HEADER TRANSCRIPTION/DNA 26-SEP-18 6ML7 TITLE ZBTB24 ZINC FINGERS 4-8 WITH 19+1MER DNA OLIGONUCLEOTIDE (SEQUENCE 4 TITLE 2 WITH A CPG 5MC MODIFICATION) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ZINC FINGERS 4-8 (UNP RESIDUES 375-519); COMPND 5 SYNONYM: BONE MORPHOGENETIC PROTEIN-INDUCED FACTOR 1, BRAIN-SPECIFIC COMPND 6 PROTEIN 1, ZINC FINGER PROTEIN 450; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*CP*GP*CP*AP*GP*GP*TP*CP*CP*TP*GP*GP*AP*(5CM) COMPND 10 P*GP*AP*AP*TP*T)-3'); COMPND 11 CHAIN: E; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'- COMPND 15 D(*TP*AP*AP*TP*TP*CP*GP*TP*CP*CP*AP*GP*GP*AP*CP*CP*TP*GP*CP*G)-3'); COMPND 16 CHAIN: F; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: ZBTB24, BIF1, BSG1, ZNF450; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_COMMON: MOUSE; SOURCE 12 ORGANISM_TAXID: 10090; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 16 ORGANISM_COMMON: MOUSE; SOURCE 17 ORGANISM_TAXID: 10090 KEYWDS PROTEIN-DNA COMPLEX, TRANSCRIPTION, TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.R.HORTON,X.CHENG,R.REN REVDAT 4 11-OCT-23 6ML7 1 REMARK REVDAT 3 01-JAN-20 6ML7 1 REMARK REVDAT 2 30-OCT-19 6ML7 1 JRNL REVDAT 1 03-JUL-19 6ML7 0 JRNL AUTH R.REN,S.HARDIKAR,J.R.HORTON,Y.LU,Y.ZENG,A.K.SINGH,K.LIN, JRNL AUTH 2 L.D.COLETTA,J.SHEN,C.S.LIN KONG,H.HASHIMOTO,X.ZHANG,T.CHEN, JRNL AUTH 3 X.CHENG JRNL TITL STRUCTURAL BASIS OF SPECIFIC DNA BINDING BY THE JRNL TITL 2 TRANSCRIPTION FACTOR ZBTB24. JRNL REF NUCLEIC ACIDS RES. V. 47 8388 2019 JRNL REFN ESSN 1362-4962 JRNL PMID 31226215 JRNL DOI 10.1093/NAR/GKZ557 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 30506 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0176 - 3.8890 1.00 2704 138 0.1426 0.1922 REMARK 3 2 3.8890 - 3.0880 0.99 2629 131 0.1585 0.2079 REMARK 3 3 3.0880 - 2.6981 1.00 2646 136 0.1928 0.2572 REMARK 3 4 2.6981 - 2.4515 1.00 2635 135 0.1880 0.2251 REMARK 3 5 2.4515 - 2.2759 1.00 2627 145 0.1981 0.2571 REMARK 3 6 2.2759 - 2.1418 1.00 2634 137 0.2122 0.2475 REMARK 3 7 2.1418 - 2.0345 1.00 2634 136 0.2377 0.2915 REMARK 3 8 2.0345 - 1.9460 1.00 2613 141 0.2559 0.3074 REMARK 3 9 1.9460 - 1.8711 1.00 2634 141 0.2713 0.2871 REMARK 3 10 1.8711 - 1.8065 1.00 2605 144 0.3000 0.3038 REMARK 3 11 1.8065 - 1.7501 1.00 2625 136 0.3165 0.3439 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2085 REMARK 3 ANGLE : 0.777 2961 REMARK 3 CHIRALITY : 0.041 317 REMARK 3 PLANARITY : 0.004 236 REMARK 3 DIHEDRAL : 21.668 1094 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.5590 34.6232 25.4732 REMARK 3 T TENSOR REMARK 3 T11: 0.4212 T22: 0.3046 REMARK 3 T33: 0.3001 T12: 0.1789 REMARK 3 T13: 0.0213 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 4.3061 L22: 3.2503 REMARK 3 L33: 9.5750 L12: -0.0087 REMARK 3 L13: -2.9839 L23: 3.6821 REMARK 3 S TENSOR REMARK 3 S11: 0.1200 S12: 0.2061 S13: 0.0907 REMARK 3 S21: -0.6003 S22: -0.2737 S23: -0.0630 REMARK 3 S31: 0.2735 S32: 0.1947 S33: 0.2062 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 416 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.6296 24.7637 8.2921 REMARK 3 T TENSOR REMARK 3 T11: 0.4598 T22: 0.3103 REMARK 3 T33: 0.3569 T12: 0.0361 REMARK 3 T13: 0.0857 T23: -0.0111 REMARK 3 L TENSOR REMARK 3 L11: 7.4602 L22: 2.0186 REMARK 3 L33: 4.6793 L12: 4.1077 REMARK 3 L13: 0.8891 L23: -6.1620 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: 0.3057 S13: 0.3749 REMARK 3 S21: 0.3343 S22: 0.0941 S23: -0.6251 REMARK 3 S31: -0.9165 S32: -0.0903 S33: -0.1819 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 417 THROUGH 428 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4822 15.2762 7.2507 REMARK 3 T TENSOR REMARK 3 T11: 0.2064 T22: 0.3748 REMARK 3 T33: 0.2617 T12: -0.0602 REMARK 3 T13: 0.0904 T23: -0.0880 REMARK 3 L TENSOR REMARK 3 L11: 0.8224 L22: 3.9734 REMARK 3 L33: 2.0322 L12: 0.1339 REMARK 3 L13: 0.8728 L23: 3.9377 REMARK 3 S TENSOR REMARK 3 S11: -0.1272 S12: 0.1895 S13: 0.0600 REMARK 3 S21: -0.4635 S22: 0.4250 S23: -0.3953 REMARK 3 S31: 0.1532 S32: 0.3871 S33: -0.1961 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 429 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.4509 4.2477 8.3531 REMARK 3 T TENSOR REMARK 3 T11: 0.1448 T22: 0.1008 REMARK 3 T33: 0.1036 T12: 0.0032 REMARK 3 T13: -0.0188 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 6.7628 L22: 3.5014 REMARK 3 L33: 1.8090 L12: -3.4599 REMARK 3 L13: -1.0127 L23: 1.1424 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: -0.2297 S13: -0.3229 REMARK 3 S21: 0.1520 S22: 0.1553 S23: 0.0597 REMARK 3 S31: 0.1353 S32: 0.0738 S33: -0.0683 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 466 THROUGH 494 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2801 20.9206 3.5249 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.1616 REMARK 3 T33: 0.1506 T12: -0.0013 REMARK 3 T13: 0.0044 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.1687 L22: 7.0562 REMARK 3 L33: 2.8463 L12: 0.9884 REMARK 3 L13: -0.2207 L23: -4.1721 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: -0.0054 S13: 0.2113 REMARK 3 S21: 0.0896 S22: 0.1874 S23: 0.3402 REMARK 3 S31: -0.0804 S32: -0.1553 S33: -0.0725 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 495 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1443 25.7478 -10.9222 REMARK 3 T TENSOR REMARK 3 T11: 0.2808 T22: 0.1966 REMARK 3 T33: 0.2005 T12: -0.0902 REMARK 3 T13: -0.0145 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 6.5876 L22: 6.6327 REMARK 3 L33: 5.7255 L12: -1.0545 REMARK 3 L13: 0.0419 L23: -2.7000 REMARK 3 S TENSOR REMARK 3 S11: -0.2431 S12: 0.6944 S13: -0.0388 REMARK 3 S21: -0.8586 S22: 0.1651 S23: 0.1158 REMARK 3 S31: 0.6152 S32: -0.1511 S33: 0.0340 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0734 18.6703 -10.3616 REMARK 3 T TENSOR REMARK 3 T11: 0.2732 T22: 0.2447 REMARK 3 T33: 0.2512 T12: -0.0623 REMARK 3 T13: -0.0810 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 1.4106 L22: 1.8099 REMARK 3 L33: 2.0222 L12: -1.1551 REMARK 3 L13: 1.8950 L23: -1.4481 REMARK 3 S TENSOR REMARK 3 S11: -0.2448 S12: 0.1899 S13: 0.1541 REMARK 3 S21: -0.3491 S22: 0.2260 S23: 0.2141 REMARK 3 S31: -0.3772 S32: 0.1833 S33: -0.0344 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4931 10.5608 1.1139 REMARK 3 T TENSOR REMARK 3 T11: 0.2131 T22: 0.1554 REMARK 3 T33: 0.1389 T12: 0.0183 REMARK 3 T13: 0.0198 T23: 0.0161 REMARK 3 L TENSOR REMARK 3 L11: 3.5705 L22: 4.7557 REMARK 3 L33: 3.1590 L12: -3.2033 REMARK 3 L13: 2.7013 L23: -0.9323 REMARK 3 S TENSOR REMARK 3 S11: 0.0552 S12: 0.0267 S13: -0.2133 REMARK 3 S21: -0.0062 S22: 0.0877 S23: 0.3724 REMARK 3 S31: -0.2824 S32: -0.0986 S33: -0.1566 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.9348 16.8751 19.6355 REMARK 3 T TENSOR REMARK 3 T11: 0.1678 T22: 0.2130 REMARK 3 T33: 0.1633 T12: -0.0388 REMARK 3 T13: -0.0121 T23: -0.0485 REMARK 3 L TENSOR REMARK 3 L11: 5.3034 L22: 3.9375 REMARK 3 L33: 8.1073 L12: -0.4099 REMARK 3 L13: 3.7440 L23: -1.0707 REMARK 3 S TENSOR REMARK 3 S11: 0.0244 S12: -0.6924 S13: -0.0266 REMARK 3 S21: 0.3344 S22: 0.2625 S23: -0.2165 REMARK 3 S31: 0.0225 S32: -0.5416 S33: -0.2815 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.9432 16.4838 22.7996 REMARK 3 T TENSOR REMARK 3 T11: 0.2255 T22: 0.2449 REMARK 3 T33: 0.1691 T12: 0.0303 REMARK 3 T13: -0.0389 T23: -0.0481 REMARK 3 L TENSOR REMARK 3 L11: 5.6412 L22: 3.4226 REMARK 3 L33: 4.5985 L12: 1.9636 REMARK 3 L13: 2.6138 L23: 1.2725 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: -0.0957 S13: -0.0853 REMARK 3 S21: 0.4701 S22: 0.1682 S23: -0.3439 REMARK 3 S31: -0.1016 S32: 0.2287 S33: -0.2052 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 11 THROUGH 15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.0182 19.4550 3.0493 REMARK 3 T TENSOR REMARK 3 T11: 0.3259 T22: 0.2135 REMARK 3 T33: 0.1764 T12: 0.0252 REMARK 3 T13: 0.0128 T23: 0.0461 REMARK 3 L TENSOR REMARK 3 L11: 2.1641 L22: 7.1558 REMARK 3 L33: 2.0240 L12: 1.1819 REMARK 3 L13: 3.8928 L23: 6.7854 REMARK 3 S TENSOR REMARK 3 S11: -0.0917 S12: 0.1449 S13: 0.2060 REMARK 3 S21: -1.0017 S22: 0.3061 S23: 0.0652 REMARK 3 S31: -1.7100 S32: -0.5732 S33: -0.2514 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'F' AND (RESID 16 THROUGH 20 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.2006 10.4088 -8.7198 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.2655 REMARK 3 T33: 0.3766 T12: -0.0195 REMARK 3 T13: -0.0471 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 7.5743 L22: 9.6130 REMARK 3 L33: 7.2181 L12: -0.9849 REMARK 3 L13: 5.2517 L23: -0.7159 REMARK 3 S TENSOR REMARK 3 S11: -0.3422 S12: 1.0061 S13: -2.2581 REMARK 3 S21: -0.5308 S22: 0.8706 S23: 0.5051 REMARK 3 S31: 0.3255 S32: -0.0634 S33: -0.4698 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6ML7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-SEP-18. REMARK 100 THE DEPOSITION ID IS D_1000237101. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-003 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30550 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 28.014 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 6ML6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG2000 MME, 0.1 M POTASSIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 34.35350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 HIS A 516 REMARK 465 THR A 517 REMARK 465 ALA A 518 REMARK 465 ASP A 519 REMARK 465 TYR A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 390 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 404 CG CD1 CD2 REMARK 470 ARG A 412 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 513 CG CD CE NZ REMARK 470 GLU A 514 CG CD OE1 OE2 REMARK 470 LYS A 515 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG F 18 O3' DG F 18 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 5 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DG E 12 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 379 SG REMARK 620 2 CYS A 382 SG 118.5 REMARK 620 3 HIS A 395 NE2 115.3 96.5 REMARK 620 4 HIS A 399 NE2 103.7 113.4 109.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 407 SG REMARK 620 2 CYS A 410 SG 121.5 REMARK 620 3 HIS A 423 NE2 119.4 93.0 REMARK 620 4 HIS A 427 NE2 115.4 110.5 91.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 603 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 CYS A 438 SG 117.2 REMARK 620 3 HIS A 451 NE2 108.2 109.8 REMARK 620 4 HIS A 455 NE2 104.5 116.9 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 463 SG REMARK 620 2 CYS A 466 SG 120.1 REMARK 620 3 HIS A 479 NE2 108.8 98.6 REMARK 620 4 HIS A 483 NE2 102.0 117.5 109.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 605 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 491 SG REMARK 620 2 CYS A 494 SG 115.8 REMARK 620 3 HIS A 507 NE2 107.5 104.3 REMARK 620 4 HIS A 511 NE2 103.3 124.0 99.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO E 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG E 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG E 404 DBREF 6ML7 A 375 519 UNP Q80X44 ZBT24_MOUSE 375 519 DBREF 6ML7 E 1 20 PDB 6ML7 6ML7 1 20 DBREF 6ML7 F 1 20 PDB 6ML7 6ML7 1 20 SEQADV 6ML7 GLY A 370 UNP Q80X44 EXPRESSION TAG SEQADV 6ML7 PRO A 371 UNP Q80X44 EXPRESSION TAG SEQADV 6ML7 LEU A 372 UNP Q80X44 EXPRESSION TAG SEQADV 6ML7 GLY A 373 UNP Q80X44 EXPRESSION TAG SEQADV 6ML7 SER A 374 UNP Q80X44 EXPRESSION TAG SEQADV 6ML7 TYR A 520 UNP Q80X44 EXPRESSION TAG SEQRES 1 A 151 GLY PRO LEU GLY SER LYS SER PHE THR CYS ASP GLN CYS SEQRES 2 A 151 GLY LYS TYR PHE SER GLN LYS ARG GLN LEU LYS SER HIS SEQRES 3 A 151 TYR ARG VAL HIS THR GLY HIS SER LEU PRO GLU CYS SER SEQRES 4 A 151 HIS CYS HIS ARG LYS PHE MET ASP VAL SER GLN LEU LYS SEQRES 5 A 151 LYS HIS LEU ARG THR HIS THR GLY GLU LYS PRO PHE THR SEQRES 6 A 151 CYS GLU ILE CYS GLY LYS SER PHE THR ALA LYS SER SER SEQRES 7 A 151 LEU GLN THR HIS ILE ARG ILE HIS ARG GLY GLU LYS PRO SEQRES 8 A 151 TYR SER CYS SER ILE CYS GLY LYS CYS PHE SER ASP SER SEQRES 9 A 151 SER ALA LYS ARG ARG HIS CYS ILE LEU HIS THR GLY LYS SEQRES 10 A 151 LYS PRO PHE SER CYS PRO GLU CYS GLY LEU GLN PHE ALA SEQRES 11 A 151 ARG LEU ASP ASN LEU LYS ALA HIS LEU LYS ILE HIS SER SEQRES 12 A 151 LYS GLU LYS HIS THR ALA ASP TYR SEQRES 1 E 20 DA DC DG DC DA DG DG DT DC DC DT DG DG SEQRES 2 E 20 DA 5CM DG DA DA DT DT SEQRES 1 F 20 DT DA DA DT DT DC DG DT DC DC DA DG DG SEQRES 2 F 20 DA DC DC DT DG DC DG HET 5CM E 15 20 HET ZN A 601 1 HET ZN A 602 1 HET ZN A 603 1 HET ZN A 604 1 HET ZN A 605 1 HET EDO A 606 4 HET EDO E 401 4 HET EDO E 402 4 HET PEG E 403 7 HET PEG E 404 7 HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 2 5CM C10 H16 N3 O7 P FORMUL 4 ZN 5(ZN 2+) FORMUL 9 EDO 3(C2 H6 O2) FORMUL 12 PEG 2(C4 H10 O3) FORMUL 14 HOH *309(H2 O) HELIX 1 AA1 GLN A 388 TYR A 396 1 9 HELIX 2 AA2 TYR A 396 GLY A 401 1 6 HELIX 3 AA3 ASP A 416 GLY A 429 1 14 HELIX 4 AA4 ALA A 444 GLY A 457 1 14 HELIX 5 AA5 ASP A 472 LEU A 482 1 11 HELIX 6 AA6 HIS A 483 GLY A 485 5 3 HELIX 7 AA7 ARG A 500 LYS A 515 1 16 SHEET 1 AA1 2 PHE A 377 THR A 378 0 SHEET 2 AA1 2 TYR A 385 PHE A 386 -1 O PHE A 386 N PHE A 377 SHEET 1 AA2 2 PHE A 433 THR A 434 0 SHEET 2 AA2 2 SER A 441 PHE A 442 -1 O PHE A 442 N PHE A 433 SHEET 1 AA3 2 TYR A 461 SER A 462 0 SHEET 2 AA3 2 CYS A 469 PHE A 470 -1 O PHE A 470 N TYR A 461 SHEET 1 AA4 2 PHE A 489 SER A 490 0 SHEET 2 AA4 2 GLN A 497 PHE A 498 -1 O PHE A 498 N PHE A 489 LINK O3' DA E 14 P 5CM E 15 1555 1555 1.61 LINK O3' 5CM E 15 P DG E 16 1555 1555 1.60 LINK SG CYS A 379 ZN ZN A 601 1555 1555 2.30 LINK SG CYS A 382 ZN ZN A 601 1555 1555 2.26 LINK NE2 HIS A 395 ZN ZN A 601 1555 1555 2.06 LINK NE2 HIS A 399 ZN ZN A 601 1555 1555 2.04 LINK SG CYS A 407 ZN ZN A 602 1555 1555 2.28 LINK SG CYS A 410 ZN ZN A 602 1555 1555 2.22 LINK NE2 HIS A 423 ZN ZN A 602 1555 1555 2.09 LINK NE2 HIS A 427 ZN ZN A 602 1555 1555 2.07 LINK SG CYS A 435 ZN ZN A 603 1555 1555 2.30 LINK SG CYS A 438 ZN ZN A 603 1555 1555 2.28 LINK NE2 HIS A 451 ZN ZN A 603 1555 1555 2.04 LINK NE2 HIS A 455 ZN ZN A 603 1555 1555 2.01 LINK SG CYS A 463 ZN ZN A 604 1555 1555 2.32 LINK SG CYS A 466 ZN ZN A 604 1555 1555 2.31 LINK NE2 HIS A 479 ZN ZN A 604 1555 1555 2.05 LINK NE2 HIS A 483 ZN ZN A 604 1555 1555 2.04 LINK SG CYS A 491 ZN ZN A 605 1555 1555 2.29 LINK SG CYS A 494 ZN ZN A 605 1555 1555 2.28 LINK NE2 HIS A 507 ZN ZN A 605 1555 1555 2.05 LINK NE2 HIS A 511 ZN ZN A 605 1555 1555 2.01 CISPEP 1 GLY A 373 SER A 374 0 0.67 SITE 1 AC1 4 CYS A 379 CYS A 382 HIS A 395 HIS A 399 SITE 1 AC2 4 CYS A 407 CYS A 410 HIS A 423 HIS A 427 SITE 1 AC3 4 CYS A 435 CYS A 438 HIS A 451 HIS A 455 SITE 1 AC4 4 CYS A 463 CYS A 466 HIS A 479 HIS A 483 SITE 1 AC5 4 CYS A 491 CYS A 494 HIS A 507 HIS A 511 SITE 1 AC6 2 GLU A 493 HOH A 713 SITE 1 AC7 5 LYS A 440 HIS A 451 HOH A 796 DT E 8 SITE 2 AC7 5 DC E 9 SITE 1 AC8 5 DA E 1 DT E 19 DT E 20 DT F 1 SITE 2 AC8 5 DG F 20 SITE 1 AC9 8 DG E 7 DT E 8 DC E 9 DC E 10 SITE 2 AC9 8 HOH E 528 HOH E 536 DA F 14 HOH F 108 SITE 1 AD1 9 DT E 11 DG E 12 DG E 13 HOH E 514 SITE 2 AD1 9 HOH E 533 HOH E 553 DA F 11 HOH F 114 SITE 3 AD1 9 HOH F 127 CRYST1 46.130 68.707 48.448 90.00 92.58 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021678 0.000000 0.000975 0.00000 SCALE2 0.000000 0.014555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020661 0.00000