HEADER TRANSCRIPTION/DNA 26-SEP-18 6ML6 TITLE ZBTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 4 TITLE 2 WITH A CPA 5MC MODIFICATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGERS 4-8 (UNP RESIDUES 375-519); COMPND 5 SYNONYM: BONE MORPHOGENETIC PROTEIN-INDUCED FACTOR 1, BRAIN-SPECIFIC COMPND 6 PROTEIN 1, ZINC FINGER PROTEIN 450; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*CP*GP*(5CM) COMPND 10 P*AP*GP*GP*TP*CP*CP*TP*GP*GP*AP*CP*GP*AP*AP*TP*T)-3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*AP*AP*TP*TP*CP*GP*TP*CP*CP*AP*GP*GP*AP*CP*CP*TP*GP*CP*G)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZBTB24, BIF1, BSG1, ZNF450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,R.REN REVDAT 4 11-OCT-23 6ML6 1 REMARK REVDAT 3 01-JAN-20 6ML6 1 REMARK REVDAT 2 30-OCT-19 6ML6 1 JRNL REVDAT 1 03-JUL-19 6ML6 0 JRNL AUTH R.REN,S.HARDIKAR,J.R.HORTON,Y.LU,Y.ZENG,A.K.SINGH,K.LIN, JRNL AUTH 2 L.D.COLETTA,J.SHEN,C.S.LIN KONG,H.HASHIMOTO,X.ZHANG,T.CHEN, JRNL AUTH 3 X.CHENG JRNL TITL STRUCTURAL BASIS OF SPECIFIC DNA BINDING BY THE JRNL TITL 2 TRANSCRIPTION FACTOR ZBTB24. JRNL REF NUCLEIC ACIDS RES. V. 47 8388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31226215 JRNL DOI 10.1093/NAR/GKZ557 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.04 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45091 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1814 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0425 - 3.6187 1.00 3406 139 0.1452 0.1364 REMARK 3 2 3.6187 - 2.8732 0.99 3326 140 0.1822 0.2184 REMARK 3 3 2.8732 - 2.5103 1.00 3371 137 0.2013 0.2432 REMARK 3 4 2.5103 - 2.2809 1.00 3327 142 0.2005 0.2256 REMARK 3 5 2.2809 - 2.1174 1.00 3332 133 0.2085 0.2419 REMARK 3 6 2.1174 - 1.9926 1.00 3347 146 0.2224 0.2510 REMARK 3 7 1.9926 - 1.8929 1.00 3294 146 0.2236 0.2442 REMARK 3 8 1.8929 - 1.8105 1.00 3336 150 0.2295 0.2515 REMARK 3 9 1.8105 - 1.7408 1.00 3330 123 0.2415 0.2601 REMARK 3 10 1.7408 - 1.6807 1.00 3307 138 0.2455 0.2189 REMARK 3 11 1.6807 - 1.6282 0.99 3294 142 0.2700 0.2952 REMARK 3 12 1.6282 - 1.5816 1.00 3298 137 0.3039 0.3510 REMARK 3 13 1.5816 - 1.5400 1.00 3309 141 0.3149 0.3518 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2143 REMARK 3 ANGLE : 0.538 3054 REMARK 3 CHIRALITY : 0.032 327 REMARK 3 PLANARITY : 0.003 240 REMARK 3 DIHEDRAL : 17.261 1399 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2956 34.6457 26.0255 REMARK 3 T TENSOR REMARK 3 T11: 0.2223 T22: 0.1920 REMARK 3 T33: 0.1930 T12: 0.0876 REMARK 3 T13: 0.0290 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 8.7306 L22: 7.5854 REMARK 3 L33: 8.5124 L12: 0.2821 REMARK 3 L13: -1.9018 L23: 4.6986 REMARK 3 S TENSOR REMARK 3 S11: -0.0716 S12: -0.0448 S13: 0.2468 REMARK 3 S21: -0.2606 S22: -0.2137 S23: -0.1739 REMARK 3 S31: 0.3061 S32: 0.0596 S33: 0.2785 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9714 20.5259 8.2468 REMARK 3 T TENSOR REMARK 3 T11: 0.0902 T22: 0.1631 REMARK 3 T33: 0.1584 T12: 0.0268 REMARK 3 T13: 0.0335 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 5.5216 L22: 6.1368 REMARK 3 L33: 7.7172 L12: 2.5856 REMARK 3 L13: 0.2817 L23: 1.3952 REMARK 3 S TENSOR REMARK 3 S11: -0.1303 S12: 0.2056 S13: 0.2306 REMARK 3 S21: -0.3157 S22: 0.1165 S23: -0.3277 REMARK 3 S31: -0.3214 S32: -0.0552 S33: -0.0192 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 484 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8822 8.5007 8.4340 REMARK 3 T TENSOR REMARK 3 T11: 0.1041 T22: 0.0913 REMARK 3 T33: 0.0594 T12: -0.0077 REMARK 3 T13: 0.0092 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 6.6899 L22: 2.9665 REMARK 3 L33: 0.7032 L12: -3.4747 REMARK 3 L13: -0.3201 L23: 0.2642 REMARK 3 S TENSOR REMARK 3 S11: -0.0396 S12: -0.2392 S13: -0.0803 REMARK 3 S21: 0.0790 S22: 0.0786 S23: 0.1280 REMARK 3 S31: 0.0513 S32: -0.0276 S33: -0.0392 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 485 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3752 27.4749 -9.3335 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.0895 REMARK 3 T33: 0.1614 T12: -0.0597 REMARK 3 T13: -0.0267 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 6.4182 L22: 6.1326 REMARK 3 L33: 9.1814 L12: -1.2042 REMARK 3 L13: -0.2376 L23: -0.3374 REMARK 3 S TENSOR REMARK 3 S11: -0.1932 S12: 0.3206 S13: -0.0953 REMARK 3 S21: -0.4748 S22: 0.1435 S23: 0.1647 REMARK 3 S31: 0.1390 S32: -0.0342 S33: 0.0596 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9922 18.6258 -10.3125 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.1907 REMARK 3 T33: 0.2639 T12: -0.0535 REMARK 3 T13: -0.1361 T23: 0.0462 REMARK 3 L TENSOR REMARK 3 L11: 2.1021 L22: 0.5580 REMARK 3 L33: 6.5613 L12: -0.7180 REMARK 3 L13: 3.3914 L23: -0.5703 REMARK 3 S TENSOR REMARK 3 S11: -0.1524 S12: 0.2183 S13: 0.3740 REMARK 3 S21: -0.3177 S22: 0.1418 S23: 0.3119 REMARK 3 S31: -0.1717 S32: -0.1209 S33: 0.1190 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4239 10.6381 1.3893 REMARK 3 T TENSOR REMARK 3 T11: 0.1413 T22: 0.0884 REMARK 3 T33: 0.0671 T12: 0.0183 REMARK 3 T13: 0.0128 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 8.1250 L22: 6.6355 REMARK 3 L33: 5.3168 L12: -4.9519 REMARK 3 L13: 6.3171 L23: -2.6533 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: -0.0490 S13: -0.4042 REMARK 3 S21: -0.0964 S22: 0.1707 S23: 0.3718 REMARK 3 S31: -0.1643 S32: -0.1062 S33: -0.1666 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2486 20.3970 12.9266 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1907 REMARK 3 T33: 0.1160 T12: 0.0267 REMARK 3 T13: -0.0016 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 4.3268 L22: 4.2939 REMARK 3 L33: 7.4596 L12: 2.4656 REMARK 3 L13: -1.6630 L23: -4.1354 REMARK 3 S TENSOR REMARK 3 S11: 0.1144 S12: -0.4204 S13: 0.3480 REMARK 3 S21: 0.1570 S22: 0.1749 S23: 0.1163 REMARK 3 S31: -0.4261 S32: -0.1494 S33: -0.2344 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6892 13.4776 26.9989 REMARK 3 T TENSOR REMARK 3 T11: 0.2290 T22: 0.3055 REMARK 3 T33: 0.1429 T12: -0.0276 REMARK 3 T13: -0.0629 T23: -0.0000 REMARK 3 L TENSOR REMARK 3 L11: 7.3348 L22: 9.2075 REMARK 3 L33: 7.6540 L12: -3.0529 REMARK 3 L13: 3.8750 L23: -1.0950 REMARK 3 S TENSOR REMARK 3 S11: -0.0733 S12: -0.6590 S13: -0.4984 REMARK 3 S21: 0.5786 S22: 0.2524 S23: -0.1410 REMARK 3 S31: 0.1537 S32: -0.5117 S33: -0.1604 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.8718 16.4851 23.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.1732 T22: 0.2149 REMARK 3 T33: 0.1318 T12: 0.0293 REMARK 3 T13: -0.0479 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.7337 L22: 2.8723 REMARK 3 L33: 6.2872 L12: 1.6108 REMARK 3 L13: 2.4123 L23: 1.4486 REMARK 3 S TENSOR REMARK 3 S11: -0.0021 S12: -0.4152 S13: -0.1118 REMARK 3 S21: 0.3499 S22: 0.1409 S23: -0.3063 REMARK 3 S31: -0.0696 S32: -0.0201 S33: -0.1410 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.8826 19.6920 2.3865 REMARK 3 T TENSOR REMARK 3 T11: 0.1816 T22: 0.1429 REMARK 3 T33: 0.1176 T12: 0.0076 REMARK 3 T13: 0.0172 T23: 0.0221 REMARK 3 L TENSOR REMARK 3 L11: 5.3930 L22: 7.6661 REMARK 3 L33: 8.7483 L12: 1.9095 REMARK 3 L13: 5.5893 L23: 1.3726 REMARK 3 S TENSOR REMARK 3 S11: -0.1708 S12: 0.1998 S13: 0.0810 REMARK 3 S21: -0.5975 S22: 0.2814 S23: -0.1486 REMARK 3 S31: -1.1320 S32: -0.3151 S33: -0.0734 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0159 10.4010 -8.8731 REMARK 3 T TENSOR REMARK 3 T11: 0.3302 T22: 0.2219 REMARK 3 T33: 0.2613 T12: -0.0650 REMARK 3 T13: -0.0603 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 4.1059 L22: 6.7561 REMARK 3 L33: 6.7562 L12: 0.0288 REMARK 3 L13: 4.9099 L23: 0.4261 REMARK 3 S TENSOR REMARK 3 S11: -0.2447 S12: 0.9771 S13: -1.6252 REMARK 3 S21: -0.4577 S22: 0.5963 S23: 0.2770 REMARK 3 S31: 0.3690 S32: 0.0205 S33: -0.3545 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ML6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45159 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 28.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6ML5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.62 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1 M BIS-TRIS, PH 5.5, REMARK 280 0.2 M AMMONIUM ACETATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.12200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 HIS A 516 REMARK 465 THR A 517 REMARK 465 ALA A 518 REMARK 465 ASP A 519 REMARK 465 TYR A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 509 CE NZ REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 515 CG CD CE NZ REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 882 DISTANCE = 6.29 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 CYS A 382 SG 117.3 REMARK 620 3 HIS A 395 NE2 111.8 96.8 REMARK 620 4 HIS A 399 NE2 105.1 118.1 107.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 117.8 REMARK 620 3 HIS A 423 NE2 112.4 100.5 REMARK 620 4 HIS A 427 NE2 111.2 116.1 96.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 117.0 REMARK 620 3 HIS A 451 NE2 109.0 108.6 REMARK 620 4 HIS A 455 NE2 108.2 116.2 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 463 SG REMARK 620 2 CYS A 466 SG 118.0 REMARK 620 3 HIS A 479 NE2 111.8 95.5 REMARK 620 4 HIS A 483 NE2 102.3 117.9 111.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 491 SG REMARK 620 2 CYS A 494 SG 115.2 REMARK 620 3 HIS A 507 NE2 109.0 104.8 REMARK 620 4 HIS A 511 NE2 106.3 119.7 100.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 608 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO F 101 DBREF 6ML6 A 375 519 UNP Q80X44 ZBT24_MOUSE 375 519 DBREF 6ML6 E 1 20 PDB 6ML6 6ML6 1 20 DBREF 6ML6 F 1 20 PDB 6ML6 6ML6 1 20 SEQADV 6ML6 GLY A 370 UNP Q80X44 EXPRESSION TAG SEQADV 6ML6 PRO A 371 UNP Q80X44 EXPRESSION TAG SEQADV 6ML6 LEU A 372 UNP Q80X44 EXPRESSION TAG SEQADV 6ML6 GLY A 373 UNP Q80X44 EXPRESSION TAG SEQADV 6ML6 SER A 374 UNP Q80X44 EXPRESSION TAG SEQADV 6ML6 TYR A 520 UNP Q80X44 EXPRESSION TAG SEQRES 1 A 151 GLY PRO LEU GLY SER LYS SER PHE THR CYS ASP GLN CYS SEQRES 2 A 151 GLY LYS TYR PHE SER GLN LYS ARG GLN LEU LYS SER HIS SEQRES 3 A 151 TYR ARG VAL HIS THR GLY HIS SER LEU PRO GLU CYS SER SEQRES 4 A 151 HIS CYS HIS ARG LYS PHE MET ASP VAL SER GLN LEU LYS SEQRES 5 A 151 LYS HIS LEU ARG THR HIS THR GLY GLU LYS PRO PHE THR SEQRES 6 A 151 CYS GLU ILE CYS GLY LYS SER PHE THR ALA LYS SER SER SEQRES 7 A 151 LEU GLN THR HIS ILE ARG ILE HIS ARG GLY GLU LYS PRO SEQRES 8 A 151 TYR SER CYS SER ILE CYS GLY LYS CYS PHE SER ASP SER SEQRES 9 A 151 SER ALA LYS ARG ARG HIS CYS ILE LEU HIS THR GLY LYS SEQRES 10 A 151 LYS PRO PHE SER CYS PRO GLU CYS GLY LEU GLN PHE ALA SEQRES 11 A 151 ARG LEU ASP ASN LEU LYS ALA HIS LEU LYS ILE HIS SER SEQRES 12 A 151 LYS GLU LYS HIS THR ALA ASP TYR SEQRES 1 E 20 DA DC DG 5CM DA DG DG DT DC DC DT DG DG SEQRES 2 E 20 DA DC DG DA DA DT DT SEQRES 1 F 20 DT DA DA DT DT DC DG DT DC DC DA DG DG SEQRES 2 F 20 DA DC DC DT DG DC DG HET 5CM E 4 20 HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET EDO A 606 4 HET EDO A 607 4 HET EDO A 608 4 HET EDO E 101 4 HET EDO F 101 4 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5CM C10 H16 N3 O7 P FORMUL 4 ZN 5(ZN 2+) FORMUL 9 EDO 5(C2 H6 O2) FORMUL 14 HOH *356(H2 O) HELIX 1 AA1 GLN A 388 TYR A 396 1 9 HELIX 2 AA2 TYR A 396 GLY A 401 1 6 HELIX 3 AA3 ASP A 416 GLY A 429 1 14 HELIX 4 AA4 ALA A 444 ARG A 456 1 13 HELIX 5 AA5 ASP A 472 ILE A 481 1 10 HELIX 6 AA6 LEU A 482 THR A 484 5 3 HELIX 7 AA7 ARG A 500 LYS A 515 1 16 SHEET 1 AA1 2 PHE A 377 THR A 378 0 SHEET 2 AA1 2 TYR A 385 PHE A 386 -1 O PHE A 386 N PHE A 377 SHEET 1 AA2 2 PHE A 433 THR A 434 0 SHEET 2 AA2 2 SER A 441 PHE A 442 -1 O PHE A 442 N PHE A 433 SHEET 1 AA3 2 TYR A 461 SER A 462 0 SHEET 2 AA3 2 CYS A 469 PHE A 470 -1 O PHE A 470 N TYR A 461 SHEET 1 AA4 2 PHE A 489 SER A 490 0 SHEET 2 AA4 2 GLN A 497 PHE A 498 -1 O PHE A 498 N PHE A 489 LINK O3' DG E 3 P 5CM E 4 1555 1555 1.61 LINK O3' 5CM E 4 P DA E 5 1555 1555 1.61 LINK SG CYS A 379 ZN ZN A 601 1555 1555 2.31 LINK SG CYS A 382 ZN ZN A 601 1555 1555 2.29 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.04 LINK NE2 HIS A 399 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 407 ZN ZN A 602 1555 1555 2.34 LINK SG CYS A 410 ZN ZN A 602 1555 1555 2.29 LINK NE2 HIS A 423 ZN ZN A 602 1555 1555 2.01 LINK NE2 HIS A 427 ZN ZN A 602 1555 1555 2.03 LINK SG CYS A 435 ZN ZN A 603 1555 1555 2.30 LINK SG CYS A 438 ZN ZN A 603 1555 1555 2.30 LINK NE2 HIS A 451 ZN ZN A 603 1555 1555 2.03 LINK NE2 HIS A 455 ZN ZN A 603 1555 1555 2.04 LINK SG CYS A 463 ZN ZN A 604 1555 1555 2.31 LINK SG CYS A 466 ZN ZN A 604 1555 1555 2.30 LINK NE2 HIS A 479 ZN ZN A 604 1555 1555 2.05 LINK NE2 HIS A 483 ZN ZN A 604 1555 1555 2.03 LINK SG CYS A 491 ZN ZN A 605 1555 1555 2.30 LINK SG CYS A 494 ZN ZN A 605 1555 1555 2.30 LINK NE2 HIS A 507 ZN ZN A 605 1555 1555 2.03 LINK NE2 HIS A 511 ZN ZN A 605 1555 1555 2.03 SITE 1 AC1 4 CYS A 379 CYS A 382 HIS A 395 HIS A 399 SITE 1 AC2 4 CYS A 407 CYS A 410 HIS A 423 HIS A 427 SITE 1 AC3 4 CYS A 435 CYS A 438 HIS A 451 HIS A 455 SITE 1 AC4 4 CYS A 463 CYS A 466 HIS A 479 HIS A 483 SITE 1 AC5 4 CYS A 491 CYS A 494 HIS A 507 HIS A 511 SITE 1 AC6 5 LYS A 440 HIS A 451 HOH A 808 DT E 8 SITE 2 AC6 5 DC E 9 SITE 1 AC7 3 GLU A 493 HOH A 701 HOH A 727 SITE 1 AC8 6 TYR A 461 SER A 473 HOH A 708 HOH A 722 SITE 2 AC8 6 HOH A 774 DC F 10 SITE 1 AC9 6 DG E 7 DT E 8 HOH E 201 HOH E 213 SITE 2 AC9 6 HOH E 273 HOH F 228 SITE 1 AD1 3 DG F 18 DC F 19 HOH F 247 CRYST1 46.163 68.244 49.259 90.00 92.90 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021662 0.000000 0.001097 0.00000 SCALE2 0.000000 0.014653 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020327 0.00000