HEADER HYDROLASE 25-SEP-18 6MK6 TITLE CARBAPENEMASE VCC-1 FROM VIBRIO CHOLERAE N14-02106 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.5.2.6; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CARBAPENEMASE, VCC-1, VIBRIO CHOLERAE N14-02106, BETA-LACTAMASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR B.L.MARK,G.VADLAMANI REVDAT 5 11-OCT-23 6MK6 1 REMARK REVDAT 4 08-JAN-20 6MK6 1 REMARK REVDAT 3 10-APR-19 6MK6 1 JRNL REVDAT 2 06-MAR-19 6MK6 1 JRNL REVDAT 1 30-JAN-19 6MK6 0 JRNL AUTH C.S.MANGAT,G.VADLAMANI,V.HOLICEK,M.CHU,V.L.C.LARMOUR, JRNL AUTH 2 D.J.VOCADLO,M.R.MULVEY,B.L.MARK JRNL TITL MOLECULAR BASIS FOR THE POTENT INHIBITION OF THE EMERGING JRNL TITL 2 CARBAPENEMASE VCC-1 BY AVIBACTAM. JRNL REF ANTIMICROB. AGENTS V. 63 2019 JRNL REF 2 CHEMOTHER. JRNL REFN ESSN 1098-6596 JRNL PMID 30782990 JRNL DOI 10.1128/AAC.02112-18 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13RC2_2986: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 119330 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.230 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.8196 - 3.6622 0.99 12177 151 0.1487 0.1691 REMARK 3 2 3.6622 - 2.9069 1.00 11934 149 0.1534 0.1931 REMARK 3 3 2.9069 - 2.5394 1.00 11905 148 0.1600 0.2041 REMARK 3 4 2.5394 - 2.3072 1.00 11810 146 0.1683 0.2376 REMARK 3 5 2.3072 - 2.1419 0.99 11742 147 0.1693 0.2126 REMARK 3 6 2.1419 - 2.0156 0.99 11740 146 0.1790 0.2045 REMARK 3 7 2.0156 - 1.9146 0.99 11673 146 0.1852 0.2332 REMARK 3 8 1.9146 - 1.8313 0.99 11677 144 0.1949 0.2249 REMARK 3 9 1.8313 - 1.7608 0.99 11644 146 0.1976 0.2361 REMARK 3 10 1.7608 - 1.7000 0.99 11562 143 0.2056 0.2485 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 8182 REMARK 3 ANGLE : 0.974 11059 REMARK 3 CHIRALITY : 0.056 1210 REMARK 3 PLANARITY : 0.006 1451 REMARK 3 DIHEDRAL : 10.398 4937 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MK6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237092. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 56.060 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1BUE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.7 M NACL, 0.2 M BIS-TRIS PH 5.5 AND REMARK 280 22% PEG 3350 AND 12-18 MG/ML VCC-1, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 104.96500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.32500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 104.96500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.32500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 361 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 465 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1 REMARK 465 GLU A 2 REMARK 465 HIS A 3 REMARK 465 ASP B 1 REMARK 465 GLU B 2 REMARK 465 HIS B 3 REMARK 465 ASN B 4 REMARK 465 LYS B 5 REMARK 465 ASP C 1 REMARK 465 GLU C 2 REMARK 465 HIS C 3 REMARK 465 ASN C 4 REMARK 465 LYS C 5 REMARK 465 ASP D 1 REMARK 465 GLU D 2 REMARK 465 HIS D 3 REMARK 465 ASN D 4 REMARK 465 LYS D 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 120 CD OE1 OE2 REMARK 470 LYS A 214 NZ REMARK 470 GLU A 251 CD OE1 OE2 REMARK 470 LYS A 265 NZ REMARK 470 ASN B 6 CG OD1 ND2 REMARK 470 LYS D 117 NZ REMARK 470 GLU D 251 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN B 175 O HOH B 304 1.51 REMARK 500 HD22 ASN D 170 O HOH D 301 1.56 REMARK 500 OE1 GLU C 11 HH TYR C 33 1.60 REMARK 500 OD1 ASN A 6 O HOH A 301 1.88 REMARK 500 O HOH A 465 O HOH A 570 1.94 REMARK 500 O HOH A 596 O HOH C 578 1.95 REMARK 500 O HOH C 323 O HOH C 496 1.96 REMARK 500 O HOH B 629 O HOH B 631 2.00 REMARK 500 O HOH C 530 O HOH C 583 2.01 REMARK 500 O HOH D 480 O HOH D 612 2.02 REMARK 500 O HOH B 590 O HOH B 635 2.03 REMARK 500 O HOH C 566 O HOH C 571 2.04 REMARK 500 O HOH A 348 O HOH A 582 2.04 REMARK 500 O HOH C 587 O HOH D 580 2.05 REMARK 500 O HOH A 537 O HOH D 604 2.07 REMARK 500 O HOH A 585 O HOH A 625 2.07 REMARK 500 O HOH C 554 O HOH C 600 2.09 REMARK 500 O HOH D 602 O HOH D 619 2.09 REMARK 500 ND2 ASN D 170 O HOH D 301 2.10 REMARK 500 O HOH D 347 O HOH D 592 2.10 REMARK 500 O HOH B 307 O HOH B 530 2.11 REMARK 500 O HOH B 460 O HOH B 485 2.11 REMARK 500 O HOH A 339 O HOH A 565 2.11 REMARK 500 O HOH D 406 O HOH D 441 2.11 REMARK 500 O LYS C 242 O HOH C 301 2.12 REMARK 500 NZ LYS C 214 O HOH C 302 2.12 REMARK 500 OD1 ASN C 170 O HOH C 303 2.12 REMARK 500 O HOH D 526 O HOH D 562 2.13 REMARK 500 O HOH B 474 O HOH B 533 2.14 REMARK 500 O HOH D 461 O HOH D 567 2.14 REMARK 500 OD1 ASP A 59 O HOH A 302 2.15 REMARK 500 O HOH C 501 O HOH C 566 2.16 REMARK 500 O HOH D 470 O HOH D 559 2.16 REMARK 500 O HOH D 496 O HOH D 560 2.16 REMARK 500 OG SER B 87 O HOH B 301 2.18 REMARK 500 O HOH C 350 O HOH C 573 2.18 REMARK 500 O HOH C 560 O HOH C 570 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 388 O HOH B 563 2657 2.04 REMARK 500 O HOH C 448 O HOH D 382 4546 2.07 REMARK 500 O HOH A 402 O HOH D 492 1545 2.09 REMARK 500 O HOH B 627 O HOH C 598 3545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 42 -143.96 52.93 REMARK 500 TYR A 70 47.72 -150.71 REMARK 500 LYS A 117 44.74 76.61 REMARK 500 ASN A 170 61.56 62.17 REMARK 500 THR A 171 -87.36 -112.92 REMARK 500 ARG A 194 -118.03 -116.30 REMARK 500 GLU B 15 74.20 53.31 REMARK 500 CYS B 42 -146.18 49.72 REMARK 500 TYR B 70 42.38 -149.86 REMARK 500 TYR B 115 -62.19 -128.67 REMARK 500 LYS B 117 40.13 75.61 REMARK 500 VAL B 172 -55.96 -130.54 REMARK 500 ARG B 194 -119.71 -119.18 REMARK 500 GLU C 15 66.25 64.00 REMARK 500 CYS C 42 -142.20 47.79 REMARK 500 TYR C 70 42.43 -151.47 REMARK 500 LYS C 117 45.56 74.77 REMARK 500 VAL C 172 -54.99 -128.07 REMARK 500 ARG C 194 -113.65 -112.93 REMARK 500 ASN C 229 18.66 59.83 REMARK 500 CYS D 42 -139.77 51.20 REMARK 500 TYR D 70 43.67 -153.70 REMARK 500 TYR D 115 -51.53 -127.53 REMARK 500 LYS D 117 45.30 77.54 REMARK 500 VAL D 172 -57.49 -133.61 REMARK 500 ARG D 194 -117.04 -115.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 629 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH A 630 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH A 631 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH B 640 DISTANCE = 6.05 ANGSTROMS REMARK 525 HOH B 641 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH B 642 DISTANCE = 6.43 ANGSTROMS REMARK 525 HOH B 643 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B 644 DISTANCE = 6.79 ANGSTROMS REMARK 525 HOH C 624 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH C 625 DISTANCE = 6.09 ANGSTROMS REMARK 525 HOH C 626 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH C 627 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH C 628 DISTANCE = 6.73 ANGSTROMS REMARK 525 HOH C 629 DISTANCE = 7.16 ANGSTROMS REMARK 525 HOH C 630 DISTANCE = 7.50 ANGSTROMS REMARK 525 HOH D 635 DISTANCE = 6.06 ANGSTROMS REMARK 525 HOH D 636 DISTANCE = 6.41 ANGSTROMS DBREF1 6MK6 A 1 265 UNP A0A0U3IB62_VIBCL DBREF2 6MK6 A A0A0U3IB62 20 284 DBREF1 6MK6 B 1 265 UNP A0A0U3IB62_VIBCL DBREF2 6MK6 B A0A0U3IB62 20 284 DBREF1 6MK6 C 1 265 UNP A0A0U3IB62_VIBCL DBREF2 6MK6 C A0A0U3IB62 20 284 DBREF1 6MK6 D 1 265 UNP A0A0U3IB62_VIBCL DBREF2 6MK6 D A0A0U3IB62 20 284 SEQRES 1 A 265 ASP GLU HIS ASN LYS ASN MET ALA ASP ILE GLU ALA ALA SEQRES 2 A 265 PHE GLU GLY ARG VAL GLY VAL TYR ALA ILE ASN THR GLY SEQRES 3 A 265 SER GLY LYS ALA TYR SER TYR ARG ALA ASN GLU ARG PHE SEQRES 4 A 265 PRO LEU CYS SER SER PHE LYS ALA PHE LEU ALA ALA ALA SEQRES 5 A 265 VAL LEU LYS MET ASP GLN ASP SER PRO GLY VAL LEU LEU SEQRES 6 A 265 GLU LYS VAL ASN TYR HIS ASN ARG THR MET GLU PRO HIS SEQRES 7 A 265 SER PRO ILE THR GLU LYS PHE GLN SER GLN GLY MET ALA SEQRES 8 A 265 VAL GLY GLU LEU ALA ALA ALA THR LEU GLN TYR SER ASP SEQRES 9 A 265 ASN GLY ALA ALA ASN LEU LEU MET GLU LYS TYR ILE LYS SEQRES 10 A 265 GLY PRO GLU GLY MET THR GLN PHE MET ASN SER ILE GLY SEQRES 11 A 265 ASP THR LYS PHE ARG LEU ASP ARG TRP GLU LEU ASP LEU SEQRES 12 A 265 ASN SER ALA ILE PRO GLY ASP GLU ARG ASP THR SER THR SEQRES 13 A 265 PRO LYS ALA VAL ALA GLU SER LEU ASN LYS LEU ILE SER SEQRES 14 A 265 ASN THR VAL LEU ASP ASN TYR HIS GLN GLU ILE PHE LYS SEQRES 15 A 265 LYS TRP MET ILE GLY ASN THR THR GLY ASP ASN ARG ILE SEQRES 16 A 265 ARG ALA ALA VAL PRO ASP GLY TRP VAL VAL GLY ASP LYS SEQRES 17 A 265 THR GLY THR CYS GLY LYS TYR GLY THR ALA ASN ASP HIS SEQRES 18 A 265 ALA PHE ILE LEU GLN GLY ASN ASN ALA ALA PRO LEU ILE SEQRES 19 A 265 LEU SER ILE TYR THR THR ARG LYS GLY GLU HIS MET LYS SEQRES 20 A 265 HIS ASP ASP GLU VAL ILE ALA LYS ALA ALA ARG ILE ALA SEQRES 21 A 265 ILE GLU ASN VAL LYS SEQRES 1 B 265 ASP GLU HIS ASN LYS ASN MET ALA ASP ILE GLU ALA ALA SEQRES 2 B 265 PHE GLU GLY ARG VAL GLY VAL TYR ALA ILE ASN THR GLY SEQRES 3 B 265 SER GLY LYS ALA TYR SER TYR ARG ALA ASN GLU ARG PHE SEQRES 4 B 265 PRO LEU CYS SER SER PHE LYS ALA PHE LEU ALA ALA ALA SEQRES 5 B 265 VAL LEU LYS MET ASP GLN ASP SER PRO GLY VAL LEU LEU SEQRES 6 B 265 GLU LYS VAL ASN TYR HIS ASN ARG THR MET GLU PRO HIS SEQRES 7 B 265 SER PRO ILE THR GLU LYS PHE GLN SER GLN GLY MET ALA SEQRES 8 B 265 VAL GLY GLU LEU ALA ALA ALA THR LEU GLN TYR SER ASP SEQRES 9 B 265 ASN GLY ALA ALA ASN LEU LEU MET GLU LYS TYR ILE LYS SEQRES 10 B 265 GLY PRO GLU GLY MET THR GLN PHE MET ASN SER ILE GLY SEQRES 11 B 265 ASP THR LYS PHE ARG LEU ASP ARG TRP GLU LEU ASP LEU SEQRES 12 B 265 ASN SER ALA ILE PRO GLY ASP GLU ARG ASP THR SER THR SEQRES 13 B 265 PRO LYS ALA VAL ALA GLU SER LEU ASN LYS LEU ILE SER SEQRES 14 B 265 ASN THR VAL LEU ASP ASN TYR HIS GLN GLU ILE PHE LYS SEQRES 15 B 265 LYS TRP MET ILE GLY ASN THR THR GLY ASP ASN ARG ILE SEQRES 16 B 265 ARG ALA ALA VAL PRO ASP GLY TRP VAL VAL GLY ASP LYS SEQRES 17 B 265 THR GLY THR CYS GLY LYS TYR GLY THR ALA ASN ASP HIS SEQRES 18 B 265 ALA PHE ILE LEU GLN GLY ASN ASN ALA ALA PRO LEU ILE SEQRES 19 B 265 LEU SER ILE TYR THR THR ARG LYS GLY GLU HIS MET LYS SEQRES 20 B 265 HIS ASP ASP GLU VAL ILE ALA LYS ALA ALA ARG ILE ALA SEQRES 21 B 265 ILE GLU ASN VAL LYS SEQRES 1 C 265 ASP GLU HIS ASN LYS ASN MET ALA ASP ILE GLU ALA ALA SEQRES 2 C 265 PHE GLU GLY ARG VAL GLY VAL TYR ALA ILE ASN THR GLY SEQRES 3 C 265 SER GLY LYS ALA TYR SER TYR ARG ALA ASN GLU ARG PHE SEQRES 4 C 265 PRO LEU CYS SER SER PHE LYS ALA PHE LEU ALA ALA ALA SEQRES 5 C 265 VAL LEU LYS MET ASP GLN ASP SER PRO GLY VAL LEU LEU SEQRES 6 C 265 GLU LYS VAL ASN TYR HIS ASN ARG THR MET GLU PRO HIS SEQRES 7 C 265 SER PRO ILE THR GLU LYS PHE GLN SER GLN GLY MET ALA SEQRES 8 C 265 VAL GLY GLU LEU ALA ALA ALA THR LEU GLN TYR SER ASP SEQRES 9 C 265 ASN GLY ALA ALA ASN LEU LEU MET GLU LYS TYR ILE LYS SEQRES 10 C 265 GLY PRO GLU GLY MET THR GLN PHE MET ASN SER ILE GLY SEQRES 11 C 265 ASP THR LYS PHE ARG LEU ASP ARG TRP GLU LEU ASP LEU SEQRES 12 C 265 ASN SER ALA ILE PRO GLY ASP GLU ARG ASP THR SER THR SEQRES 13 C 265 PRO LYS ALA VAL ALA GLU SER LEU ASN LYS LEU ILE SER SEQRES 14 C 265 ASN THR VAL LEU ASP ASN TYR HIS GLN GLU ILE PHE LYS SEQRES 15 C 265 LYS TRP MET ILE GLY ASN THR THR GLY ASP ASN ARG ILE SEQRES 16 C 265 ARG ALA ALA VAL PRO ASP GLY TRP VAL VAL GLY ASP LYS SEQRES 17 C 265 THR GLY THR CYS GLY LYS TYR GLY THR ALA ASN ASP HIS SEQRES 18 C 265 ALA PHE ILE LEU GLN GLY ASN ASN ALA ALA PRO LEU ILE SEQRES 19 C 265 LEU SER ILE TYR THR THR ARG LYS GLY GLU HIS MET LYS SEQRES 20 C 265 HIS ASP ASP GLU VAL ILE ALA LYS ALA ALA ARG ILE ALA SEQRES 21 C 265 ILE GLU ASN VAL LYS SEQRES 1 D 265 ASP GLU HIS ASN LYS ASN MET ALA ASP ILE GLU ALA ALA SEQRES 2 D 265 PHE GLU GLY ARG VAL GLY VAL TYR ALA ILE ASN THR GLY SEQRES 3 D 265 SER GLY LYS ALA TYR SER TYR ARG ALA ASN GLU ARG PHE SEQRES 4 D 265 PRO LEU CYS SER SER PHE LYS ALA PHE LEU ALA ALA ALA SEQRES 5 D 265 VAL LEU LYS MET ASP GLN ASP SER PRO GLY VAL LEU LEU SEQRES 6 D 265 GLU LYS VAL ASN TYR HIS ASN ARG THR MET GLU PRO HIS SEQRES 7 D 265 SER PRO ILE THR GLU LYS PHE GLN SER GLN GLY MET ALA SEQRES 8 D 265 VAL GLY GLU LEU ALA ALA ALA THR LEU GLN TYR SER ASP SEQRES 9 D 265 ASN GLY ALA ALA ASN LEU LEU MET GLU LYS TYR ILE LYS SEQRES 10 D 265 GLY PRO GLU GLY MET THR GLN PHE MET ASN SER ILE GLY SEQRES 11 D 265 ASP THR LYS PHE ARG LEU ASP ARG TRP GLU LEU ASP LEU SEQRES 12 D 265 ASN SER ALA ILE PRO GLY ASP GLU ARG ASP THR SER THR SEQRES 13 D 265 PRO LYS ALA VAL ALA GLU SER LEU ASN LYS LEU ILE SER SEQRES 14 D 265 ASN THR VAL LEU ASP ASN TYR HIS GLN GLU ILE PHE LYS SEQRES 15 D 265 LYS TRP MET ILE GLY ASN THR THR GLY ASP ASN ARG ILE SEQRES 16 D 265 ARG ALA ALA VAL PRO ASP GLY TRP VAL VAL GLY ASP LYS SEQRES 17 D 265 THR GLY THR CYS GLY LYS TYR GLY THR ALA ASN ASP HIS SEQRES 18 D 265 ALA PHE ILE LEU GLN GLY ASN ASN ALA ALA PRO LEU ILE SEQRES 19 D 265 LEU SER ILE TYR THR THR ARG LYS GLY GLU HIS MET LYS SEQRES 20 D 265 HIS ASP ASP GLU VAL ILE ALA LYS ALA ALA ARG ILE ALA SEQRES 21 D 265 ILE GLU ASN VAL LYS FORMUL 5 HOH *1341(H2 O) HELIX 1 AA1 ASN A 4 GLU A 15 1 12 HELIX 2 AA2 SER A 44 SER A 60 1 17 HELIX 3 AA3 GLY A 62 LEU A 65 5 4 HELIX 4 AA4 SER A 79 PHE A 85 1 7 HELIX 5 AA5 VAL A 92 TYR A 102 1 11 HELIX 6 AA6 ASP A 104 TYR A 115 1 12 HELIX 7 AA7 LYS A 117 ILE A 129 1 13 HELIX 8 AA8 LEU A 141 SER A 145 5 5 HELIX 9 AA9 THR A 156 SER A 169 1 14 HELIX 10 AB1 ASP A 174 GLY A 187 1 14 HELIX 11 AB2 ARG A 194 VAL A 199 5 6 HELIX 12 AB3 ASP A 249 LYS A 265 1 17 HELIX 13 AB4 MET B 7 GLU B 15 1 9 HELIX 14 AB5 SER B 44 SER B 60 1 17 HELIX 15 AB6 GLY B 62 LEU B 65 5 4 HELIX 16 AB7 SER B 79 PHE B 85 1 7 HELIX 17 AB8 VAL B 92 TYR B 102 1 11 HELIX 18 AB9 ASP B 104 TYR B 115 1 12 HELIX 19 AC1 LYS B 117 ILE B 129 1 13 HELIX 20 AC2 LEU B 141 SER B 145 5 5 HELIX 21 AC3 THR B 156 SER B 169 1 14 HELIX 22 AC4 ASP B 174 GLY B 187 1 14 HELIX 23 AC5 ARG B 194 VAL B 199 5 6 HELIX 24 AC6 ASP B 249 LYS B 265 1 17 HELIX 25 AC7 MET C 7 GLU C 15 1 9 HELIX 26 AC8 SER C 44 SER C 60 1 17 HELIX 27 AC9 GLY C 62 LEU C 65 5 4 HELIX 28 AD1 SER C 79 GLN C 86 1 8 HELIX 29 AD2 VAL C 92 SER C 103 1 12 HELIX 30 AD3 ASP C 104 TYR C 115 1 12 HELIX 31 AD4 LYS C 117 ILE C 129 1 13 HELIX 32 AD5 LEU C 141 SER C 145 5 5 HELIX 33 AD6 THR C 156 SER C 169 1 14 HELIX 34 AD7 ASP C 174 GLY C 187 1 14 HELIX 35 AD8 ARG C 194 VAL C 199 5 6 HELIX 36 AD9 ASP C 249 LYS C 265 1 17 HELIX 37 AE1 MET D 7 GLU D 15 1 9 HELIX 38 AE2 SER D 44 SER D 60 1 17 HELIX 39 AE3 GLY D 62 LEU D 65 5 4 HELIX 40 AE4 SER D 79 PHE D 85 1 7 HELIX 41 AE5 VAL D 92 TYR D 102 1 11 HELIX 42 AE6 ASP D 104 TYR D 115 1 12 HELIX 43 AE7 LYS D 117 ILE D 129 1 13 HELIX 44 AE8 LEU D 141 SER D 145 5 5 HELIX 45 AE9 THR D 156 SER D 169 1 14 HELIX 46 AF1 ASP D 174 GLY D 187 1 14 HELIX 47 AF2 ARG D 194 VAL D 199 5 6 HELIX 48 AF3 ASP D 249 LYS D 265 1 17 SHEET 1 AA1 5 ALA A 30 TYR A 33 0 SHEET 2 AA1 5 GLY A 16 ASN A 24 -1 N VAL A 20 O TYR A 33 SHEET 3 AA1 5 LEU A 233 ARG A 241 -1 O THR A 240 N ARG A 17 SHEET 4 AA1 5 ALA A 218 LEU A 225 -1 N ASP A 220 O ILE A 237 SHEET 5 AA1 5 VAL A 204 THR A 211 -1 N VAL A 204 O LEU A 225 SHEET 1 AA2 2 PHE A 39 PRO A 40 0 SHEET 2 AA2 2 THR A 154 SER A 155 -1 O SER A 155 N PHE A 39 SHEET 1 AA3 2 LYS A 67 VAL A 68 0 SHEET 2 AA3 2 MET A 90 ALA A 91 -1 O MET A 90 N VAL A 68 SHEET 1 AA4 5 ALA B 30 TYR B 33 0 SHEET 2 AA4 5 ARG B 17 ASN B 24 -1 N VAL B 20 O TYR B 33 SHEET 3 AA4 5 LEU B 233 THR B 240 -1 O THR B 240 N ARG B 17 SHEET 4 AA4 5 ALA B 218 LEU B 225 -1 N ASP B 220 O ILE B 237 SHEET 5 AA4 5 VAL B 204 THR B 211 -1 N VAL B 204 O LEU B 225 SHEET 1 AA5 2 PHE B 39 PRO B 40 0 SHEET 2 AA5 2 THR B 154 SER B 155 -1 O SER B 155 N PHE B 39 SHEET 1 AA6 2 LYS B 67 VAL B 68 0 SHEET 2 AA6 2 MET B 90 ALA B 91 -1 O MET B 90 N VAL B 68 SHEET 1 AA7 5 ALA C 30 TYR C 33 0 SHEET 2 AA7 5 ARG C 17 ASN C 24 -1 N VAL C 20 O TYR C 33 SHEET 3 AA7 5 LEU C 233 THR C 240 -1 O TYR C 238 N GLY C 19 SHEET 4 AA7 5 ALA C 218 LEU C 225 -1 N ASP C 220 O ILE C 237 SHEET 5 AA7 5 VAL C 204 THR C 211 -1 N VAL C 204 O LEU C 225 SHEET 1 AA8 2 PHE C 39 PRO C 40 0 SHEET 2 AA8 2 THR C 154 SER C 155 -1 O SER C 155 N PHE C 39 SHEET 1 AA9 2 LYS C 67 VAL C 68 0 SHEET 2 AA9 2 MET C 90 ALA C 91 -1 O MET C 90 N VAL C 68 SHEET 1 AB1 5 ALA D 30 TYR D 33 0 SHEET 2 AB1 5 GLY D 16 ASN D 24 -1 N VAL D 20 O TYR D 33 SHEET 3 AB1 5 LEU D 233 ARG D 241 -1 O TYR D 238 N GLY D 19 SHEET 4 AB1 5 ALA D 218 LEU D 225 -1 N ASP D 220 O ILE D 237 SHEET 5 AB1 5 VAL D 204 THR D 211 -1 N VAL D 204 O LEU D 225 SHEET 1 AB2 2 PHE D 39 PRO D 40 0 SHEET 2 AB2 2 THR D 154 SER D 155 -1 O SER D 155 N PHE D 39 SHEET 1 AB3 2 LYS D 67 VAL D 68 0 SHEET 2 AB3 2 MET D 90 ALA D 91 -1 O MET D 90 N VAL D 68 SSBOND 1 CYS A 42 CYS A 212 1555 1555 2.08 SSBOND 2 CYS B 42 CYS B 212 1555 1555 2.09 SSBOND 3 CYS C 42 CYS C 212 1555 1555 2.08 SSBOND 4 CYS D 42 CYS D 212 1555 1555 2.06 CISPEP 1 GLU A 140 LEU A 141 0 0.65 CISPEP 2 GLU B 140 LEU B 141 0 3.05 CISPEP 3 GLU C 140 LEU C 141 0 3.28 CISPEP 4 GLU D 140 LEU D 141 0 4.22 CRYST1 209.930 46.650 113.610 90.00 99.28 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004763 0.000000 0.000778 0.00000 SCALE2 0.000000 0.021436 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008919 0.00000