 ? ? C5 D DT 431 ? ? C7 D DT 431 ? ? 117.69 122.90 -5.21 0.60 N 74 1 "O4'" D DG 432 ? ? "C4'" D DG 432 ? ? "C3'" D DG 432 ? ? 102.06 104.50 -2.44 0.40 N 75 1 "O4'" D DG 433 ? ? "C1'" D DG 433 ? ? "C2'" D DG 433 ? ? 99.52 105.90 -6.38 0.80 N 76 1 C5 D DG 433 ? ? N7 D DG 433 ? ? C8 D DG 433 ? ? 101.28 104.30 -3.02 0.50 N 77 1 C8 D DG 433 ? ? N9 D DG 433 ? ? C4 D DG 433 ? ? 103.59 106.40 -2.81 0.40 N 78 1 CD A LYS 137 ? ? CE A LYS 137 ? ? NZ A LYS 137 ? ? 136.75 111.70 25.05 2.30 N 79 1 CD A LYS 193 ? ? CE A LYS 193 ? ? NZ A LYS 193 ? ? 153.18 111.70 41.48 2.30 N 80 1 O A ILE 249 ? ? C A ILE 249 ? ? N A THR 250 ? ? 106.38 122.70 -16.32 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TYR A 37 ? ? -171.45 144.40 2 1 GLU A 40 ? ? -172.36 133.05 3 1 ASP A 60 ? ? -0.60 98.21 4 1 ALA A 77 ? ? -164.08 112.18 5 1 ASP A 144 ? ? 78.98 45.96 6 1 THR A 250 ? ? -29.44 127.19 7 1 PHE A 259 ? ? -104.56 48.67 8 1 LYS A 261 ? ? 68.85 -26.43 9 1 ASN A 268 ? ? 39.84 51.38 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id ILE _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 249 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 16.95 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG C 411 ? ? 0.058 'SIDE CHAIN' 2 1 DG D 428 ? ? 0.051 'SIDE CHAIN' 3 1 TYR A 157 ? ? 0.064 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 6MHT 'double helix' 6MHT 'b-form double helix' 6MHT 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 -0.268 -0.337 -0.113 -7.293 -2.520 -7.845 1 C_DC402:DG433_D C 402 ? D 433 ? 19 1 1 A DC 2 1_555 B DG 11 1_555 0.535 -0.108 0.192 1.364 -4.766 5.712 2 C_DC403:DG432_D C 403 ? D 432 ? 19 1 1 A DA 3 1_555 B DT 10 1_555 0.895 -0.064 0.074 -4.941 0.109 -2.220 3 C_DA404:DT431_D C 404 ? D 431 ? 20 1 1 A DT 4 1_555 B DA 9 1_555 -0.362 0.059 -0.254 14.398 -6.710 -1.077 4 C_DT405:DA430_D C 405 ? D 430 ? 20 1 1 A DG 5 1_555 B DC 8 1_555 0.020 0.057 -0.149 9.175 1.795 -5.319 5 C_DG406:DC429_D C 406 ? D 429 ? 19 1 1 A 5CM 6 1_555 B DG 7 1_555 0.229 0.060 -0.384 5.628 0.506 -2.417 6 C_5CM407:DG428_D C 407 ? D 428 ? 19 1 1 A DC 8 1_555 B DG 5 1_555 0.259 -0.002 0.018 0.328 -4.637 3.403 7 C_DC409:DG426_D C 409 ? D 426 ? 19 1 1 A DT 9 1_555 B DA 4 1_555 -0.425 -0.211 -0.106 -0.046 -7.794 -0.104 8 C_DT410:DA425_D C 410 ? D 425 ? 20 1 1 A DG 10 1_555 B DC 3 1_555 0.326 -0.410 -0.044 6.067 -0.161 -4.159 9 C_DG411:DC424_D C 411 ? D 424 ? 19 1 1 A DA 11 1_555 B DT 2 1_555 0.378 -0.090 -0.198 9.658 -2.560 -8.857 10 C_DA412:DT423_D C 412 ? D 423 ? 20 1 1 A DC 12 1_555 B DG 1 1_555 0.247 -0.380 -0.016 12.857 -12.211 1.768 11 C_DC413:DG422_D C 413 ? D 422 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DC 2 1_555 B DG 11 1_555 0.056 -0.786 3.443 -1.087 2.238 35.343 -1.635 -0.259 3.385 3.681 1.787 35.428 1 CC_DC402DC403:DG432DG433_DD C 402 ? D 433 ? C 403 ? D 432 ? 1 A DC 2 1_555 B DG 11 1_555 A DA 3 1_555 B DT 10 1_555 -0.347 -0.011 3.568 2.699 3.271 39.948 -0.421 0.839 3.527 4.771 -3.937 40.164 2 CC_DC403DA404:DT431DG432_DD C 403 ? D 432 ? C 404 ? D 431 ? 1 A DA 3 1_555 B DT 10 1_555 A DT 4 1_555 B DA 9 1_555 0.031 -0.513 3.034 2.291 3.450 20.943 -2.677 0.775 2.899 9.374 -6.225 21.344 3 CC_DA404DT405:DA430DT431_DD C 404 ? D 431 ? C 405 ? D 430 ? 1 A DT 4 1_555 B DA 9 1_555 A DG 5 1_555 B DC 8 1_555 -0.974 0.382 3.616 -4.250 -0.614 41.499 0.608 0.868 3.688 -0.863 5.979 41.711 4 CC_DT405DG406:DC429DA430_DD C 405 ? D 430 ? C 406 ? D 429 ? 1 A DG 5 1_555 B DC 8 1_555 A 5CM 6 1_555 B DG 7 1_555 0.904 -1.030 3.855 0.189 -5.880 33.959 -0.636 -1.490 3.977 -9.975 -0.321 34.450 5 CC_DG4065CM407:DG428DC429_DD C 406 ? D 429 ? C 407 ? D 428 ? 1 A DC 8 1_555 B DG 5 1_555 A DT 9 1_555 B DA 4 1_555 -0.290 -0.153 3.566 -0.464 3.003 34.210 -0.772 0.411 3.544 5.092 0.786 34.340 6 CC_DC409DT410:DA425DG426_DD C 409 ? D 426 ? C 410 ? D 425 ? 1 A DT 9 1_555 B DA 4 1_555 A DG 10 1_555 B DC 3 1_555 0.019 0.400 3.422 -0.048 3.076 40.386 0.217 -0.033 3.442 4.447 0.070 40.498 7 CC_DT410DG411:DC424DA425_DD C 410 ? D 425 ? C 411 ? D 424 ? 1 A DG 10 1_555 B DC 3 1_555 A DA 11 1_555 B DT 2 1_555 -0.153 -0.554 3.518 -1.607 6.698 28.027 -2.692 -0.071 3.303 13.571 3.256 28.844 8 CC_DG411DA412:DT423DC424_DD C 411 ? D 424 ? C 412 ? D 423 ? 1 A DA 11 1_555 B DT 2 1_555 A DC 12 1_555 B DG 1 1_555 1.111 -1.431 3.421 -4.600 4.500 28.710 -3.772 -3.161 2.957 8.933 9.132 29.407 9 CC_DA412DC413:DG422DT423_DD C 412 ? D 423 ? C 413 ? D 422 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 S-ADENOSYLMETHIONINE SAM 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5MHT _pdbx_initial_refinement_model.details 'PDB ENTRY 5MHT' #