HEADER METAL BINDING PROTEIN 19-SEP-18 6MI5 TITLE NMR SOLUTION STRUCTURE OF LANMODULIN (LANM) COMPLEXED WITH TITLE 2 YTTRIUM(III) IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: LANMODULIN; COMPND 3 CHAIN: X; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS (STRAIN ATCC 14718 SOURCE 3 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1); SOURCE 4 ORGANISM_TAXID: 272630; SOURCE 5 STRAIN: ATCC 14718 / DSM 1338 / JCM 2805 / NCIMB 9133 / AM1; SOURCE 6 GENE: MEXAM1_META1P1786; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS LANTHANIDE, EF-HAND, METHYLOTROPH, PERIPLASM, METAL BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 12 AUTHOR E.C.COOK,E.R.FEATHERSON,S.A.SHOWALTER,J.A.COTRUVO JR. REVDAT 4 01-MAY-24 6MI5 1 LINK REVDAT 3 30-OCT-19 6MI5 1 REMARK REVDAT 2 13-FEB-19 6MI5 1 JRNL REVDAT 1 07-NOV-18 6MI5 0 JRNL AUTH E.C.COOK,E.R.FEATHERSTON,S.A.SHOWALTER,J.A.COTRUVO JR. JRNL TITL STRUCTURAL BASIS FOR RARE EARTH ELEMENT RECOGNITION BY JRNL TITL 2 METHYLOBACTERIUM EXTORQUENS LANMODULIN. JRNL REF BIOCHEMISTRY V. 58 120 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30352145 JRNL DOI 10.1021/ACS.BIOCHEM.8B01019 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE AND TALOS RESTRAINTS REMARK 4 REMARK 4 6MI5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000236984. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 46MM REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.14 MM [U-99% 13C; U-99% 15N] REMARK 210 LANMODULIN, 90% H2O/10% D2O; REMARK 210 1.26 MM [U-99% 13C; U-99% 15N] REMARK 210 LANMODULIN, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-13C NOESY ALIPHATIC; 3D 1H REMARK 210 -15N NOESY; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D HN(CA)CO; REMARK 210 3D HCCH-TOCSY; 3D H(CCO)NH; 2D REMARK 210 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, ARIA, SPARKY, AMBER 14 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 12 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 12 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ASP X 37 OD1 - CG - OD2 ANGL. DEV. = -13.2 DEGREES REMARK 500 1 ASP X 37 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 1 ASP X 37 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 ASP X 39 OD1 - CG - OD2 ANGL. DEV. = -12.2 DEGREES REMARK 500 1 ASP X 39 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 1 GLU X 46 OE1 - CD - OE2 ANGL. DEV. = -12.2 DEGREES REMARK 500 1 ASP X 61 OD1 - CG - OD2 ANGL. DEV. = -12.8 DEGREES REMARK 500 1 ASP X 61 CB - CG - OD1 ANGL. DEV. = 9.5 DEGREES REMARK 500 1 ASP X 63 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 1 GLU X 70 OE1 - CD - OE2 ANGL. DEV. = -13.1 DEGREES REMARK 500 1 ASP X 88 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 1 GLU X 95 OE1 - CD - OE2 ANGL. DEV. = -12.6 DEGREES REMARK 500 1 ARG X 118 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 ARG X 133 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 ARG X 133 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 2 ASP X 37 OD1 - CG - OD2 ANGL. DEV. = -14.6 DEGREES REMARK 500 2 ASP X 37 CB - CG - OD2 ANGL. DEV. = 11.1 DEGREES REMARK 500 2 ASP X 39 OD1 - CG - OD2 ANGL. DEV. = -14.2 DEGREES REMARK 500 2 ASP X 39 CB - CG - OD1 ANGL. DEV. = 7.7 DEGREES REMARK 500 2 ASP X 39 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 2 GLU X 46 OE1 - CD - OE2 ANGL. DEV. = -14.7 DEGREES REMARK 500 2 ASP X 61 OD1 - CG - OD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 2 ASP X 61 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 2 ASP X 63 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 2 GLU X 70 OE1 - CD - OE2 ANGL. DEV. = -10.3 DEGREES REMARK 500 2 ARG X 74 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 2 ASP X 84 OD1 - CG - OD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 2 ASP X 84 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 2 ASP X 84 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 2 ASP X 86 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 2 ASP X 88 OD1 - CG - OD2 ANGL. DEV. = -11.6 DEGREES REMARK 500 2 ASP X 88 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 2 ASP X 92 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 2 GLU X 95 OE1 - CD - OE2 ANGL. DEV. = -13.3 DEGREES REMARK 500 2 ARG X 118 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 ARG X 133 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 3 ASP X 37 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 3 ASP X 39 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 3 GLU X 46 OE1 - CD - OE2 ANGL. DEV. = -13.0 DEGREES REMARK 500 3 ASP X 61 CB - CG - OD1 ANGL. DEV. = 8.4 DEGREES REMARK 500 3 ASP X 63 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 3 GLU X 70 OE1 - CD - OE2 ANGL. DEV. = -11.9 DEGREES REMARK 500 3 ARG X 74 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 3 ASP X 86 OD1 - CG - OD2 ANGL. DEV. = -11.8 DEGREES REMARK 500 3 ASP X 86 CB - CG - OD2 ANGL. DEV. = 7.7 DEGREES REMARK 500 3 ASP X 92 OD1 - CG - OD2 ANGL. DEV. = -13.9 DEGREES REMARK 500 3 ASP X 92 CB - CG - OD2 ANGL. DEV. = 8.3 DEGREES REMARK 500 3 GLU X 95 OE1 - CD - OE2 ANGL. DEV. = -11.4 DEGREES REMARK 500 3 ARG X 118 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 3 ARG X 133 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 178 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR X 24 -94.76 54.90 REMARK 500 1 VAL X 29 -8.67 -140.83 REMARK 500 1 LYS X 38 52.45 23.68 REMARK 500 1 LEU X 71 30.63 -80.28 REMARK 500 1 LYS X 72 104.88 -50.65 REMARK 500 1 ALA X 98 -34.30 -134.56 REMARK 500 1 ASN X 111 -167.39 69.00 REMARK 500 1 LEU X 120 -69.51 -139.44 REMARK 500 1 ALA X 121 42.99 -64.06 REMARK 500 1 PRO X 123 -119.58 -80.69 REMARK 500 1 SER X 126 -9.78 -55.81 REMARK 500 1 ALA X 127 -72.32 -60.94 REMARK 500 1 ILE X 132 -13.01 -142.40 REMARK 500 1 HIS X 134 -156.47 39.55 REMARK 500 1 HIS X 138 -143.56 -140.31 REMARK 500 2 THR X 24 -177.18 55.62 REMARK 500 2 THR X 26 15.88 56.41 REMARK 500 2 LYS X 28 75.28 52.80 REMARK 500 2 ASP X 30 -163.98 -164.09 REMARK 500 2 ASP X 37 -43.49 -145.83 REMARK 500 2 LYS X 38 30.88 38.46 REMARK 500 2 ALA X 68 4.15 -69.16 REMARK 500 2 ASP X 86 2.17 -64.66 REMARK 500 2 ALA X 98 -31.47 -150.39 REMARK 500 2 ASP X 110 -117.85 -87.51 REMARK 500 2 ASP X 112 -48.28 -169.05 REMARK 500 2 ALA X 121 43.50 -70.56 REMARK 500 2 PRO X 123 -150.43 -65.54 REMARK 500 2 ARG X 133 -76.02 -84.97 REMARK 500 2 HIS X 134 141.06 62.54 REMARK 500 2 HIS X 135 67.24 -156.58 REMARK 500 3 THR X 26 -39.22 -142.50 REMARK 500 3 VAL X 29 -154.47 -102.91 REMARK 500 3 ASP X 30 -137.69 -81.54 REMARK 500 3 LYS X 38 65.44 8.98 REMARK 500 3 ASP X 39 0.80 -69.21 REMARK 500 3 LEU X 58 -69.60 -107.46 REMARK 500 3 ASP X 59 101.44 -57.90 REMARK 500 3 LYS X 62 -0.98 74.59 REMARK 500 3 LEU X 97 -61.45 -101.90 REMARK 500 3 LEU X 120 -64.30 -91.39 REMARK 500 3 ALA X 121 25.16 -54.15 REMARK 500 3 PRO X 123 -124.79 -67.56 REMARK 500 3 HIS X 134 152.53 57.15 REMARK 500 3 HIS X 136 42.73 -80.67 REMARK 500 3 HIS X 138 92.26 -67.26 REMARK 500 4 THR X 27 -8.26 -151.35 REMARK 500 4 VAL X 29 -13.86 -143.23 REMARK 500 4 ASP X 30 -175.27 -172.45 REMARK 500 4 ILE X 31 -34.98 -39.39 REMARK 500 REMARK 500 THIS ENTRY HAS 180 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS X 28 VAL X 29 1 -145.29 REMARK 500 ASP X 30 ILE X 31 1 149.65 REMARK 500 THR X 41 ILE X 42 1 141.09 REMARK 500 ILE X 42 ASP X 43 1 146.65 REMARK 500 LEU X 58 ASP X 59 1 -148.63 REMARK 500 THR X 65 LEU X 66 1 -130.71 REMARK 500 LEU X 66 ASP X 67 1 -146.67 REMARK 500 ASP X 110 ASN X 111 1 149.12 REMARK 500 SER X 122 PRO X 123 1 145.79 REMARK 500 HIS X 134 HIS X 135 1 139.30 REMARK 500 ASP X 39 GLY X 40 2 147.99 REMARK 500 LEU X 120 ALA X 121 2 -143.12 REMARK 500 SER X 122 PRO X 123 2 125.23 REMARK 500 ARG X 133 HIS X 134 2 -138.12 REMARK 500 LEU X 83 ASP X 84 3 -148.40 REMARK 500 ASP X 88 GLY X 89 3 -148.03 REMARK 500 ASN X 108 PRO X 109 3 -147.65 REMARK 500 LEU X 120 ALA X 121 3 -138.76 REMARK 500 SER X 122 PRO X 123 3 133.45 REMARK 500 GLY X 40 THR X 41 4 -137.89 REMARK 500 THR X 41 ILE X 42 4 143.14 REMARK 500 ARG X 74 VAL X 75 4 -149.05 REMARK 500 ASN X 108 PRO X 109 4 -125.41 REMARK 500 LEU X 120 ALA X 121 4 -149.54 REMARK 500 ASP X 39 GLY X 40 5 144.29 REMARK 500 THR X 41 ILE X 42 5 149.61 REMARK 500 LEU X 120 ALA X 121 5 -147.63 REMARK 500 SER X 122 PRO X 123 5 133.44 REMARK 500 ASP X 39 GLY X 40 6 119.20 REMARK 500 GLY X 40 THR X 41 6 -136.09 REMARK 500 THR X 41 ILE X 42 6 147.79 REMARK 500 LEU X 66 ASP X 67 6 -148.47 REMARK 500 ASP X 88 GLY X 89 6 -140.32 REMARK 500 SER X 122 PRO X 123 6 115.29 REMARK 500 HIS X 136 HIS X 137 6 149.37 REMARK 500 ASP X 35 PRO X 36 7 137.53 REMARK 500 ASP X 37 LYS X 38 7 -145.84 REMARK 500 LYS X 38 ASP X 39 7 149.59 REMARK 500 THR X 41 ILE X 42 7 140.95 REMARK 500 LEU X 66 ASP X 67 7 -133.93 REMARK 500 PRO X 109 ASP X 110 7 -146.32 REMARK 500 LEU X 120 ALA X 121 7 -148.03 REMARK 500 SER X 122 PRO X 123 7 136.43 REMARK 500 ASP X 30 ILE X 31 8 144.55 REMARK 500 LEU X 66 ASP X 67 8 -142.81 REMARK 500 ARG X 74 VAL X 75 8 -146.33 REMARK 500 LEU X 83 ASP X 84 8 -124.93 REMARK 500 ASP X 88 GLY X 89 8 -145.34 REMARK 500 LYS X 38 ASP X 39 9 148.47 REMARK 500 THR X 41 ILE X 42 9 149.72 REMARK 500 REMARK 500 THIS ENTRY HAS 71 NON CIS, NON-TRANS OMEGA OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG X 118 0.09 SIDE CHAIN REMARK 500 2 TYR X 96 0.07 SIDE CHAIN REMARK 500 3 ARG X 133 0.11 SIDE CHAIN REMARK 500 4 ARG X 74 0.10 SIDE CHAIN REMARK 500 7 TYR X 96 0.07 SIDE CHAIN REMARK 500 8 ARG X 118 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 X 200 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 35 OD2 REMARK 620 2 ASP X 37 OD1 88.7 REMARK 620 3 ASP X 37 OD2 72.2 51.1 REMARK 620 4 ASP X 39 OD1 141.8 75.5 70.9 REMARK 620 5 ASP X 39 OD2 107.4 113.9 73.4 52.3 REMARK 620 6 THR X 41 O 69.0 157.5 115.5 120.0 71.8 REMARK 620 7 GLU X 46 OE1 79.3 108.3 144.2 138.6 137.3 71.7 REMARK 620 8 GLU X 46 OE2 112.5 69.4 120.4 94.5 140.1 121.2 52.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 X 201 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 59 OD1 REMARK 620 2 ASP X 61 OD1 91.3 REMARK 620 3 ASP X 61 OD2 43.3 53.2 REMARK 620 4 ASP X 63 OD1 93.6 84.9 72.2 REMARK 620 5 ASP X 63 OD2 60.3 120.6 74.5 50.8 REMARK 620 6 THR X 65 O 107.8 160.8 143.8 93.2 70.9 REMARK 620 7 ASP X 67 OD1 122.1 91.6 131.8 144.2 147.6 78.7 REMARK 620 8 GLU X 70 OE1 56.0 76.6 71.4 143.3 114.1 114.2 68.7 REMARK 620 9 GLU X 70 OE2 52.6 126.5 94.5 129.0 78.2 68.8 80.7 51.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YT3 X 202 Y REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP X 84 OD1 REMARK 620 2 ASP X 84 OD2 19.9 REMARK 620 3 ASP X 86 OD1 77.3 74.0 REMARK 620 4 ASP X 86 OD2 106.8 97.5 32.5 REMARK 620 5 ASP X 88 OD1 102.0 87.2 122.6 102.8 REMARK 620 6 ASP X 88 OD2 78.1 58.3 70.9 65.1 53.6 REMARK 620 7 ASP X 92 OD1 136.2 145.3 140.2 116.1 77.7 127.6 REMARK 620 8 GLU X 95 OE1 73.9 93.6 105.7 126.9 129.6 151.8 73.6 REMARK 620 9 GLU X 95 OE2 106.3 122.4 73.3 77.7 150.3 141.9 75.7 53.2 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 X 200 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 X 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YT3 X 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30515 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF LANMODULIN DBREF 6MI5 X 23 133 UNP C5B164 C5B164_METEA 23 133 SEQADV 6MI5 HIS X 134 UNP C5B164 EXPRESSION TAG SEQADV 6MI5 HIS X 135 UNP C5B164 EXPRESSION TAG SEQADV 6MI5 HIS X 136 UNP C5B164 EXPRESSION TAG SEQADV 6MI5 HIS X 137 UNP C5B164 EXPRESSION TAG SEQADV 6MI5 HIS X 138 UNP C5B164 EXPRESSION TAG SEQADV 6MI5 HIS X 139 UNP C5B164 EXPRESSION TAG SEQRES 1 X 117 PRO THR THR THR THR LYS VAL ASP ILE ALA ALA PHE ASP SEQRES 2 X 117 PRO ASP LYS ASP GLY THR ILE ASP LEU LYS GLU ALA LEU SEQRES 3 X 117 ALA ALA GLY SER ALA ALA PHE ASP LYS LEU ASP PRO ASP SEQRES 4 X 117 LYS ASP GLY THR LEU ASP ALA LYS GLU LEU LYS GLY ARG SEQRES 5 X 117 VAL SER GLU ALA ASP LEU LYS LYS LEU ASP PRO ASP ASN SEQRES 6 X 117 ASP GLY THR LEU ASP LYS LYS GLU TYR LEU ALA ALA VAL SEQRES 7 X 117 GLU ALA GLN PHE LYS ALA ALA ASN PRO ASP ASN ASP GLY SEQRES 8 X 117 THR ILE ASP ALA ARG GLU LEU ALA SER PRO ALA GLY SER SEQRES 9 X 117 ALA LEU VAL ASN LEU ILE ARG HIS HIS HIS HIS HIS HIS HET YT3 X 200 1 HET YT3 X 201 1 HET YT3 X 202 1 HETNAM YT3 YTTRIUM (III) ION FORMUL 2 YT3 3(Y 3+) HELIX 1 AA1 ASP X 30 PHE X 34 5 5 HELIX 2 AA2 LEU X 44 ASP X 59 1 16 HELIX 3 AA3 LYS X 93 LEU X 97 1 5 HELIX 4 AA4 ALA X 98 ASN X 108 1 11 HELIX 5 AA5 ASP X 116 ALA X 121 1 6 HELIX 6 AA6 GLY X 125 ASN X 130 1 6 SHEET 1 AA1 2 ILE X 42 ASP X 43 0 SHEET 2 AA1 2 THR X 114 ILE X 115 -1 O ILE X 115 N ILE X 42 SHEET 1 AA2 2 THR X 65 LEU X 66 0 SHEET 2 AA2 2 LEU X 91 ASP X 92 -1 O LEU X 91 N LEU X 66 LINK OD2 ASP X 35 Y YT3 X 200 1555 1555 2.18 LINK OD1 ASP X 37 Y YT3 X 200 1555 1555 2.37 LINK OD2 ASP X 37 Y YT3 X 200 1555 1555 2.37 LINK OD1 ASP X 39 Y YT3 X 200 1555 1555 2.33 LINK OD2 ASP X 39 Y YT3 X 200 1555 1555 2.38 LINK O THR X 41 Y YT3 X 200 1555 1555 2.54 LINK OE1 GLU X 46 Y YT3 X 200 1555 1555 2.28 LINK OE2 GLU X 46 Y YT3 X 200 1555 1555 2.33 LINK OD1 ASP X 59 Y YT3 X 201 1555 1555 4.56 LINK OD1 ASP X 61 Y YT3 X 201 1555 1555 2.24 LINK OD2 ASP X 61 Y YT3 X 201 1555 1555 2.30 LINK OD1 ASP X 63 Y YT3 X 201 1555 1555 2.53 LINK OD2 ASP X 63 Y YT3 X 201 1555 1555 2.31 LINK O THR X 65 Y YT3 X 201 1555 1555 2.41 LINK OD1 ASP X 67 Y YT3 X 201 1555 1555 2.22 LINK OE1 GLU X 70 Y YT3 X 201 1555 1555 2.41 LINK OE2 GLU X 70 Y YT3 X 201 1555 1555 2.32 LINK OD1 ASP X 84 Y YT3 X 202 1555 1555 2.22 LINK OD2 ASP X 84 Y YT3 X 202 1555 1555 4.15 LINK OD1 ASP X 86 Y YT3 X 202 1555 1555 2.30 LINK OD2 ASP X 86 Y YT3 X 202 1555 1555 3.72 LINK OD1 ASP X 88 Y YT3 X 202 1555 1555 2.23 LINK OD2 ASP X 88 Y YT3 X 202 1555 1555 2.36 LINK OD1 ASP X 92 Y YT3 X 202 1555 1555 2.26 LINK OE1 GLU X 95 Y YT3 X 202 1555 1555 2.33 LINK OE2 GLU X 95 Y YT3 X 202 1555 1555 2.26 SITE 1 AC1 5 ASP X 35 ASP X 37 ASP X 39 THR X 41 SITE 2 AC1 5 GLU X 46 SITE 1 AC2 6 ASP X 59 ASP X 61 ASP X 63 THR X 65 SITE 2 AC2 6 ASP X 67 GLU X 70 SITE 1 AC3 5 ASP X 84 ASP X 86 ASP X 88 ASP X 92 SITE 2 AC3 5 GLU X 95 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1