HEADER MEMBRANE PROTEIN 25-SEP-18 6MK7 TITLE SOLUTION STRUCTURE OF THE LARGE EXTRACELLULAR LOOP OF FTSX IN TITLE 2 STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION PROTEIN FTSX; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 2 (STRAIN D39 SOURCE 3 / NCTC 7466); SOURCE 4 ORGANISM_TAXID: 373153; SOURCE 5 STRAIN: D39 / NCTC 7466; SOURCE 6 GENE: FTSX, SPD_0660; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL WALL, PEPTIDOGLYCAN, CELL DIVISION, MEMBRANE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR K.A.EDMONDS,Y.FU,H.WU,B.E.RUED,K.E.BRUCE,M.E.WINKLER,D.P.GIEDROC REVDAT 3 14-JUN-23 6MK7 1 REMARK REVDAT 2 01-JAN-20 6MK7 1 REMARK REVDAT 1 13-FEB-19 6MK7 0 JRNL AUTH B.E.RUED,M.ALCORLO,K.A.EDMONDS,S.MARTINEZ-CABALLERO, JRNL AUTH 2 D.STRAUME,Y.FU,K.E.BRUCE,H.WU,L.S.HAVARSTEIN,J.A.HERMOSO, JRNL AUTH 3 M.E.WINKLER,D.P.GIEDROC JRNL TITL STRUCTURE OF THE LARGE EXTRACELLULAR LOOP OF FTSX AND ITS JRNL TITL 2 INTERACTION WITH THE ESSENTIAL PEPTIDOGLYCAN HYDROLASE PCSB JRNL TITL 3 IN STREPTOCOCCUS PNEUMONIAE. JRNL REF MBIO V. 10 2019 JRNL REFN ESSN 2150-7511 JRNL PMID 30696736 JRNL DOI 10.1128/MBIO.02622-18 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MK7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237085. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-99% 13C; U-99% 15N] REMARK 210 FTSX EXTRACELLULAR LOOP 1, 90 % REMARK 210 H2O, 10 % [U-99% 2H] D2O, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 0.2 MM DSS, 90% REMARK 210 H2O/10% D2O; 0.4 MM [U-99% 13C; REMARK 210 U-99% 15N] FTSX EXTRACELLULAR REMARK 210 LOOP 1, 90 % H2O, 10 % [U-99% 2H] REMARK 210 D2O, 50 MM POTASSIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 0.2 MM REMARK 210 DSS, 20 MG/ML PF1 PHAGE, 90% H2O/ REMARK 210 10% D2O; 0.7 MM [U-99% 13C; U-99% REMARK 210 15N] FTSX EXTRACELLULAR LOOP 1, REMARK 210 100 % [U-99% 2H] D2O, 50 MM REMARK 210 POTASSIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCA; 3D HNCACB; 3D HN(CO) REMARK 210 CA; 3D HNCO; 3D H(CCO)NH; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC; 2D IPAP 1H-15N HSQC; REMARK 210 2D HBCBCGCDHE; 2D HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, ANALYSIS, NMRPIPE, VNMRJ, REMARK 210 TALOS, SPARKY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 ALA A 44 REMARK 465 MET A 45 REMARK 465 ALA A 46 REMARK 465 THR A 47 REMARK 465 ALA A 48 REMARK 465 LYS A 49 REMARK 465 LEU A 50 REMARK 465 ALA A 51 REMARK 465 THR A 52 REMARK 465 ASP A 53 REMARK 465 ILE A 54 REMARK 465 GLU A 55 REMARK 465 ASN A 56 REMARK 465 GLY A 167 REMARK 465 ALA A 168 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 65 154.66 -40.87 REMARK 500 1 LYS A 66 -88.91 -30.94 REMARK 500 1 ASP A 67 53.24 -109.91 REMARK 500 1 ASN A 71 41.35 -101.72 REMARK 500 1 SER A 72 -126.16 -126.86 REMARK 500 1 GLN A 73 139.70 179.62 REMARK 500 1 THR A 74 109.30 57.89 REMARK 500 1 GLU A 78 -76.46 67.48 REMARK 500 1 GLN A 80 -158.57 60.73 REMARK 500 1 HIS A 88 16.86 58.72 REMARK 500 1 SER A 98 -53.63 77.95 REMARK 500 1 ILE A 125 39.91 -168.55 REMARK 500 1 GLU A 127 179.15 174.48 REMARK 500 1 TYR A 134 -163.33 -123.57 REMARK 500 1 GLU A 158 -129.12 36.01 REMARK 500 2 ARG A 59 141.44 71.28 REMARK 500 2 ARG A 65 161.04 -42.49 REMARK 500 2 ASP A 67 91.46 -168.04 REMARK 500 2 GLU A 69 146.32 62.83 REMARK 500 2 ASP A 70 -74.16 -157.92 REMARK 500 2 SER A 72 -120.70 -63.66 REMARK 500 2 GLN A 73 -29.97 176.82 REMARK 500 2 HIS A 88 18.05 57.11 REMARK 500 2 SER A 98 160.71 72.47 REMARK 500 2 MET A 119 -72.76 -93.26 REMARK 500 2 PHE A 126 48.26 -81.52 REMARK 500 2 LEU A 133 174.16 63.90 REMARK 500 2 TYR A 134 -161.95 -125.96 REMARK 500 2 ILE A 157 -86.39 -65.02 REMARK 500 2 GLU A 158 -79.03 -165.37 REMARK 500 3 VAL A 58 -3.89 73.44 REMARK 500 3 GLU A 69 178.08 -56.14 REMARK 500 3 ASP A 70 85.62 -168.13 REMARK 500 3 HIS A 88 83.83 64.70 REMARK 500 3 LYS A 89 -66.70 -123.38 REMARK 500 3 SER A 98 -61.35 84.79 REMARK 500 3 ASN A 122 58.69 -174.25 REMARK 500 3 TRP A 123 -18.09 -174.16 REMARK 500 3 ASP A 129 -64.95 -109.39 REMARK 500 3 ALA A 130 -179.36 -170.70 REMARK 500 3 ASN A 142 83.57 -69.32 REMARK 500 3 ALA A 143 157.43 90.52 REMARK 500 3 GLU A 158 -121.03 44.05 REMARK 500 4 VAL A 58 103.87 -53.63 REMARK 500 4 ARG A 59 111.04 155.86 REMARK 500 4 ASP A 70 -78.23 61.43 REMARK 500 4 SER A 72 -141.18 -140.33 REMARK 500 4 GLN A 73 -31.28 -174.81 REMARK 500 4 GLU A 78 28.49 47.15 REMARK 500 4 SER A 98 -68.35 77.12 REMARK 500 REMARK 500 THIS ENTRY HAS 280 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6HE6 RELATED DB: PDB REMARK 900 CRYSTAL, COMPLEX WITH DODECYLTRIMETHYLAMMONIUM CHLORIDE REMARK 900 RELATED ID: 6HEE RELATED DB: PDB REMARK 900 CRYSTAL COMPLEX WITH N-UNDECYL-BETA-D-MALTOSIDE REMARK 900 RELATED ID: 6HFX RELATED DB: PDB REMARK 900 CRYSTAL, COMPLEX WITH N-DECYL-BETA-D-MALTOSIDE REMARK 900 RELATED ID: 26534 RELATED DB: BMRB REMARK 900 INITIAL NMR ASSIGNMENT REMARK 900 RELATED ID: 30523 RELATED DB: BMRB REMARK 900 SOLUTION STRUCTURE OF THE LARGE EXTRACELLULAR LOOP OF FTSX IN REMARK 900 STREPTOCOCCUS PNEUMONIAE DBREF 6MK7 A 47 168 UNP Q04LE4 FTSX_STRP2 47 168 SEQADV 6MK7 GLY A 43 UNP Q04LE4 EXPRESSION TAG SEQADV 6MK7 ALA A 44 UNP Q04LE4 EXPRESSION TAG SEQADV 6MK7 MET A 45 UNP Q04LE4 EXPRESSION TAG SEQADV 6MK7 ALA A 46 UNP Q04LE4 EXPRESSION TAG SEQRES 1 A 126 GLY ALA MET ALA THR ALA LYS LEU ALA THR ASP ILE GLU SEQRES 2 A 126 ASN ASN VAL ARG VAL VAL VAL TYR ILE ARG LYS ASP VAL SEQRES 3 A 126 GLU ASP ASN SER GLN THR ILE GLU LYS GLU GLY GLN THR SEQRES 4 A 126 VAL THR ASN ASN ASP TYR HIS LYS VAL TYR ASP SER LEU SEQRES 5 A 126 LYS ASN MET SER THR VAL LYS SER VAL THR PHE SER SER SEQRES 6 A 126 LYS GLU GLU GLN TYR GLU LYS LEU THR GLU ILE MET GLY SEQRES 7 A 126 ASP ASN TRP LYS ILE PHE GLU GLY ASP ALA ASN PRO LEU SEQRES 8 A 126 TYR ASP ALA TYR ILE VAL GLU ALA ASN ALA PRO ASN ASP SEQRES 9 A 126 VAL LYS THR ILE ALA GLU ASP ALA LYS LYS ILE GLU GLY SEQRES 10 A 126 VAL SER GLU VAL GLN ASP GLY GLY ALA HELIX 1 AA1 HIS A 88 ASN A 96 1 9 HELIX 2 AA2 SER A 107 MET A 119 1 13 HELIX 3 AA3 ASP A 146 LYS A 155 1 10 SHEET 1 AA1 4 VAL A 100 SER A 106 0 SHEET 2 AA1 4 ALA A 136 ALA A 141 -1 O ALA A 136 N SER A 106 SHEET 3 AA1 4 ARG A 59 ILE A 64 -1 N VAL A 60 O VAL A 139 SHEET 4 AA1 4 VAL A 160 ASP A 165 -1 O GLU A 162 N TYR A 63 SHEET 1 AA2 2 ILE A 75 GLU A 76 0 SHEET 2 AA2 2 THR A 81 VAL A 82 -1 O VAL A 82 N ILE A 75 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1