data_6MJK # _entry.id 6MJK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 6MJK pdb_00006mjk 10.2210/pdb6mjk/pdb WWPDB D_1000237008 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 6MJK _pdbx_database_status.recvd_initial_deposition_date 2018-09-21 _pdbx_database_status.SG_entry Y _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Seattle Structural Genomics Center for Infectious Disease (SSGCID)' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'to be published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Delker, S.L.' 1 ? primary 'Abendroth, J.' 2 ? primary 'Lorimer, D.' 3 ? primary 'Edwards, T.E.' 4 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 6MJK _cell.details ? _cell.formula_units_Z ? _cell.length_a 74.230 _cell.length_a_esd ? _cell.length_b 74.230 _cell.length_b_esd ? _cell.length_c 74.230 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 12 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6MJK _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'dUTP pyrophosphatase' 16843.117 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn "2'-DEOXYURIDINE" 228.202 1 ? ? ? ? 4 non-polymer syn PYROPHOSPHATE 177.975 1 ? ? ? ? 5 water nat water 18.015 166 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name NafoA.01242.a.B1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAHHHHHHMSTPQLMRVKKLSEFAILPVRSSQFAAGFDLASAYDYVVPARGKCLVKTDLAVAVPHGYYGRVAPRSGLAVK NFIDVGAGVVDSDYRGNLGVLLFNHGDEDFKIARGDRIAQFVIEQIALPDIVEVDDLDETERGAGGFGSTGVKSK ; _entity_poly.pdbx_seq_one_letter_code_can ;MAHHHHHHMSTPQLMRVKKLSEFAILPVRSSQFAAGFDLASAYDYVVPARGKCLVKTDLAVAVPHGYYGRVAPRSGLAVK NFIDVGAGVVDSDYRGNLGVLLFNHGDEDFKIARGDRIAQFVIEQIALPDIVEVDDLDETERGAGGFGSTGVKSK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 MET n 1 10 SER n 1 11 THR n 1 12 PRO n 1 13 GLN n 1 14 LEU n 1 15 MET n 1 16 ARG n 1 17 VAL n 1 18 LYS n 1 19 LYS n 1 20 LEU n 1 21 SER n 1 22 GLU n 1 23 PHE n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 PRO n 1 28 VAL n 1 29 ARG n 1 30 SER n 1 31 SER n 1 32 GLN n 1 33 PHE n 1 34 ALA n 1 35 ALA n 1 36 GLY n 1 37 PHE n 1 38 ASP n 1 39 LEU n 1 40 ALA n 1 41 SER n 1 42 ALA n 1 43 TYR n 1 44 ASP n 1 45 TYR n 1 46 VAL n 1 47 VAL n 1 48 PRO n 1 49 ALA n 1 50 ARG n 1 51 GLY n 1 52 LYS n 1 53 CYS n 1 54 LEU n 1 55 VAL n 1 56 LYS n 1 57 THR n 1 58 ASP n 1 59 LEU n 1 60 ALA n 1 61 VAL n 1 62 ALA n 1 63 VAL n 1 64 PRO n 1 65 HIS n 1 66 GLY n 1 67 TYR n 1 68 TYR n 1 69 GLY n 1 70 ARG n 1 71 VAL n 1 72 ALA n 1 73 PRO n 1 74 ARG n 1 75 SER n 1 76 GLY n 1 77 LEU n 1 78 ALA n 1 79 VAL n 1 80 LYS n 1 81 ASN n 1 82 PHE n 1 83 ILE n 1 84 ASP n 1 85 VAL n 1 86 GLY n 1 87 ALA n 1 88 GLY n 1 89 VAL n 1 90 VAL n 1 91 ASP n 1 92 SER n 1 93 ASP n 1 94 TYR n 1 95 ARG n 1 96 GLY n 1 97 ASN n 1 98 LEU n 1 99 GLY n 1 100 VAL n 1 101 LEU n 1 102 LEU n 1 103 PHE n 1 104 ASN n 1 105 HIS n 1 106 GLY n 1 107 ASP n 1 108 GLU n 1 109 ASP n 1 110 PHE n 1 111 LYS n 1 112 ILE n 1 113 ALA n 1 114 ARG n 1 115 GLY n 1 116 ASP n 1 117 ARG n 1 118 ILE n 1 119 ALA n 1 120 GLN n 1 121 PHE n 1 122 VAL n 1 123 ILE n 1 124 GLU n 1 125 GLN n 1 126 ILE n 1 127 ALA n 1 128 LEU n 1 129 PRO n 1 130 ASP n 1 131 ILE n 1 132 VAL n 1 133 GLU n 1 134 VAL n 1 135 ASP n 1 136 ASP n 1 137 LEU n 1 138 ASP n 1 139 GLU n 1 140 THR n 1 141 GLU n 1 142 ARG n 1 143 GLY n 1 144 ALA n 1 145 GLY n 1 146 GLY n 1 147 PHE n 1 148 GLY n 1 149 SER n 1 150 THR n 1 151 GLY n 1 152 VAL n 1 153 LYS n 1 154 SER n 1 155 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 155 _entity_src_gen.gene_src_common_name 'Brain eating amoeba' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Naegleria fowleri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5763 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A0A1Z0YU86_NAEFO _struct_ref.pdbx_db_accession A0A1Z0YU86 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSTPQLMRVKKLSEFAILPVRSSQFAAGFDLASAYDYVVPARGKCLVKTDLAVAVPHGYYGRVAPRSGLAVKNFIDVGAG VVDSDYRGNLGVLLFNHGDEDFKIARGDRIAQFVIEQIALPDIVEVDDLDETERGAGGFGSTGVKSK ; _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 6MJK _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 9 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 155 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A0A1Z0YU86 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 147 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 147 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 6MJK MET A 1 ? UNP A0A1Z0YU86 ? ? 'expression tag' -7 1 1 6MJK ALA A 2 ? UNP A0A1Z0YU86 ? ? 'expression tag' -6 2 1 6MJK HIS A 3 ? UNP A0A1Z0YU86 ? ? 'expression tag' -5 3 1 6MJK HIS A 4 ? UNP A0A1Z0YU86 ? ? 'expression tag' -4 4 1 6MJK HIS A 5 ? UNP A0A1Z0YU86 ? ? 'expression tag' -3 5 1 6MJK HIS A 6 ? UNP A0A1Z0YU86 ? ? 'expression tag' -2 6 1 6MJK HIS A 7 ? UNP A0A1Z0YU86 ? ? 'expression tag' -1 7 1 6MJK HIS A 8 ? UNP A0A1Z0YU86 ? ? 'expression tag' 0 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DUR non-polymer . "2'-DEOXYURIDINE" ? 'C9 H12 N2 O5' 228.202 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PPV non-polymer . PYROPHOSPHATE ? 'H4 O7 P2' 177.975 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 6MJK _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 39.22 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 290 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details ;JCSG+ C6: 40% PEG 300 + 100mM Sodium phosphate dibasic / sodium citrate pH 4.2:cryo:direct. PW37974 22.5mg/mL, 0.4+0.4, 6 mM dUTP + 6 mM MgCl2 puck xbp1-8, tray286723C6 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details 'Beryllium Lenses' _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'RAYONIX MX-300' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-03-15 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator 'Diamond [111]' _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97856 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'APS BEAMLINE 21-ID-F' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.97856 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline 21-ID-F _diffrn_source.pdbx_synchrotron_site APS # _reflns.B_iso_Wilson_estimate 21.781 _reflns.entry_id 6MJK _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.450 _reflns.d_resolution_low 33.197 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 24498 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100.000 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 16.992 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 46.350 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 1.034 _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.041 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 416266 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 1.000 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.450 1.490 ? 5.790 ? ? ? ? 1801 100.000 ? ? ? ? 0.497 ? ? ? ? ? ? ? ? 16.977 ? ? ? ? 0.512 ? ? 1 1 0.959 ? 1.490 1.530 ? 7.220 ? ? ? ? 1737 100.000 ? ? ? ? 0.415 ? ? ? ? ? ? ? ? 16.874 ? ? ? ? 0.427 ? ? 2 1 0.974 ? 1.530 1.570 ? 9.200 ? ? ? ? 1698 100.000 ? ? ? ? 0.325 ? ? ? ? ? ? ? ? 17.005 ? ? ? ? 0.335 ? ? 3 1 0.983 ? 1.570 1.620 ? 12.000 ? ? ? ? 1668 100.000 ? ? ? ? 0.250 ? ? ? ? ? ? ? ? 17.071 ? ? ? ? 0.258 ? ? 4 1 0.988 ? 1.620 1.670 ? 15.600 ? ? ? ? 1586 100.000 ? ? ? ? 0.195 ? ? ? ? ? ? ? ? 17.159 ? ? ? ? 0.201 ? ? 5 1 0.994 ? 1.670 1.730 ? 19.480 ? ? ? ? 1543 100.000 ? ? ? ? 0.157 ? ? ? ? ? ? ? ? 17.148 ? ? ? ? 0.162 ? ? 6 1 0.996 ? 1.730 1.800 ? 24.510 ? ? ? ? 1501 100.000 ? ? ? ? 0.125 ? ? ? ? ? ? ? ? 17.222 ? ? ? ? 0.129 ? ? 7 1 0.997 ? 1.800 1.870 ? 32.510 ? ? ? ? 1444 100.000 ? ? ? ? 0.094 ? ? ? ? ? ? ? ? 17.204 ? ? ? ? 0.096 ? ? 8 1 0.999 ? 1.870 1.960 ? 39.800 ? ? ? ? 1397 100.000 ? ? ? ? 0.075 ? ? ? ? ? ? ? ? 17.107 ? ? ? ? 0.077 ? ? 9 1 0.999 ? 1.960 2.050 ? 50.440 ? ? ? ? 1302 100.000 ? ? ? ? 0.058 ? ? ? ? ? ? ? ? 17.228 ? ? ? ? 0.060 ? ? 10 1 0.999 ? 2.050 2.160 ? 59.890 ? ? ? ? 1265 100.000 ? ? ? ? 0.048 ? ? ? ? ? ? ? ? 17.214 ? ? ? ? 0.049 ? ? 11 1 1.000 ? 2.160 2.290 ? 69.570 ? ? ? ? 1207 100.000 ? ? ? ? 0.041 ? ? ? ? ? ? ? ? 17.017 ? ? ? ? 0.042 ? ? 12 1 1.000 ? 2.290 2.450 ? 76.560 ? ? ? ? 1119 100.000 ? ? ? ? 0.036 ? ? ? ? ? ? ? ? 17.100 ? ? ? ? 0.037 ? ? 13 1 1.000 ? 2.450 2.650 ? 83.900 ? ? ? ? 1059 100.000 ? ? ? ? 0.033 ? ? ? ? ? ? ? ? 16.859 ? ? ? ? 0.034 ? ? 14 1 1.000 ? 2.650 2.900 ? 96.880 ? ? ? ? 971 100.000 ? ? ? ? 0.027 ? ? ? ? ? ? ? ? 17.100 ? ? ? ? 0.028 ? ? 15 1 1.000 ? 2.900 3.240 ? 109.390 ? ? ? ? 887 100.000 ? ? ? ? 0.022 ? ? ? ? ? ? ? ? 17.047 ? ? ? ? 0.023 ? ? 16 1 1.000 ? 3.240 3.740 ? 124.410 ? ? ? ? 789 100.000 ? ? ? ? 0.019 ? ? ? ? ? ? ? ? 16.895 ? ? ? ? 0.019 ? ? 17 1 1.000 ? 3.740 4.590 ? 130.750 ? ? ? ? 670 100.000 ? ? ? ? 0.016 ? ? ? ? ? ? ? ? 16.736 ? ? ? ? 0.017 ? ? 18 1 1.000 ? 4.590 6.480 ? 128.940 ? ? ? ? 533 100.000 ? ? ? ? 0.017 ? ? ? ? ? ? ? ? 16.114 ? ? ? ? 0.018 ? ? 19 1 1.000 ? 6.480 33.197 ? 116.000 ? ? ? ? 321 99.100 ? ? ? ? 0.020 ? ? ? ? ? ? ? ? 13.003 ? ? ? ? 0.021 ? ? 20 1 1.000 ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 6MJK _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.450 _refine.ls_d_res_low 33.197 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24472 _refine.ls_number_reflns_R_free 2039 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.98 _refine.ls_percent_reflns_R_free 8.33 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1369 _refine.ls_R_factor_R_free 0.1698 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1339 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 4OOP _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 15.19 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.10 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1082 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 27 _refine_hist.number_atoms_solvent 166 _refine_hist.number_atoms_total 1275 _refine_hist.d_res_high 1.450 _refine_hist.d_res_low 33.197 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.005 ? 1203 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.783 ? 1652 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.627 ? 461 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.081 ? 186 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.004 ? 233 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error _refine_ls_shell.pdbx_fsc_work _refine_ls_shell.pdbx_fsc_free 'X-RAY DIFFRACTION' 1.4499 1.4837 . . 129 1510 100.00 . . . 0.1827 . 0.1296 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.4837 1.5208 . . 123 1476 100.00 . . . 0.1691 . 0.1252 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5208 1.5619 . . 151 1469 100.00 . . . 0.2019 . 0.1190 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.5619 1.6078 . . 146 1455 100.00 . . . 0.1722 . 0.1200 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6078 1.6597 . . 150 1467 100.00 . . . 0.1875 . 0.1174 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.6597 1.7190 . . 129 1496 100.00 . . . 0.1827 . 0.1154 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7190 1.7879 . . 130 1471 100.00 . . . 0.1747 . 0.1196 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.7879 1.8692 . . 102 1515 100.00 . . . 0.1519 . 0.1237 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.8692 1.9678 . . 127 1494 100.00 . . . 0.1690 . 0.1242 . . . . . . . . . . 'X-RAY DIFFRACTION' 1.9678 2.0910 . . 143 1485 100.00 . . . 0.1576 . 0.1260 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.0910 2.2525 . . 140 1489 100.00 . . . 0.1665 . 0.1280 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.2525 2.4791 . . 153 1500 100.00 . . . 0.1788 . 0.1365 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.4791 2.8376 . . 146 1493 100.00 . . . 0.1602 . 0.1490 . . . . . . . . . . 'X-RAY DIFFRACTION' 2.8376 3.5744 . . 139 1518 100.00 . . . 0.1697 . 0.1429 . . . . . . . . . . 'X-RAY DIFFRACTION' 3.5744 33.2054 . . 131 1595 100.00 . . . 0.1683 . 0.1411 . . . . . . . . . . # _struct.entry_id 6MJK _struct.title 'Crystal Structure of dUTP pyrophosphatase protein, from Naegleria fowleri in complex with deoxyuridine' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 6MJK _struct_keywords.text 'Structural Genomics, Seattle Structural Genomics Center for Infectious Disease, SSGCID, dUTP pyrophosphatase protein, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id ARG _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 74 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id PHE _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 82 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id ARG _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 66 _struct_conf.end_auth_comp_id PHE _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 74 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 E PPV . O11 ? ? A MG 201 A PPV 204 1_555 ? ? ? ? ? ? ? 2.209 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 E PPV . O32 ? ? A MG 201 A PPV 204 1_555 ? ? ? ? ? ? ? 2.004 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 318 7_454 ? ? ? ? ? ? ? 2.051 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O B ? A MG 201 A HOH 341 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 356 10_554 ? ? ? ? ? ? ? 2.150 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 201 A HOH 388 1_555 ? ? ? ? ? ? ? 2.033 ? ? metalc7 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 202 A HOH 309 1_555 ? ? ? ? ? ? ? 2.202 ? ? metalc8 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 202 A HOH 309 10_554 ? ? ? ? ? ? ? 2.202 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 2 ? AA2 ? 4 ? AA3 ? 2 ? AA4 ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? anti-parallel AA2 1 2 ? anti-parallel AA2 2 3 ? anti-parallel AA2 3 4 ? anti-parallel AA3 1 2 ? anti-parallel AA4 1 2 ? anti-parallel AA4 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ARG A 16 ? LYS A 19 ? ARG A 8 LYS A 11 AA1 2 LEU A 59 ? ALA A 62 ? LEU A 51 ALA A 54 AA2 1 PHE A 37 ? ALA A 40 ? PHE A 29 ALA A 32 AA2 2 ARG A 117 ? GLN A 125 ? ARG A 109 GLN A 117 AA2 3 TYR A 67 ? ALA A 72 ? TYR A 59 ALA A 64 AA2 4 VAL A 89 ? VAL A 90 ? VAL A 81 VAL A 82 AA3 1 TYR A 45 ? VAL A 47 ? TYR A 37 VAL A 39 AA3 2 PHE A 110 ? ILE A 112 ? PHE A 102 ILE A 104 AA4 1 LYS A 52 ? LYS A 56 ? LYS A 44 LYS A 48 AA4 2 GLY A 99 ? ASN A 104 ? GLY A 91 ASN A 96 AA4 3 ILE A 83 ? GLY A 86 ? ILE A 75 GLY A 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LYS A 18 ? N LYS A 10 O ALA A 60 ? O ALA A 52 AA2 1 2 N LEU A 39 ? N LEU A 31 O ALA A 119 ? O ALA A 111 AA2 2 3 O VAL A 122 ? O VAL A 114 N ARG A 70 ? N ARG A 62 AA2 3 4 N GLY A 69 ? N GLY A 61 O VAL A 90 ? O VAL A 82 AA3 1 2 N VAL A 47 ? N VAL A 39 O PHE A 110 ? O PHE A 102 AA4 1 2 N VAL A 55 ? N VAL A 47 O VAL A 100 ? O VAL A 92 AA4 2 3 O PHE A 103 ? O PHE A 95 N ASP A 84 ? N ASP A 76 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 201 ? 6 'binding site for residue MG A 201' AC2 Software A MG 202 ? 3 'binding site for residue MG A 202' AC3 Software A DUR 203 ? 12 'binding site for residue DUR A 203' AC4 Software A PPV 204 ? 13 'binding site for residue PPV A 204' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 SER A 30 ? SER A 22 . ? 7_454 ? 2 AC1 6 PPV E . ? PPV A 204 . ? 1_555 ? 3 AC1 6 HOH F . ? HOH A 318 . ? 7_454 ? 4 AC1 6 HOH F . ? HOH A 341 . ? 1_555 ? 5 AC1 6 HOH F . ? HOH A 356 . ? 10_554 ? 6 AC1 6 HOH F . ? HOH A 388 . ? 1_555 ? 7 AC2 3 HOH F . ? HOH A 309 . ? 10_554 ? 8 AC2 3 HOH F . ? HOH A 309 . ? 7_454 ? 9 AC2 3 HOH F . ? HOH A 309 . ? 1_555 ? 10 AC3 12 SER A 75 ? SER A 67 . ? 7_454 ? 11 AC3 12 ALA A 87 ? ALA A 79 . ? 1_555 ? 12 AC3 12 GLY A 88 ? GLY A 80 . ? 1_555 ? 13 AC3 12 VAL A 89 ? VAL A 81 . ? 1_555 ? 14 AC3 12 ASP A 91 ? ASP A 83 . ? 1_555 ? 15 AC3 12 TYR A 94 ? TYR A 86 . ? 1_555 ? 16 AC3 12 GLY A 99 ? GLY A 91 . ? 1_555 ? 17 AC3 12 GLY A 146 ? GLY A 138 . ? 10_554 ? 18 AC3 12 PHE A 147 ? PHE A 139 . ? 10_554 ? 19 AC3 12 PPV E . ? PPV A 204 . ? 1_555 ? 20 AC3 12 HOH F . ? HOH A 314 . ? 1_555 ? 21 AC3 12 HOH F . ? HOH A 341 . ? 1_555 ? 22 AC4 13 ARG A 74 ? ARG A 66 . ? 7_454 ? 23 AC4 13 SER A 75 ? SER A 67 . ? 7_454 ? 24 AC4 13 GLY A 76 ? GLY A 68 . ? 7_454 ? 25 AC4 13 ARG A 142 ? ARG A 134 . ? 10_554 ? 26 AC4 13 PHE A 147 ? PHE A 139 . ? 10_554 ? 27 AC4 13 GLY A 148 ? GLY A 140 . ? 10_554 ? 28 AC4 13 SER A 149 ? SER A 141 . ? 10_554 ? 29 AC4 13 THR A 150 ? THR A 142 . ? 10_554 ? 30 AC4 13 MG B . ? MG A 201 . ? 1_555 ? 31 AC4 13 DUR D . ? DUR A 203 . ? 1_555 ? 32 AC4 13 HOH F . ? HOH A 356 . ? 10_554 ? 33 AC4 13 HOH F . ? HOH A 388 . ? 1_555 ? 34 AC4 13 HOH F . ? HOH A 399 . ? 7_454 ? # _atom_sites.entry_id 6MJK _atom_sites.fract_transf_matrix[1][1] 0.013472 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013472 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013472 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -7 ? ? ? A . n A 1 2 ALA 2 -6 ? ? ? A . n A 1 3 HIS 3 -5 ? ? ? A . n A 1 4 HIS 4 -4 ? ? ? A . n A 1 5 HIS 5 -3 ? ? ? A . n A 1 6 HIS 6 -2 ? ? ? A . n A 1 7 HIS 7 -1 -1 HIS HIS A . n A 1 8 HIS 8 0 0 HIS HIS A . n A 1 9 MET 9 1 1 MET MET A . n A 1 10 SER 10 2 2 SER SER A . n A 1 11 THR 11 3 3 THR THR A . n A 1 12 PRO 12 4 4 PRO PRO A . n A 1 13 GLN 13 5 5 GLN GLN A . n A 1 14 LEU 14 6 6 LEU LEU A . n A 1 15 MET 15 7 7 MET MET A . n A 1 16 ARG 16 8 8 ARG ARG A . n A 1 17 VAL 17 9 9 VAL VAL A . n A 1 18 LYS 18 10 10 LYS LYS A . n A 1 19 LYS 19 11 11 LYS LYS A . n A 1 20 LEU 20 12 12 LEU LEU A . n A 1 21 SER 21 13 13 SER SER A . n A 1 22 GLU 22 14 14 GLU GLU A . n A 1 23 PHE 23 15 15 PHE PHE A . n A 1 24 ALA 24 16 16 ALA ALA A . n A 1 25 ILE 25 17 17 ILE ILE A . n A 1 26 LEU 26 18 18 LEU LEU A . n A 1 27 PRO 27 19 19 PRO PRO A . n A 1 28 VAL 28 20 20 VAL VAL A . n A 1 29 ARG 29 21 21 ARG ARG A . n A 1 30 SER 30 22 22 SER SER A . n A 1 31 SER 31 23 23 SER SER A . n A 1 32 GLN 32 24 24 GLN GLN A . n A 1 33 PHE 33 25 25 PHE PHE A . n A 1 34 ALA 34 26 26 ALA ALA A . n A 1 35 ALA 35 27 27 ALA ALA A . n A 1 36 GLY 36 28 28 GLY GLY A . n A 1 37 PHE 37 29 29 PHE PHE A . n A 1 38 ASP 38 30 30 ASP ASP A . n A 1 39 LEU 39 31 31 LEU LEU A . n A 1 40 ALA 40 32 32 ALA ALA A . n A 1 41 SER 41 33 33 SER SER A . n A 1 42 ALA 42 34 34 ALA ALA A . n A 1 43 TYR 43 35 35 TYR TYR A . n A 1 44 ASP 44 36 36 ASP ASP A . n A 1 45 TYR 45 37 37 TYR TYR A . n A 1 46 VAL 46 38 38 VAL VAL A . n A 1 47 VAL 47 39 39 VAL VAL A . n A 1 48 PRO 48 40 40 PRO PRO A . n A 1 49 ALA 49 41 41 ALA ALA A . n A 1 50 ARG 50 42 42 ARG ARG A . n A 1 51 GLY 51 43 43 GLY GLY A . n A 1 52 LYS 52 44 44 LYS LYS A . n A 1 53 CYS 53 45 45 CYS CYS A . n A 1 54 LEU 54 46 46 LEU LEU A . n A 1 55 VAL 55 47 47 VAL VAL A . n A 1 56 LYS 56 48 48 LYS LYS A . n A 1 57 THR 57 49 49 THR THR A . n A 1 58 ASP 58 50 50 ASP ASP A . n A 1 59 LEU 59 51 51 LEU LEU A . n A 1 60 ALA 60 52 52 ALA ALA A . n A 1 61 VAL 61 53 53 VAL VAL A . n A 1 62 ALA 62 54 54 ALA ALA A . n A 1 63 VAL 63 55 55 VAL VAL A . n A 1 64 PRO 64 56 56 PRO PRO A . n A 1 65 HIS 65 57 57 HIS HIS A . n A 1 66 GLY 66 58 58 GLY GLY A . n A 1 67 TYR 67 59 59 TYR TYR A . n A 1 68 TYR 68 60 60 TYR TYR A . n A 1 69 GLY 69 61 61 GLY GLY A . n A 1 70 ARG 70 62 62 ARG ARG A . n A 1 71 VAL 71 63 63 VAL VAL A . n A 1 72 ALA 72 64 64 ALA ALA A . n A 1 73 PRO 73 65 65 PRO PRO A . n A 1 74 ARG 74 66 66 ARG ARG A . n A 1 75 SER 75 67 67 SER SER A . n A 1 76 GLY 76 68 68 GLY GLY A . n A 1 77 LEU 77 69 69 LEU LEU A . n A 1 78 ALA 78 70 70 ALA ALA A . n A 1 79 VAL 79 71 71 VAL VAL A . n A 1 80 LYS 80 72 72 LYS LYS A . n A 1 81 ASN 81 73 73 ASN ASN A . n A 1 82 PHE 82 74 74 PHE PHE A . n A 1 83 ILE 83 75 75 ILE ILE A . n A 1 84 ASP 84 76 76 ASP ASP A . n A 1 85 VAL 85 77 77 VAL VAL A . n A 1 86 GLY 86 78 78 GLY GLY A . n A 1 87 ALA 87 79 79 ALA ALA A . n A 1 88 GLY 88 80 80 GLY GLY A . n A 1 89 VAL 89 81 81 VAL VAL A . n A 1 90 VAL 90 82 82 VAL VAL A . n A 1 91 ASP 91 83 83 ASP ASP A . n A 1 92 SER 92 84 84 SER SER A . n A 1 93 ASP 93 85 85 ASP ASP A . n A 1 94 TYR 94 86 86 TYR TYR A . n A 1 95 ARG 95 87 87 ARG ARG A . n A 1 96 GLY 96 88 88 GLY GLY A . n A 1 97 ASN 97 89 89 ASN ASN A . n A 1 98 LEU 98 90 90 LEU LEU A . n A 1 99 GLY 99 91 91 GLY GLY A . n A 1 100 VAL 100 92 92 VAL VAL A . n A 1 101 LEU 101 93 93 LEU LEU A . n A 1 102 LEU 102 94 94 LEU LEU A . n A 1 103 PHE 103 95 95 PHE PHE A . n A 1 104 ASN 104 96 96 ASN ASN A . n A 1 105 HIS 105 97 97 HIS HIS A . n A 1 106 GLY 106 98 98 GLY GLY A . n A 1 107 ASP 107 99 99 ASP ASP A . n A 1 108 GLU 108 100 100 GLU GLU A . n A 1 109 ASP 109 101 101 ASP ASP A . n A 1 110 PHE 110 102 102 PHE PHE A . n A 1 111 LYS 111 103 103 LYS LYS A . n A 1 112 ILE 112 104 104 ILE ILE A . n A 1 113 ALA 113 105 105 ALA ALA A . n A 1 114 ARG 114 106 106 ARG ARG A . n A 1 115 GLY 115 107 107 GLY GLY A . n A 1 116 ASP 116 108 108 ASP ASP A . n A 1 117 ARG 117 109 109 ARG ARG A . n A 1 118 ILE 118 110 110 ILE ILE A . n A 1 119 ALA 119 111 111 ALA ALA A . n A 1 120 GLN 120 112 112 GLN GLN A . n A 1 121 PHE 121 113 113 PHE PHE A . n A 1 122 VAL 122 114 114 VAL VAL A . n A 1 123 ILE 123 115 115 ILE ILE A . n A 1 124 GLU 124 116 116 GLU GLU A . n A 1 125 GLN 125 117 117 GLN GLN A . n A 1 126 ILE 126 118 118 ILE ILE A . n A 1 127 ALA 127 119 119 ALA ALA A . n A 1 128 LEU 128 120 120 LEU LEU A . n A 1 129 PRO 129 121 121 PRO PRO A . n A 1 130 ASP 130 122 122 ASP ASP A . n A 1 131 ILE 131 123 123 ILE ILE A . n A 1 132 VAL 132 124 124 VAL VAL A . n A 1 133 GLU 133 125 125 GLU GLU A . n A 1 134 VAL 134 126 126 VAL VAL A . n A 1 135 ASP 135 127 127 ASP ASP A . n A 1 136 ASP 136 128 128 ASP ASP A . n A 1 137 LEU 137 129 129 LEU LEU A . n A 1 138 ASP 138 130 130 ASP ASP A . n A 1 139 GLU 139 131 131 GLU GLU A . n A 1 140 THR 140 132 132 THR THR A . n A 1 141 GLU 141 133 133 GLU GLU A . n A 1 142 ARG 142 134 134 ARG ARG A . n A 1 143 GLY 143 135 135 GLY GLY A . n A 1 144 ALA 144 136 136 ALA ALA A . n A 1 145 GLY 145 137 137 GLY GLY A . n A 1 146 GLY 146 138 138 GLY GLY A . n A 1 147 PHE 147 139 139 PHE PHE A . n A 1 148 GLY 148 140 140 GLY GLY A . n A 1 149 SER 149 141 141 SER SER A . n A 1 150 THR 150 142 142 THR THR A . n A 1 151 GLY 151 143 ? ? ? A . n A 1 152 VAL 152 144 ? ? ? A . n A 1 153 LYS 153 145 ? ? ? A . n A 1 154 SER 154 146 ? ? ? A . n A 1 155 LYS 155 147 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'NIAID, National Institute of Allergy and Infectious Diseases' _pdbx_SG_project.full_name_of_center 'Seattle Structural Genomics Center for Infectious Disease' _pdbx_SG_project.initial_of_center SSGCID # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 2 MG 1 202 202 MG MG A . D 3 DUR 1 203 301 DUR DUR A . E 4 PPV 1 204 201 PPV PPV A . F 5 HOH 1 301 111 HOH HOH A . F 5 HOH 2 302 125 HOH HOH A . F 5 HOH 3 303 60 HOH HOH A . F 5 HOH 4 304 145 HOH HOH A . F 5 HOH 5 305 116 HOH HOH A . F 5 HOH 6 306 54 HOH HOH A . F 5 HOH 7 307 66 HOH HOH A . F 5 HOH 8 308 147 HOH HOH A . F 5 HOH 9 309 68 HOH HOH A . F 5 HOH 10 310 90 HOH HOH A . F 5 HOH 11 311 102 HOH HOH A . F 5 HOH 12 312 150 HOH HOH A . F 5 HOH 13 313 21 HOH HOH A . F 5 HOH 14 314 1 HOH HOH A . F 5 HOH 15 315 7 HOH HOH A . F 5 HOH 16 316 86 HOH HOH A . F 5 HOH 17 317 82 HOH HOH A . F 5 HOH 18 318 135 HOH HOH A . F 5 HOH 19 319 64 HOH HOH A . F 5 HOH 20 320 74 HOH HOH A . F 5 HOH 21 321 77 HOH HOH A . F 5 HOH 22 322 83 HOH HOH A . F 5 HOH 23 323 35 HOH HOH A . F 5 HOH 24 324 168 HOH HOH A . F 5 HOH 25 325 155 HOH HOH A . F 5 HOH 26 326 161 HOH HOH A . F 5 HOH 27 327 3 HOH HOH A . F 5 HOH 28 328 88 HOH HOH A . F 5 HOH 29 329 73 HOH HOH A . F 5 HOH 30 330 118 HOH HOH A . F 5 HOH 31 331 104 HOH HOH A . F 5 HOH 32 332 71 HOH HOH A . F 5 HOH 33 333 85 HOH HOH A . F 5 HOH 34 334 44 HOH HOH A . F 5 HOH 35 335 15 HOH HOH A . F 5 HOH 36 336 32 HOH HOH A . F 5 HOH 37 337 120 HOH HOH A . F 5 HOH 38 338 6 HOH HOH A . F 5 HOH 39 339 142 HOH HOH A . F 5 HOH 40 340 38 HOH HOH A . F 5 HOH 41 341 166 HOH HOH A . F 5 HOH 42 342 28 HOH HOH A . F 5 HOH 43 343 10 HOH HOH A . F 5 HOH 44 344 14 HOH HOH A . F 5 HOH 45 345 84 HOH HOH A . F 5 HOH 46 346 12 HOH HOH A . F 5 HOH 47 347 87 HOH HOH A . F 5 HOH 48 348 61 HOH HOH A . F 5 HOH 49 349 19 HOH HOH A . F 5 HOH 50 350 29 HOH HOH A . F 5 HOH 51 351 171 HOH HOH A . F 5 HOH 52 352 39 HOH HOH A . F 5 HOH 53 353 2 HOH HOH A . F 5 HOH 54 354 24 HOH HOH A . F 5 HOH 55 355 80 HOH HOH A . F 5 HOH 56 356 143 HOH HOH A . F 5 HOH 57 357 79 HOH HOH A . F 5 HOH 58 358 49 HOH HOH A . F 5 HOH 59 359 91 HOH HOH A . F 5 HOH 60 360 78 HOH HOH A . F 5 HOH 61 361 75 HOH HOH A . F 5 HOH 62 362 95 HOH HOH A . F 5 HOH 63 363 22 HOH HOH A . F 5 HOH 64 364 13 HOH HOH A . F 5 HOH 65 365 11 HOH HOH A . F 5 HOH 66 366 45 HOH HOH A . F 5 HOH 67 367 65 HOH HOH A . F 5 HOH 68 368 93 HOH HOH A . F 5 HOH 69 369 128 HOH HOH A . F 5 HOH 70 370 18 HOH HOH A . F 5 HOH 71 371 57 HOH HOH A . F 5 HOH 72 372 81 HOH HOH A . F 5 HOH 73 373 98 HOH HOH A . F 5 HOH 74 374 26 HOH HOH A . F 5 HOH 75 375 113 HOH HOH A . F 5 HOH 76 376 4 HOH HOH A . F 5 HOH 77 377 122 HOH HOH A . F 5 HOH 78 378 169 HOH HOH A . F 5 HOH 79 379 97 HOH HOH A . F 5 HOH 80 380 8 HOH HOH A . F 5 HOH 81 381 5 HOH HOH A . F 5 HOH 82 382 27 HOH HOH A . F 5 HOH 83 383 89 HOH HOH A . F 5 HOH 84 384 58 HOH HOH A . F 5 HOH 85 385 9 HOH HOH A . F 5 HOH 86 386 110 HOH HOH A . F 5 HOH 87 387 31 HOH HOH A . F 5 HOH 88 388 136 HOH HOH A . F 5 HOH 89 389 33 HOH HOH A . F 5 HOH 90 390 50 HOH HOH A . F 5 HOH 91 391 47 HOH HOH A . F 5 HOH 92 392 30 HOH HOH A . F 5 HOH 93 393 67 HOH HOH A . F 5 HOH 94 394 160 HOH HOH A . F 5 HOH 95 395 70 HOH HOH A . F 5 HOH 96 396 1 HOH HOH A . F 5 HOH 97 397 25 HOH HOH A . F 5 HOH 98 398 52 HOH HOH A . F 5 HOH 99 399 133 HOH HOH A . F 5 HOH 100 400 124 HOH HOH A . F 5 HOH 101 401 41 HOH HOH A . F 5 HOH 102 402 37 HOH HOH A . F 5 HOH 103 403 40 HOH HOH A . F 5 HOH 104 404 43 HOH HOH A . F 5 HOH 105 405 69 HOH HOH A . F 5 HOH 106 406 121 HOH HOH A . F 5 HOH 107 407 56 HOH HOH A . F 5 HOH 108 408 55 HOH HOH A . F 5 HOH 109 409 144 HOH HOH A . F 5 HOH 110 410 131 HOH HOH A . F 5 HOH 111 411 59 HOH HOH A . F 5 HOH 112 412 103 HOH HOH A . F 5 HOH 113 413 16 HOH HOH A . F 5 HOH 114 414 148 HOH HOH A . F 5 HOH 115 415 23 HOH HOH A . F 5 HOH 116 416 159 HOH HOH A . F 5 HOH 117 417 34 HOH HOH A . F 5 HOH 118 418 151 HOH HOH A . F 5 HOH 119 419 129 HOH HOH A . F 5 HOH 120 420 163 HOH HOH A . F 5 HOH 121 421 112 HOH HOH A . F 5 HOH 122 422 51 HOH HOH A . F 5 HOH 123 423 170 HOH HOH A . F 5 HOH 124 424 138 HOH HOH A . F 5 HOH 125 425 53 HOH HOH A . F 5 HOH 126 426 92 HOH HOH A . F 5 HOH 127 427 127 HOH HOH A . F 5 HOH 128 428 105 HOH HOH A . F 5 HOH 129 429 115 HOH HOH A . F 5 HOH 130 430 96 HOH HOH A . F 5 HOH 131 431 172 HOH HOH A . F 5 HOH 132 432 154 HOH HOH A . F 5 HOH 133 433 174 HOH HOH A . F 5 HOH 134 434 165 HOH HOH A . F 5 HOH 135 435 114 HOH HOH A . F 5 HOH 136 436 139 HOH HOH A . F 5 HOH 137 437 157 HOH HOH A . F 5 HOH 138 438 72 HOH HOH A . F 5 HOH 139 439 94 HOH HOH A . F 5 HOH 140 440 109 HOH HOH A . F 5 HOH 141 441 141 HOH HOH A . F 5 HOH 142 442 167 HOH HOH A . F 5 HOH 143 443 62 HOH HOH A . F 5 HOH 144 444 117 HOH HOH A . F 5 HOH 145 445 126 HOH HOH A . F 5 HOH 146 446 107 HOH HOH A . F 5 HOH 147 447 158 HOH HOH A . F 5 HOH 148 448 123 HOH HOH A . F 5 HOH 149 449 119 HOH HOH A . F 5 HOH 150 450 108 HOH HOH A . F 5 HOH 151 451 146 HOH HOH A . F 5 HOH 152 452 106 HOH HOH A . F 5 HOH 153 453 76 HOH HOH A . F 5 HOH 154 454 137 HOH HOH A . F 5 HOH 155 455 48 HOH HOH A . F 5 HOH 156 456 46 HOH HOH A . F 5 HOH 157 457 36 HOH HOH A . F 5 HOH 158 458 164 HOH HOH A . F 5 HOH 159 459 63 HOH HOH A . F 5 HOH 160 460 140 HOH HOH A . F 5 HOH 161 461 20 HOH HOH A . F 5 HOH 162 462 173 HOH HOH A . F 5 HOH 163 463 42 HOH HOH A . F 5 HOH 164 464 152 HOH HOH A . F 5 HOH 165 465 130 HOH HOH A . F 5 HOH 166 466 100 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 202 ? C MG . 2 1 A HOH 359 ? F HOH . 3 1 A HOH 413 ? F HOH . 4 1 A HOH 431 ? F HOH . 5 1 A HOH 439 ? F HOH . 6 1 A HOH 461 ? F HOH . 7 1 A HOH 463 ? F HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O11 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O32 ? E PPV . ? A PPV 204 ? 1_555 87.3 ? 2 O11 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 318 ? 7_454 167.9 ? 3 O32 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 318 ? 7_454 104.8 ? 4 O11 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O B F HOH . ? A HOH 341 ? 1_555 96.0 ? 5 O32 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O B F HOH . ? A HOH 341 ? 1_555 91.8 ? 6 O ? F HOH . ? A HOH 318 ? 7_454 MG ? B MG . ? A MG 201 ? 1_555 O B F HOH . ? A HOH 341 ? 1_555 83.7 ? 7 O11 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 356 ? 10_554 91.1 ? 8 O32 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 356 ? 10_554 92.6 ? 9 O ? F HOH . ? A HOH 318 ? 7_454 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 356 ? 10_554 88.4 ? 10 O B F HOH . ? A HOH 341 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 356 ? 10_554 171.8 ? 11 O11 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 388 ? 1_555 86.1 ? 12 O32 ? E PPV . ? A PPV 204 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 388 ? 1_555 171.5 ? 13 O ? F HOH . ? A HOH 318 ? 7_454 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 388 ? 1_555 81.8 ? 14 O B F HOH . ? A HOH 341 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 388 ? 1_555 94.3 ? 15 O ? F HOH . ? A HOH 356 ? 10_554 MG ? B MG . ? A MG 201 ? 1_555 O ? F HOH . ? A HOH 388 ? 1_555 82.1 ? 16 O ? F HOH . ? A HOH 309 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? F HOH . ? A HOH 309 ? 10_554 97.5 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-10-31 2 'Structure model' 1 1 2023-10-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 9 2 'Structure model' '_pdbx_struct_conn_angle.value' 10 2 'Structure model' '_struct_conn.pdbx_dist_value' 11 2 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 12 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 13 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 14 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 2 'Structure model' '_struct_conn.ptnr2_symmetry' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.14rc2_3191: ???)' 1 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? XSCALE ? ? ? . 2 ? 'data extraction' ? ? ? ? ? ? ? ? ? ? ? PDB_EXTRACT ? ? ? 3.24 3 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 4 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NE2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLN _pdbx_validate_close_contact.auth_seq_id_1 5 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 B _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 301 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 79 ? ? 52.90 -124.72 2 1 PHE A 139 ? ? 62.79 61.20 # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 464 ? 6.22 . 2 1 O ? A HOH 465 ? 6.35 . 3 1 O ? A HOH 466 ? 6.38 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A HIS -1 ? CG ? A HIS 7 CG 2 1 Y 1 A HIS -1 ? ND1 ? A HIS 7 ND1 3 1 Y 1 A HIS -1 ? CD2 ? A HIS 7 CD2 4 1 Y 1 A HIS -1 ? CE1 ? A HIS 7 CE1 5 1 Y 1 A HIS -1 ? NE2 ? A HIS 7 NE2 6 1 Y 1 A HIS 0 ? CG ? A HIS 8 CG 7 1 Y 1 A HIS 0 ? ND1 ? A HIS 8 ND1 8 1 Y 1 A HIS 0 ? CD2 ? A HIS 8 CD2 9 1 Y 1 A HIS 0 ? CE1 ? A HIS 8 CE1 10 1 Y 1 A HIS 0 ? NE2 ? A HIS 8 NE2 11 1 Y 1 A LYS 103 ? CG ? A LYS 111 CG 12 1 Y 1 A LYS 103 ? CD ? A LYS 111 CD 13 1 Y 1 A LYS 103 ? CE ? A LYS 111 CE 14 1 Y 1 A LYS 103 ? NZ ? A LYS 111 NZ 15 1 Y 1 A ASP 128 ? CG ? A ASP 136 CG 16 1 Y 1 A ASP 128 ? OD1 ? A ASP 136 OD1 17 1 Y 1 A ASP 128 ? OD2 ? A ASP 136 OD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -7 ? A MET 1 2 1 Y 1 A ALA -6 ? A ALA 2 3 1 Y 1 A HIS -5 ? A HIS 3 4 1 Y 1 A HIS -4 ? A HIS 4 5 1 Y 1 A HIS -3 ? A HIS 5 6 1 Y 1 A HIS -2 ? A HIS 6 7 1 Y 1 A GLY 143 ? A GLY 151 8 1 Y 1 A VAL 144 ? A VAL 152 9 1 Y 1 A LYS 145 ? A LYS 153 10 1 Y 1 A SER 146 ? A SER 154 11 1 Y 1 A LYS 147 ? A LYS 155 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DUR N1 N N N 88 DUR C2 C N N 89 DUR N3 N N N 90 DUR C4 C N N 91 DUR C5 C N N 92 DUR C6 C N N 93 DUR O2 O N N 94 DUR O4 O N N 95 DUR "C1'" C N R 96 DUR "C2'" C N N 97 DUR "C3'" C N S 98 DUR "C4'" C N R 99 DUR "O3'" O N N 100 DUR "O4'" O N N 101 DUR "C5'" C N N 102 DUR "O5'" O N N 103 DUR HN3 H N N 104 DUR H5 H N N 105 DUR H6 H N N 106 DUR "H1'" H N N 107 DUR "H2'1" H N N 108 DUR "H2'2" H N N 109 DUR "H3'" H N N 110 DUR "H4'" H N N 111 DUR "HO3'" H N N 112 DUR "H5'1" H N N 113 DUR "H5'2" H N N 114 DUR "HO5'" H N N 115 GLN N N N N 116 GLN CA C N S 117 GLN C C N N 118 GLN O O N N 119 GLN CB C N N 120 GLN CG C N N 121 GLN CD C N N 122 GLN OE1 O N N 123 GLN NE2 N N N 124 GLN OXT O N N 125 GLN H H N N 126 GLN H2 H N N 127 GLN HA H N N 128 GLN HB2 H N N 129 GLN HB3 H N N 130 GLN HG2 H N N 131 GLN HG3 H N N 132 GLN HE21 H N N 133 GLN HE22 H N N 134 GLN HXT H N N 135 GLU N N N N 136 GLU CA C N S 137 GLU C C N N 138 GLU O O N N 139 GLU CB C N N 140 GLU CG C N N 141 GLU CD C N N 142 GLU OE1 O N N 143 GLU OE2 O N N 144 GLU OXT O N N 145 GLU H H N N 146 GLU H2 H N N 147 GLU HA H N N 148 GLU HB2 H N N 149 GLU HB3 H N N 150 GLU HG2 H N N 151 GLU HG3 H N N 152 GLU HE2 H N N 153 GLU HXT H N N 154 GLY N N N N 155 GLY CA C N N 156 GLY C C N N 157 GLY O O N N 158 GLY OXT O N N 159 GLY H H N N 160 GLY H2 H N N 161 GLY HA2 H N N 162 GLY HA3 H N N 163 GLY HXT H N N 164 HIS N N N N 165 HIS CA C N S 166 HIS C C N N 167 HIS O O N N 168 HIS CB C N N 169 HIS CG C Y N 170 HIS ND1 N Y N 171 HIS CD2 C Y N 172 HIS CE1 C Y N 173 HIS NE2 N Y N 174 HIS OXT O N N 175 HIS H H N N 176 HIS H2 H N N 177 HIS HA H N N 178 HIS HB2 H N N 179 HIS HB3 H N N 180 HIS HD1 H N N 181 HIS HD2 H N N 182 HIS HE1 H N N 183 HIS HE2 H N N 184 HIS HXT H N N 185 HOH O O N N 186 HOH H1 H N N 187 HOH H2 H N N 188 ILE N N N N 189 ILE CA C N S 190 ILE C C N N 191 ILE O O N N 192 ILE CB C N S 193 ILE CG1 C N N 194 ILE CG2 C N N 195 ILE CD1 C N N 196 ILE OXT O N N 197 ILE H H N N 198 ILE H2 H N N 199 ILE HA H N N 200 ILE HB H N N 201 ILE HG12 H N N 202 ILE HG13 H N N 203 ILE HG21 H N N 204 ILE HG22 H N N 205 ILE HG23 H N N 206 ILE HD11 H N N 207 ILE HD12 H N N 208 ILE HD13 H N N 209 ILE HXT H N N 210 LEU N N N N 211 LEU CA C N S 212 LEU C C N N 213 LEU O O N N 214 LEU CB C N N 215 LEU CG C N N 216 LEU CD1 C N N 217 LEU CD2 C N N 218 LEU OXT O N N 219 LEU H H N N 220 LEU H2 H N N 221 LEU HA H N N 222 LEU HB2 H N N 223 LEU HB3 H N N 224 LEU HG H N N 225 LEU HD11 H N N 226 LEU HD12 H N N 227 LEU HD13 H N N 228 LEU HD21 H N N 229 LEU HD22 H N N 230 LEU HD23 H N N 231 LEU HXT H N N 232 LYS N N N N 233 LYS CA C N S 234 LYS C C N N 235 LYS O O N N 236 LYS CB C N N 237 LYS CG C N N 238 LYS CD C N N 239 LYS CE C N N 240 LYS NZ N N N 241 LYS OXT O N N 242 LYS H H N N 243 LYS H2 H N N 244 LYS HA H N N 245 LYS HB2 H N N 246 LYS HB3 H N N 247 LYS HG2 H N N 248 LYS HG3 H N N 249 LYS HD2 H N N 250 LYS HD3 H N N 251 LYS HE2 H N N 252 LYS HE3 H N N 253 LYS HZ1 H N N 254 LYS HZ2 H N N 255 LYS HZ3 H N N 256 LYS HXT H N N 257 MET N N N N 258 MET CA C N S 259 MET C C N N 260 MET O O N N 261 MET CB C N N 262 MET CG C N N 263 MET SD S N N 264 MET CE C N N 265 MET OXT O N N 266 MET H H N N 267 MET H2 H N N 268 MET HA H N N 269 MET HB2 H N N 270 MET HB3 H N N 271 MET HG2 H N N 272 MET HG3 H N N 273 MET HE1 H N N 274 MET HE2 H N N 275 MET HE3 H N N 276 MET HXT H N N 277 MG MG MG N N 278 PHE N N N N 279 PHE CA C N S 280 PHE C C N N 281 PHE O O N N 282 PHE CB C N N 283 PHE CG C Y N 284 PHE CD1 C Y N 285 PHE CD2 C Y N 286 PHE CE1 C Y N 287 PHE CE2 C Y N 288 PHE CZ C Y N 289 PHE OXT O N N 290 PHE H H N N 291 PHE H2 H N N 292 PHE HA H N N 293 PHE HB2 H N N 294 PHE HB3 H N N 295 PHE HD1 H N N 296 PHE HD2 H N N 297 PHE HE1 H N N 298 PHE HE2 H N N 299 PHE HZ H N N 300 PHE HXT H N N 301 PPV O11 O N N 302 PPV P1 P N N 303 PPV O21 O N N 304 PPV O31 O N N 305 PPV OPP O N N 306 PPV P2 P N N 307 PPV O12 O N N 308 PPV O22 O N N 309 PPV O32 O N N 310 PPV H11 H N N 311 PPV H21 H N N 312 PPV H12 H N N 313 PPV H32 H N N 314 PRO N N N N 315 PRO CA C N S 316 PRO C C N N 317 PRO O O N N 318 PRO CB C N N 319 PRO CG C N N 320 PRO CD C N N 321 PRO OXT O N N 322 PRO H H N N 323 PRO HA H N N 324 PRO HB2 H N N 325 PRO HB3 H N N 326 PRO HG2 H N N 327 PRO HG3 H N N 328 PRO HD2 H N N 329 PRO HD3 H N N 330 PRO HXT H N N 331 SER N N N N 332 SER CA C N S 333 SER C C N N 334 SER O O N N 335 SER CB C N N 336 SER OG O N N 337 SER OXT O N N 338 SER H H N N 339 SER H2 H N N 340 SER HA H N N 341 SER HB2 H N N 342 SER HB3 H N N 343 SER HG H N N 344 SER HXT H N N 345 THR N N N N 346 THR CA C N S 347 THR C C N N 348 THR O O N N 349 THR CB C N R 350 THR OG1 O N N 351 THR CG2 C N N 352 THR OXT O N N 353 THR H H N N 354 THR H2 H N N 355 THR HA H N N 356 THR HB H N N 357 THR HG1 H N N 358 THR HG21 H N N 359 THR HG22 H N N 360 THR HG23 H N N 361 THR HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DUR N1 C2 sing N N 83 DUR N1 C6 sing N N 84 DUR N1 "C1'" sing N N 85 DUR C2 N3 sing N N 86 DUR C2 O2 doub N N 87 DUR N3 C4 sing N N 88 DUR N3 HN3 sing N N 89 DUR C4 C5 sing N N 90 DUR C4 O4 doub N N 91 DUR C5 C6 doub N N 92 DUR C5 H5 sing N N 93 DUR C6 H6 sing N N 94 DUR "C1'" "C2'" sing N N 95 DUR "C1'" "O4'" sing N N 96 DUR "C1'" "H1'" sing N N 97 DUR "C2'" "C3'" sing N N 98 DUR "C2'" "H2'1" sing N N 99 DUR "C2'" "H2'2" sing N N 100 DUR "C3'" "C4'" sing N N 101 DUR "C3'" "O3'" sing N N 102 DUR "C3'" "H3'" sing N N 103 DUR "C4'" "O4'" sing N N 104 DUR "C4'" "C5'" sing N N 105 DUR "C4'" "H4'" sing N N 106 DUR "O3'" "HO3'" sing N N 107 DUR "C5'" "O5'" sing N N 108 DUR "C5'" "H5'1" sing N N 109 DUR "C5'" "H5'2" sing N N 110 DUR "O5'" "HO5'" sing N N 111 GLN N CA sing N N 112 GLN N H sing N N 113 GLN N H2 sing N N 114 GLN CA C sing N N 115 GLN CA CB sing N N 116 GLN CA HA sing N N 117 GLN C O doub N N 118 GLN C OXT sing N N 119 GLN CB CG sing N N 120 GLN CB HB2 sing N N 121 GLN CB HB3 sing N N 122 GLN CG CD sing N N 123 GLN CG HG2 sing N N 124 GLN CG HG3 sing N N 125 GLN CD OE1 doub N N 126 GLN CD NE2 sing N N 127 GLN NE2 HE21 sing N N 128 GLN NE2 HE22 sing N N 129 GLN OXT HXT sing N N 130 GLU N CA sing N N 131 GLU N H sing N N 132 GLU N H2 sing N N 133 GLU CA C sing N N 134 GLU CA CB sing N N 135 GLU CA HA sing N N 136 GLU C O doub N N 137 GLU C OXT sing N N 138 GLU CB CG sing N N 139 GLU CB HB2 sing N N 140 GLU CB HB3 sing N N 141 GLU CG CD sing N N 142 GLU CG HG2 sing N N 143 GLU CG HG3 sing N N 144 GLU CD OE1 doub N N 145 GLU CD OE2 sing N N 146 GLU OE2 HE2 sing N N 147 GLU OXT HXT sing N N 148 GLY N CA sing N N 149 GLY N H sing N N 150 GLY N H2 sing N N 151 GLY CA C sing N N 152 GLY CA HA2 sing N N 153 GLY CA HA3 sing N N 154 GLY C O doub N N 155 GLY C OXT sing N N 156 GLY OXT HXT sing N N 157 HIS N CA sing N N 158 HIS N H sing N N 159 HIS N H2 sing N N 160 HIS CA C sing N N 161 HIS CA CB sing N N 162 HIS CA HA sing N N 163 HIS C O doub N N 164 HIS C OXT sing N N 165 HIS CB CG sing N N 166 HIS CB HB2 sing N N 167 HIS CB HB3 sing N N 168 HIS CG ND1 sing Y N 169 HIS CG CD2 doub Y N 170 HIS ND1 CE1 doub Y N 171 HIS ND1 HD1 sing N N 172 HIS CD2 NE2 sing Y N 173 HIS CD2 HD2 sing N N 174 HIS CE1 NE2 sing Y N 175 HIS CE1 HE1 sing N N 176 HIS NE2 HE2 sing N N 177 HIS OXT HXT sing N N 178 HOH O H1 sing N N 179 HOH O H2 sing N N 180 ILE N CA sing N N 181 ILE N H sing N N 182 ILE N H2 sing N N 183 ILE CA C sing N N 184 ILE CA CB sing N N 185 ILE CA HA sing N N 186 ILE C O doub N N 187 ILE C OXT sing N N 188 ILE CB CG1 sing N N 189 ILE CB CG2 sing N N 190 ILE CB HB sing N N 191 ILE CG1 CD1 sing N N 192 ILE CG1 HG12 sing N N 193 ILE CG1 HG13 sing N N 194 ILE CG2 HG21 sing N N 195 ILE CG2 HG22 sing N N 196 ILE CG2 HG23 sing N N 197 ILE CD1 HD11 sing N N 198 ILE CD1 HD12 sing N N 199 ILE CD1 HD13 sing N N 200 ILE OXT HXT sing N N 201 LEU N CA sing N N 202 LEU N H sing N N 203 LEU N H2 sing N N 204 LEU CA C sing N N 205 LEU CA CB sing N N 206 LEU CA HA sing N N 207 LEU C O doub N N 208 LEU C OXT sing N N 209 LEU CB CG sing N N 210 LEU CB HB2 sing N N 211 LEU CB HB3 sing N N 212 LEU CG CD1 sing N N 213 LEU CG CD2 sing N N 214 LEU CG HG sing N N 215 LEU CD1 HD11 sing N N 216 LEU CD1 HD12 sing N N 217 LEU CD1 HD13 sing N N 218 LEU CD2 HD21 sing N N 219 LEU CD2 HD22 sing N N 220 LEU CD2 HD23 sing N N 221 LEU OXT HXT sing N N 222 LYS N CA sing N N 223 LYS N H sing N N 224 LYS N H2 sing N N 225 LYS CA C sing N N 226 LYS CA CB sing N N 227 LYS CA HA sing N N 228 LYS C O doub N N 229 LYS C OXT sing N N 230 LYS CB CG sing N N 231 LYS CB HB2 sing N N 232 LYS CB HB3 sing N N 233 LYS CG CD sing N N 234 LYS CG HG2 sing N N 235 LYS CG HG3 sing N N 236 LYS CD CE sing N N 237 LYS CD HD2 sing N N 238 LYS CD HD3 sing N N 239 LYS CE NZ sing N N 240 LYS CE HE2 sing N N 241 LYS CE HE3 sing N N 242 LYS NZ HZ1 sing N N 243 LYS NZ HZ2 sing N N 244 LYS NZ HZ3 sing N N 245 LYS OXT HXT sing N N 246 MET N CA sing N N 247 MET N H sing N N 248 MET N H2 sing N N 249 MET CA C sing N N 250 MET CA CB sing N N 251 MET CA HA sing N N 252 MET C O doub N N 253 MET C OXT sing N N 254 MET CB CG sing N N 255 MET CB HB2 sing N N 256 MET CB HB3 sing N N 257 MET CG SD sing N N 258 MET CG HG2 sing N N 259 MET CG HG3 sing N N 260 MET SD CE sing N N 261 MET CE HE1 sing N N 262 MET CE HE2 sing N N 263 MET CE HE3 sing N N 264 MET OXT HXT sing N N 265 PHE N CA sing N N 266 PHE N H sing N N 267 PHE N H2 sing N N 268 PHE CA C sing N N 269 PHE CA CB sing N N 270 PHE CA HA sing N N 271 PHE C O doub N N 272 PHE C OXT sing N N 273 PHE CB CG sing N N 274 PHE CB HB2 sing N N 275 PHE CB HB3 sing N N 276 PHE CG CD1 doub Y N 277 PHE CG CD2 sing Y N 278 PHE CD1 CE1 sing Y N 279 PHE CD1 HD1 sing N N 280 PHE CD2 CE2 doub Y N 281 PHE CD2 HD2 sing N N 282 PHE CE1 CZ doub Y N 283 PHE CE1 HE1 sing N N 284 PHE CE2 CZ sing Y N 285 PHE CE2 HE2 sing N N 286 PHE CZ HZ sing N N 287 PHE OXT HXT sing N N 288 PPV O11 P1 sing N N 289 PPV O11 H11 sing N N 290 PPV P1 O21 sing N N 291 PPV P1 O31 doub N N 292 PPV P1 OPP sing N N 293 PPV O21 H21 sing N N 294 PPV OPP P2 sing N N 295 PPV P2 O12 sing N N 296 PPV P2 O22 doub N N 297 PPV P2 O32 sing N N 298 PPV O12 H12 sing N N 299 PPV O32 H32 sing N N 300 PRO N CA sing N N 301 PRO N CD sing N N 302 PRO N H sing N N 303 PRO CA C sing N N 304 PRO CA CB sing N N 305 PRO CA HA sing N N 306 PRO C O doub N N 307 PRO C OXT sing N N 308 PRO CB CG sing N N 309 PRO CB HB2 sing N N 310 PRO CB HB3 sing N N 311 PRO CG CD sing N N 312 PRO CG HG2 sing N N 313 PRO CG HG3 sing N N 314 PRO CD HD2 sing N N 315 PRO CD HD3 sing N N 316 PRO OXT HXT sing N N 317 SER N CA sing N N 318 SER N H sing N N 319 SER N H2 sing N N 320 SER CA C sing N N 321 SER CA CB sing N N 322 SER CA HA sing N N 323 SER C O doub N N 324 SER C OXT sing N N 325 SER CB OG sing N N 326 SER CB HB2 sing N N 327 SER CB HB3 sing N N 328 SER OG HG sing N N 329 SER OXT HXT sing N N 330 THR N CA sing N N 331 THR N H sing N N 332 THR N H2 sing N N 333 THR CA C sing N N 334 THR CA CB sing N N 335 THR CA HA sing N N 336 THR C O doub N N 337 THR C OXT sing N N 338 THR CB OG1 sing N N 339 THR CB CG2 sing N N 340 THR CB HB sing N N 341 THR OG1 HG1 sing N N 342 THR CG2 HG21 sing N N 343 THR CG2 HG22 sing N N 344 THR CG2 HG23 sing N N 345 THR OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 "2'-DEOXYURIDINE" DUR 4 PYROPHOSPHATE PPV 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4OOP _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #