HEADER ISOMERASE 28-SEP-18 6MLW TITLE CRYSTAL STRUCTURE OF X. CITRI PHOSPHOGLUCOMUTASE IN COMPLEX WITH 2- TITLE 2 FLUORO MANNOSYL-1-METHYL-PHOSPHONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOGLUCOMUTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XANTHOMONAS CITRI; SOURCE 3 ORGANISM_TAXID: 346; SOURCE 4 GENE: XANA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENZYME, CARBOHYDRATE BIOSYNTHESIS, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.BEAMER,K.STIERS REVDAT 5 11-OCT-23 6MLW 1 REMARK REVDAT 4 29-JUL-20 6MLW 1 REMARK SITE REVDAT 3 27-NOV-19 6MLW 1 REMARK REVDAT 2 14-AUG-19 6MLW 1 JRNL REVDAT 1 31-JUL-19 6MLW 0 JRNL AUTH J.S.ZHU,K.M.STIERS,E.SOLEIMANI,B.R.GROVES,L.J.BEAMER, JRNL AUTH 2 D.L.JAKEMAN JRNL TITL INHIBITORY EVALUATION OF ALPHA PMM/PGM FROMPSEUDOMONAS JRNL TITL 2 AERUGINOSA: CHEMICAL SYNTHESIS, ENZYME KINETICS, AND PROTEIN JRNL TITL 3 CRYSTALLOGRAPHIC STUDY. JRNL REF J.ORG.CHEM. V. 84 9627 2019 JRNL REFN ISSN 0022-3263 JRNL PMID 31264865 JRNL DOI 10.1021/ACS.JOC.9B01305 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.320 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 33478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 3069 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.4500 - 5.3200 1.00 2712 151 0.1446 0.1561 REMARK 3 2 5.3200 - 4.2200 1.00 2715 148 0.1167 0.1818 REMARK 3 3 4.2200 - 3.6900 1.00 2697 137 0.1310 0.1811 REMARK 3 4 3.6900 - 3.3500 1.00 2741 130 0.1423 0.2114 REMARK 3 5 3.3500 - 3.1100 1.00 2687 167 0.1587 0.2516 REMARK 3 6 3.1100 - 2.9300 1.00 2719 127 0.1731 0.2226 REMARK 3 7 2.9300 - 2.7800 1.00 2759 124 0.1856 0.2376 REMARK 3 8 2.7800 - 2.6600 1.00 2733 150 0.1923 0.2625 REMARK 3 9 2.6600 - 2.5600 1.00 2691 154 0.1929 0.2735 REMARK 3 10 2.5600 - 2.4700 1.00 2735 138 0.1955 0.2091 REMARK 3 11 2.4700 - 2.3900 1.00 2723 131 0.2087 0.3105 REMARK 3 12 2.3900 - 2.3300 1.00 2719 132 0.2214 0.2764 REMARK 3 13 2.3300 - 2.2600 1.00 2728 129 0.2405 0.2970 REMARK 3 14 2.2600 - 2.2100 1.00 2736 164 0.2508 0.3355 REMARK 3 15 2.2100 - 2.1600 1.00 2725 127 0.2585 0.3390 REMARK 3 16 2.1600 - 2.1100 0.99 2702 126 0.2657 0.3629 REMARK 3 17 2.1100 - 2.0700 1.00 2691 166 0.2726 0.3711 REMARK 3 18 2.0700 - 2.0300 0.99 2730 139 0.2816 0.3908 REMARK 3 19 2.0300 - 2.0000 1.00 2659 146 0.2909 0.3365 REMARK 3 20 2.0000 - 1.9600 1.00 2807 107 0.2950 0.3135 REMARK 3 21 1.9600 - 1.9300 0.99 2706 153 0.3143 0.4067 REMARK 3 22 1.9300 - 1.9000 0.96 2546 123 0.3332 0.3449 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.281 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.654 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3551 REMARK 3 ANGLE : 0.870 4829 REMARK 3 CHIRALITY : 0.051 535 REMARK 3 PLANARITY : 0.006 639 REMARK 3 DIHEDRAL : 4.544 2893 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 325 THROUGH 386 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.3606 59.6452 25.2744 REMARK 3 T TENSOR REMARK 3 T11: 0.1543 T22: 0.1297 REMARK 3 T33: 0.1675 T12: -0.0183 REMARK 3 T13: 0.0220 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.6344 L22: 0.4615 REMARK 3 L33: 1.8226 L12: -0.2312 REMARK 3 L13: 0.1705 L23: -0.4670 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: 0.0557 S13: -0.0643 REMARK 3 S21: -0.0818 S22: -0.0331 S23: -0.0604 REMARK 3 S31: -0.0274 S32: 0.0131 S33: 0.0413 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 387 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3085 64.2871 11.4899 REMARK 3 T TENSOR REMARK 3 T11: 0.1357 T22: 0.1600 REMARK 3 T33: 0.1601 T12: -0.0191 REMARK 3 T13: -0.0169 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 3.1971 L22: 2.5990 REMARK 3 L33: 4.8165 L12: 0.2556 REMARK 3 L13: -0.1602 L23: 0.6961 REMARK 3 S TENSOR REMARK 3 S11: -0.0298 S12: 0.1888 S13: -0.2339 REMARK 3 S21: -0.1567 S22: 0.1638 S23: -0.0529 REMARK 3 S31: 0.0453 S32: -0.0037 S33: -0.1119 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 22 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.8268 39.6007 19.5872 REMARK 3 T TENSOR REMARK 3 T11: 0.1525 T22: 0.1844 REMARK 3 T33: 0.1699 T12: 0.0250 REMARK 3 T13: 0.0002 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 0.8068 L22: 1.9215 REMARK 3 L33: 2.8351 L12: -0.0389 REMARK 3 L13: -0.3708 L23: 1.9027 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.0410 S13: -0.0683 REMARK 3 S21: 0.0156 S22: 0.0649 S23: -0.0648 REMARK 3 S31: 0.1812 S32: 0.1349 S33: -0.0217 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.5516 52.0575 33.5152 REMARK 3 T TENSOR REMARK 3 T11: 0.1453 T22: 0.2166 REMARK 3 T33: 0.1582 T12: -0.0011 REMARK 3 T13: 0.0085 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 0.3253 L22: 1.2174 REMARK 3 L33: 1.0558 L12: -0.5295 REMARK 3 L13: -0.0810 L23: -0.6636 REMARK 3 S TENSOR REMARK 3 S11: -0.0027 S12: 0.0439 S13: -0.0623 REMARK 3 S21: -0.0180 S22: -0.0468 S23: -0.0054 REMARK 3 S31: -0.0049 S32: -0.0231 S33: 0.0508 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 324 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.2428 61.9558 19.0268 REMARK 3 T TENSOR REMARK 3 T11: 0.1605 T22: 0.2325 REMARK 3 T33: 0.1930 T12: -0.0166 REMARK 3 T13: 0.0168 T23: -0.0476 REMARK 3 L TENSOR REMARK 3 L11: 2.8906 L22: 2.8446 REMARK 3 L33: 1.3260 L12: 0.0560 REMARK 3 L13: 0.0363 L23: -0.8466 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: 0.1130 S13: -0.1330 REMARK 3 S21: -0.1726 S22: 0.1077 S23: -0.2137 REMARK 3 S31: 0.0255 S32: 0.1090 S33: -0.0454 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MLW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237186. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000001 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33637 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 57.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5BMN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 8000, 0.2 M MGCL2, 0.1 M REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.89050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.45450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.29350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 86.45450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.89050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.29350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 37 CG CD OE1 NE2 REMARK 470 GLN A 144 CG CD OE1 NE2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 470 ASN A 417 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 824 O HOH A 1005 1.85 REMARK 500 O HOH A 743 O HOH A 847 1.96 REMARK 500 OE2 GLU A 329 O HOH A 601 1.98 REMARK 500 O HOH A 1090 O HOH A 1139 1.98 REMARK 500 O HOH A 761 O HOH A 799 1.98 REMARK 500 ND2 ASN A 444 O HOH A 602 2.02 REMARK 500 O HOH A 738 O HOH A 1034 2.04 REMARK 500 O PRO A 139 O HOH A 603 2.07 REMARK 500 O HOH A 1111 O HOH A 1137 2.07 REMARK 500 O HOH A 1130 O HOH A 1140 2.11 REMARK 500 O HOH A 825 O HOH A 1062 2.12 REMARK 500 O HOH A 898 O HOH A 969 2.13 REMARK 500 O HOH A 858 O HOH A 1036 2.14 REMARK 500 NH1 ARG A 62 O HOH A 604 2.19 REMARK 500 O LEU A 267 O HOH A 605 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1033 O HOH A 1094 3655 1.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SEP A 97 -115.84 50.88 REMARK 500 PRO A 100 177.60 -58.80 REMARK 500 ARG A 110 -148.99 -104.72 REMARK 500 ASN A 211 88.46 -158.10 REMARK 500 PHE A 240 34.72 30.39 REMARK 500 THR A 282 -43.47 -135.34 REMARK 500 SER A 322 37.73 -96.28 REMARK 500 ALA A 323 32.50 72.13 REMARK 500 PHE A 330 45.85 -103.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1142 DISTANCE = 6.67 ANGSTROMS REMARK 525 HOH A1143 DISTANCE = 6.84 ANGSTROMS REMARK 525 HOH A1144 DISTANCE = 7.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP A 97 O3P REMARK 620 2 ASP A 237 OD2 106.8 REMARK 620 3 ASP A 239 OD1 101.3 93.0 REMARK 620 4 ASP A 241 OD1 160.3 91.9 83.6 REMARK 620 5 HOH A 652 O 67.0 167.9 98.4 93.5 REMARK 620 6 HOH A 838 O 83.4 89.9 173.5 90.5 79.2 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6MLH RELATED DB: PDB REMARK 900 RELATED ID: 6MLF RELATED DB: PDB DBREF 6MLW A 1 448 UNP Q8PGN7 Q8PGN7_XANAC 3 450 SEQADV 6MLW MET A -19 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW GLY A -18 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW SER A -17 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW SER A -16 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -15 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -14 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -13 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -12 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -11 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A -10 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW SER A -9 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW SER A -8 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW GLY A -7 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW LEU A -6 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW VAL A -5 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW PRO A -4 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW ARG A -3 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW GLY A -2 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW SER A -1 UNP Q8PGN7 EXPRESSION TAG SEQADV 6MLW HIS A 0 UNP Q8PGN7 EXPRESSION TAG SEQRES 1 A 468 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 468 LEU VAL PRO ARG GLY SER HIS MET THR LEU PRO ALA PHE SEQRES 3 A 468 LYS ALA TYR ASP ILE ARG GLY ARG VAL PRO ASP GLU LEU SEQRES 4 A 468 ASN GLU ASP LEU ALA ARG ARG ILE GLY VAL ALA LEU ALA SEQRES 5 A 468 ALA GLN LEU ASP GLN GLY PRO VAL VAL LEU GLY HIS ASP SEQRES 6 A 468 VAL ARG LEU ALA SER PRO ALA LEU GLN GLU ALA LEU SER SEQRES 7 A 468 ALA GLY LEU ARG ALA SER GLY ARG ASP VAL ILE ASP ILE SEQRES 8 A 468 GLY LEU CYS GLY THR GLU GLU VAL TYR PHE GLN THR ASP SEQRES 9 A 468 TYR LEU LYS ALA ALA GLY GLY VAL MET VAL THR ALA SEP SEQRES 10 A 468 HIS ASN PRO MET ASP TYR ASN GLY MET LYS LEU VAL ARG SEQRES 11 A 468 GLU GLN ALA ARG PRO ILE SER SER ASP THR GLY LEU PHE SEQRES 12 A 468 ALA ILE ARG ASP THR VAL ALA ALA ASP THR ALA ALA PRO SEQRES 13 A 468 GLY GLU PRO THR ALA SER GLU GLN SER ARG THR ASP LYS SEQRES 14 A 468 THR ALA TYR LEU GLU HIS LEU LEU SER TYR VAL ASP ARG SEQRES 15 A 468 SER THR LEU LYS PRO LEU LYS LEU VAL VAL ASN ALA GLY SEQRES 16 A 468 ASN GLY GLY ALA GLY LEU ILE VAL ASP LEU LEU ALA PRO SEQRES 17 A 468 HIS LEU PRO PHE GLU PHE VAL ARG VAL PHE HIS GLU PRO SEQRES 18 A 468 ASP GLY ASN PHE PRO ASN GLY ILE PRO ASN PRO LEU LEU SEQRES 19 A 468 PRO GLU ASN ARG ASP ALA THR ALA LYS ALA VAL LYS ASP SEQRES 20 A 468 ASN GLY ALA ASP PHE GLY ILE ALA TRP ASP GLY ASP PHE SEQRES 21 A 468 ASP ARG CYS PHE PHE PHE ASP HIS THR GLY ARG PHE ILE SEQRES 22 A 468 GLU GLY TYR TYR LEU VAL GLY LEU LEU ALA GLN ALA ILE SEQRES 23 A 468 LEU ALA LYS GLN PRO GLY GLY LYS VAL VAL HIS ASP PRO SEQRES 24 A 468 ARG LEU THR TRP ASN THR VAL GLU GLN VAL GLU GLU ALA SEQRES 25 A 468 GLY GLY ILE PRO VAL LEU CYS LYS SER GLY HIS ALA PHE SEQRES 26 A 468 ILE LYS GLU LYS MET ARG SER GLU ASN ALA VAL TYR GLY SEQRES 27 A 468 GLY GLU MET SER ALA HIS HIS TYR PHE ARG GLU PHE ALA SEQRES 28 A 468 TYR ALA ASP SER GLY MET ILE PRO TRP LEU LEU ILE ALA SEQRES 29 A 468 GLU LEU VAL SER GLN SER GLY ARG SER LEU ALA ASP LEU SEQRES 30 A 468 VAL GLU ALA ARG MET GLN LYS PHE PRO CYS SER GLY GLU SEQRES 31 A 468 ILE ASN PHE LYS VAL ALA ASP ALA LYS ALA SER VAL ALA SEQRES 32 A 468 ARG VAL MET GLU HIS TYR ALA SER LEU SER PRO GLU LEU SEQRES 33 A 468 ASP TYR THR ASP GLY ILE SER ALA ASP PHE GLY GLN TRP SEQRES 34 A 468 ARG PHE ASN LEU ARG SER SER ASN THR GLU PRO LEU LEU SEQRES 35 A 468 ARG LEU ASN VAL GLU THR ARG GLY ASP ALA ALA LEU LEU SEQRES 36 A 468 GLU THR ARG THR GLN GLU ILE SER ASN LEU LEU ARG GLY MODRES 6MLW SEP A 97 SER MODIFIED RESIDUE HET SEP A 97 10 HET MG A 501 1 HET JVA A 502 16 HETNAM SEP PHOSPHOSERINE HETNAM MG MAGNESIUM ION HETNAM JVA 2,6-ANHYDRO-5,7-DIDEOXY-5-FLUORO-7-PHOSPHONO-D-GLYCERO- HETNAM 2 JVA D-MANNO-HEPTITOL HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 MG MG 2+ FORMUL 3 JVA C7 H14 F O7 P FORMUL 4 HOH *544(H2 O) HELIX 1 AA1 ASN A 20 LEU A 35 1 16 HELIX 2 AA2 ALA A 49 SER A 64 1 16 HELIX 3 AA3 GLY A 75 LEU A 86 1 12 HELIX 4 AA4 ARG A 110 ARG A 114 5 5 HELIX 5 AA5 SER A 117 THR A 120 5 4 HELIX 6 AA6 GLY A 121 ASP A 132 1 12 HELIX 7 AA7 LYS A 149 SER A 158 1 10 HELIX 8 AA8 TYR A 159 VAL A 160 5 2 HELIX 9 AA9 ASP A 161 LEU A 165 5 5 HELIX 10 AB1 GLY A 178 ALA A 187 1 10 HELIX 11 AB2 PRO A 188 LEU A 190 5 3 HELIX 12 AB3 LEU A 214 GLY A 229 1 16 HELIX 13 AB4 GLU A 254 GLN A 270 1 17 HELIX 14 AB5 THR A 282 ALA A 292 1 11 HELIX 15 AB6 GLY A 302 ASN A 314 1 13 HELIX 16 AB7 GLU A 329 ALA A 331 5 3 HELIX 17 AB8 MET A 337 GLY A 351 1 15 HELIX 18 AB9 SER A 353 PHE A 365 1 13 HELIX 19 AC1 ASP A 377 ALA A 390 1 14 HELIX 20 AC2 SER A 391 SER A 393 5 3 HELIX 21 AC3 ASP A 431 ARG A 447 1 17 SHEET 1 AA1 6 ILE A 11 ARG A 14 0 SHEET 2 AA1 6 TYR A 103 VAL A 109 -1 O ASN A 104 N GLY A 13 SHEET 3 AA1 6 GLY A 90 VAL A 94 -1 N GLY A 91 O VAL A 109 SHEET 4 AA1 6 VAL A 40 HIS A 44 1 N VAL A 41 O VAL A 92 SHEET 5 AA1 6 VAL A 68 LEU A 73 1 O ILE A 69 N VAL A 40 SHEET 6 AA1 6 GLU A 143 SER A 145 1 O GLN A 144 N ASP A 70 SHEET 1 AA2 4 GLU A 193 VAL A 197 0 SHEET 2 AA2 4 LYS A 169 ASN A 173 1 N VAL A 172 O VAL A 197 SHEET 3 AA2 4 PHE A 232 TRP A 236 1 O ILE A 234 N ASN A 173 SHEET 4 AA2 4 CYS A 243 PHE A 246 -1 O PHE A 246 N GLY A 233 SHEET 1 AA3 4 ILE A 295 LEU A 298 0 SHEET 2 AA3 4 LYS A 274 HIS A 277 1 N VAL A 275 O ILE A 295 SHEET 3 AA3 4 TYR A 317 GLU A 320 1 O GLY A 319 N VAL A 276 SHEET 4 AA3 4 HIS A 324 PHE A 327 -1 O TYR A 326 N GLY A 318 SHEET 1 AA4 5 ILE A 371 PHE A 373 0 SHEET 2 AA4 5 LEU A 422 THR A 428 -1 O LEU A 424 N ILE A 371 SHEET 3 AA4 5 TRP A 409 SER A 415 -1 N ARG A 414 O ARG A 423 SHEET 4 AA4 5 ILE A 402 ASP A 405 -1 N ALA A 404 O PHE A 411 SHEET 5 AA4 5 GLU A 395 ASP A 397 -1 N ASP A 397 O SER A 403 LINK C ALA A 96 N SEP A 97 1555 1555 1.33 LINK C SEP A 97 N HIS A 98 1555 1555 1.33 LINK O3P SEP A 97 MG MG A 501 1555 1555 2.17 LINK OD2 ASP A 237 MG MG A 501 1555 1555 1.93 LINK OD1 ASP A 239 MG MG A 501 1555 1555 2.12 LINK OD1 ASP A 241 MG MG A 501 1555 1555 2.03 LINK MG MG A 501 O HOH A 652 1555 1555 2.37 LINK MG MG A 501 O HOH A 838 1555 1555 2.21 CISPEP 1 VAL A 15 PRO A 16 0 1.17 CRYST1 43.781 54.587 172.909 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022841 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018319 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005783 0.00000