HEADER TRANSFERASE/ANTIBIOTIC 01-OCT-18 6MN2
TITLE CRYSTAL STRUCTURE OF META-AAC0038, AN ENVIRONMENTAL AMINOGLYCOSIDE
TITLE 2 RESISTANCE ENZYME, MUTANT H168A IN ABORTIVE COMPLEX WITH SISOMICIN-
TITLE 3 COA
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: AMINOGLYCOSIDE N(3)-ACETYLTRANSFERASE;
COMPND 3 CHAIN: A, B;
COMPND 4 EC: 2.3.1.81;
COMPND 5 ENGINEERED: YES;
COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM;
SOURCE 3 ORGANISM_TAXID: 77133;
SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562;
SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC;
SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG53
KEYWDS ANTIBIOTIC_NAT FAMILY, ACETYLTRANSFERASE, AMINOGLYCOSIDE, ANTIBIOTIC
KEYWDS 2 RESISTANCE, METAGENOME, SOIL, COENZYME A, SISOMICIN, CSGID,
KEYWDS 3 TRANSFERASE, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES,
KEYWDS 4 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID,
KEYWDS 5 TRANSFERASE-ANTIBIOTIC COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR P.J.STOGIOS,T.SKARINA,K.MICHALSKA,Z.XU,V.YIM,A.SAVCHENKO,
AUTHOR 2 A.JOACHIMIAK,K.J.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF
AUTHOR 3 INFECTIOUS DISEASES (CSGID)
REVDAT 3 11-OCT-23 6MN2 1 REMARK
REVDAT 2 18-DEC-19 6MN2 1 REMARK
REVDAT 1 24-OCT-18 6MN2 0
JRNL AUTH P.J.STOGIOS
JRNL TITL CRYSTAL STRUCTURE OF META-AAC0038, AN ENVIRONMENTAL
JRNL TITL 2 AMINOGLYCOSIDE RESISTANCE ENZYME, MUTANT H168A IN ABORTIVE
JRNL TITL 3 COMPLEX WITH SISOMICIN-COA
JRNL REF TO BE PUBLISHED
JRNL REFN
REMARK 2
REMARK 2 RESOLUTION. 2.74 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX (1.14_3260: ???)
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 45290
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.250
REMARK 3 R VALUE (WORKING SET) : 0.249
REMARK 3 FREE R VALUE : 0.270
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010
REMARK 3 FREE R VALUE TEST SET COUNT : 2267
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 29.2052 - 6.8869 1.00 2693 149 0.1796 0.2003
REMARK 3 2 6.8869 - 5.4781 1.00 2673 146 0.1920 0.2033
REMARK 3 3 5.4781 - 4.7891 1.00 2713 143 0.1753 0.2257
REMARK 3 4 4.7891 - 4.3528 1.00 2709 137 0.1809 0.1978
REMARK 3 5 4.3528 - 4.0416 1.00 2699 144 0.1977 0.2325
REMARK 3 6 4.0416 - 3.8039 0.98 2640 131 0.2703 0.2734
REMARK 3 7 3.8039 - 3.6137 0.99 2669 145 0.2957 0.3029
REMARK 3 8 3.6137 - 3.4567 1.00 2672 134 0.2866 0.3186
REMARK 3 9 3.4567 - 3.3238 1.00 2702 144 0.2983 0.2701
REMARK 3 10 3.3238 - 3.2093 1.00 2715 138 0.2931 0.3320
REMARK 3 11 3.2093 - 3.1090 1.00 2676 142 0.3014 0.3195
REMARK 3 12 3.1090 - 3.0203 1.00 2729 150 0.3154 0.3210
REMARK 3 13 3.0203 - 2.9408 1.00 2657 138 0.3389 0.3512
REMARK 3 14 2.9408 - 2.8691 1.00 2679 144 0.3570 0.4022
REMARK 3 15 2.8691 - 2.8040 1.00 2723 142 0.3694 0.3697
REMARK 3 16 2.8040 - 2.7443 0.99 2674 140 0.3641 0.3831
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.350
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.015 4267
REMARK 3 ANGLE : 1.086 5813
REMARK 3 CHIRALITY : 0.049 609
REMARK 3 PLANARITY : 0.006 745
REMARK 3 DIHEDRAL : 23.373 1597
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 10
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 62 )
REMARK 3 ORIGIN FOR THE GROUP (A): 211.8635 277.0982 -0.9842
REMARK 3 T TENSOR
REMARK 3 T11: 0.1423 T22: 0.2915
REMARK 3 T33: 0.2237 T12: -0.0326
REMARK 3 T13: -0.0073 T23: 0.0074
REMARK 3 L TENSOR
REMARK 3 L11: 1.4025 L22: 6.0951
REMARK 3 L33: 4.1384 L12: -1.3527
REMARK 3 L13: 0.5660 L23: -0.0518
REMARK 3 S TENSOR
REMARK 3 S11: 0.0173 S12: 0.0765 S13: 0.0703
REMARK 3 S21: -0.2384 S22: -0.0834 S23: -0.3062
REMARK 3 S31: 0.2391 S32: 0.0945 S33: 0.0589
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 76 )
REMARK 3 ORIGIN FOR THE GROUP (A): 181.9772 288.4829 2.2252
REMARK 3 T TENSOR
REMARK 3 T11: 0.3235 T22: 0.5693
REMARK 3 T33: 0.4974 T12: 0.0893
REMARK 3 T13: 0.1067 T23: 0.1932
REMARK 3 L TENSOR
REMARK 3 L11: 6.3821 L22: 0.9341
REMARK 3 L33: 4.4593 L12: -0.8408
REMARK 3 L13: 1.6089 L23: 0.9387
REMARK 3 S TENSOR
REMARK 3 S11: -0.2336 S12: 0.5590 S13: 0.4202
REMARK 3 S21: 0.5644 S22: 0.3178 S23: -0.2041
REMARK 3 S31: -0.9704 S32: -1.2057 S33: -0.1358
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 173 )
REMARK 3 ORIGIN FOR THE GROUP (A): 194.5652 276.9299 5.5635
REMARK 3 T TENSOR
REMARK 3 T11: 0.2182 T22: 0.2735
REMARK 3 T33: 0.2932 T12: 0.0175
REMARK 3 T13: 0.0345 T23: 0.0598
REMARK 3 L TENSOR
REMARK 3 L11: 3.2809 L22: 0.2989
REMARK 3 L33: 3.2530 L12: 0.8322
REMARK 3 L13: 0.0300 L23: 0.0814
REMARK 3 S TENSOR
REMARK 3 S11: -0.0265 S12: -0.2172 S13: -0.0592
REMARK 3 S21: 0.0974 S22: 0.1127 S23: 0.1491
REMARK 3 S31: -0.2145 S32: -0.3598 S33: -0.0832
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 262 )
REMARK 3 ORIGIN FOR THE GROUP (A): 196.5888 283.6986 16.8132
REMARK 3 T TENSOR
REMARK 3 T11: 0.3278 T22: 0.3185
REMARK 3 T33: 0.3810 T12: -0.0268
REMARK 3 T13: 0.0562 T23: 0.0144
REMARK 3 L TENSOR
REMARK 3 L11: 5.1329 L22: 0.6969
REMARK 3 L33: 2.9873 L12: 0.1984
REMARK 3 L13: 0.3146 L23: 0.5080
REMARK 3 S TENSOR
REMARK 3 S11: 0.2203 S12: -0.7850 S13: 0.5088
REMARK 3 S21: 0.2199 S22: -0.0375 S23: 0.0196
REMARK 3 S31: -0.3106 S32: -0.1926 S33: -0.1732
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 62 )
REMARK 3 ORIGIN FOR THE GROUP (A): 181.4303 285.3245 -18.7513
REMARK 3 T TENSOR
REMARK 3 T11: 0.2388 T22: 0.7487
REMARK 3 T33: 0.5178 T12: 0.0362
REMARK 3 T13: -0.0032 T23: 0.2009
REMARK 3 L TENSOR
REMARK 3 L11: 1.6765 L22: 4.1770
REMARK 3 L33: 3.5018 L12: 0.8518
REMARK 3 L13: -0.4976 L23: 0.3606
REMARK 3 S TENSOR
REMARK 3 S11: -0.0034 S12: 0.2984 S13: 0.2882
REMARK 3 S21: 0.0580 S22: -0.0954 S23: 0.6783
REMARK 3 S31: -0.1701 S32: -0.6811 S33: 0.1058
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 87 )
REMARK 3 ORIGIN FOR THE GROUP (A): 213.1911 279.1878 -19.6089
REMARK 3 T TENSOR
REMARK 3 T11: 0.2958 T22: 0.3712
REMARK 3 T33: 0.3520 T12: -0.0096
REMARK 3 T13: 0.0324 T23: -0.0033
REMARK 3 L TENSOR
REMARK 3 L11: 5.4678 L22: 1.8540
REMARK 3 L33: 3.4822 L12: 1.2283
REMARK 3 L13: 0.6778 L23: -0.2347
REMARK 3 S TENSOR
REMARK 3 S11: 0.0435 S12: 0.5140 S13: 0.4885
REMARK 3 S21: -0.0477 S22: 0.0906 S23: -0.1563
REMARK 3 S31: -0.1511 S32: 0.3371 S33: -0.1305
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 189 )
REMARK 3 ORIGIN FOR THE GROUP (A): 197.4164 279.4389 -28.5739
REMARK 3 T TENSOR
REMARK 3 T11: 0.3434 T22: 0.6183
REMARK 3 T33: 0.3452 T12: -0.0598
REMARK 3 T13: -0.0051 T23: 0.1127
REMARK 3 L TENSOR
REMARK 3 L11: 2.1406 L22: 1.4216
REMARK 3 L33: 3.3140 L12: -1.1414
REMARK 3 L13: -0.5490 L23: 0.1055
REMARK 3 S TENSOR
REMARK 3 S11: 0.1944 S12: 0.8959 S13: 0.2569
REMARK 3 S21: -0.3628 S22: -0.1020 S23: -0.0281
REMARK 3 S31: -0.1257 S32: -0.4842 S33: -0.1155
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 215 )
REMARK 3 ORIGIN FOR THE GROUP (A): 208.6019 281.6903 -31.6443
REMARK 3 T TENSOR
REMARK 3 T11: 0.4935 T22: 0.5135
REMARK 3 T33: 0.5997 T12: -0.0473
REMARK 3 T13: 0.2793 T23: 0.2733
REMARK 3 L TENSOR
REMARK 3 L11: 2.5632 L22: 2.4317
REMARK 3 L33: 1.8300 L12: -0.2157
REMARK 3 L13: -0.0824 L23: -0.4490
REMARK 3 S TENSOR
REMARK 3 S11: 0.1937 S12: 0.9079 S13: 0.5852
REMARK 3 S21: -0.4336 S22: 0.3855 S23: -0.1550
REMARK 3 S31: -0.0124 S32: -0.2653 S33: -0.3090
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 236 )
REMARK 3 ORIGIN FOR THE GROUP (A): 184.4080 294.9826 -33.4103
REMARK 3 T TENSOR
REMARK 3 T11: 0.6219 T22: 1.0647
REMARK 3 T33: 0.7680 T12: 0.1667
REMARK 3 T13: 0.0526 T23: 0.4711
REMARK 3 L TENSOR
REMARK 3 L11: 6.2397 L22: 1.8699
REMARK 3 L33: 2.5804 L12: -1.4298
REMARK 3 L13: -3.2394 L23: 1.9269
REMARK 3 S TENSOR
REMARK 3 S11: 0.0241 S12: 0.4697 S13: 0.1388
REMARK 3 S21: -0.2524 S22: -0.4757 S23: -0.0961
REMARK 3 S31: -0.7552 S32: -0.1878 S33: 0.3684
REMARK 3 TLS GROUP : 10
REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 261 )
REMARK 3 ORIGIN FOR THE GROUP (A): 191.0655 289.8392 -41.6935
REMARK 3 T TENSOR
REMARK 3 T11: 0.7241 T22: 1.5537
REMARK 3 T33: 0.5570 T12: 0.1540
REMARK 3 T13: -0.0034 T23: 0.4382
REMARK 3 L TENSOR
REMARK 3 L11: 1.5303 L22: 2.7994
REMARK 3 L33: 0.0198 L12: -0.7786
REMARK 3 L13: -0.0001 L23: 0.1737
REMARK 3 S TENSOR
REMARK 3 S11: 0.2494 S12: 1.4989 S13: 0.7335
REMARK 3 S21: -0.6944 S22: 0.1405 S23: -0.1488
REMARK 3 S31: -0.2031 S32: -0.5827 S33: 0.1457
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 6MN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-18.
REMARK 100 THE DEPOSITION ID IS D_1000235556.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 24-OCT-17
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 19-BM
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000
REMARK 200 DATA SCALING SOFTWARE : HKL-3000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23797
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750
REMARK 200 RESOLUTION RANGE LOW (A) : 30.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 13.90
REMARK 200 R MERGE (I) : 0.28900
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 13.30
REMARK 200 R MERGE FOR SHELL (I) : 2.20900
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.020
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHENIX
REMARK 200 STARTING MODEL: 5HT0
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 68.58
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 0.1 M SODIUM
REMARK 280 CACODYLATE PH 6.5, 30% PEG 8K, 10 MM SISOMICIN, VAPOR DIFFUSION,
REMARK 280 SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 Y,X,-Z
REMARK 290 5555 X-Y,-Y,-Z+2/3
REMARK 290 6555 -X,-X+Y,-Z+1/3
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.70467
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.40933
REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.40933
REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.70467
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 VAL A 1
REMARK 465 SER A 2
REMARK 465 ARG A 263
REMARK 465 VAL B 1
REMARK 465 SER B 2
REMARK 465 ALA B 262
REMARK 465 ARG B 263
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 64 -155.97 62.26
REMARK 500 ARG A 141 59.69 -99.38
REMARK 500 MET A 164 91.89 -64.56
REMARK 500 ASP B 64 -154.77 59.59
REMARK 500 ARG B 141 56.37 -97.68
REMARK 500 ASP B 162 1.63 -66.20
REMARK 500 MET B 164 88.65 -66.93
REMARK 500 ASP B 214 30.06 -86.95
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH A 479 DISTANCE = 6.00 ANGSTROMS
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 306
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues COA A 301 and SIS A
REMARK 800 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residues COA B 301 and SIS B
REMARK 800 302
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 5TH0 RELATED DB: PDB
REMARK 900 RELATED ID: IDP95436 RELATED DB: TARGETTRACK
DBREF1 6MN2 A 2 263 UNP A0A059X981_9BACT
DBREF2 6MN2 A A0A059X981 2 263
DBREF1 6MN2 B 2 263 UNP A0A059X981_9BACT
DBREF2 6MN2 B A0A059X981 2 263
SEQADV 6MN2 VAL A 1 UNP A0A059X98 EXPRESSION TAG
SEQADV 6MN2 ALA A 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION
SEQADV 6MN2 VAL B 1 UNP A0A059X98 EXPRESSION TAG
SEQADV 6MN2 ALA B 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION
SEQRES 1 A 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU
SEQRES 2 A 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL
SEQRES 3 A 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL
SEQRES 4 A 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL
SEQRES 5 A 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP
SEQRES 6 A 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG
SEQRES 7 A 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER
SEQRES 8 A 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR
SEQRES 9 A 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER
SEQRES 10 A 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA
SEQRES 11 A 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO
SEQRES 12 A 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET
SEQRES 13 A 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS
SEQRES 14 A 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU
SEQRES 15 A 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL
SEQRES 16 A 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO
SEQRES 17 A 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU
SEQRES 18 A 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE
SEQRES 19 A 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE
SEQRES 20 A 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG
SEQRES 21 A 263 THR ALA ARG
SEQRES 1 B 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU
SEQRES 2 B 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL
SEQRES 3 B 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL
SEQRES 4 B 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL
SEQRES 5 B 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP
SEQRES 6 B 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG
SEQRES 7 B 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER
SEQRES 8 B 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR
SEQRES 9 B 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER
SEQRES 10 B 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA
SEQRES 11 B 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO
SEQRES 12 B 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET
SEQRES 13 B 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS
SEQRES 14 B 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU
SEQRES 15 B 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL
SEQRES 16 B 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO
SEQRES 17 B 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU
SEQRES 18 B 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE
SEQRES 19 B 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE
SEQRES 20 B 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG
SEQRES 21 B 263 THR ALA ARG
HET COA A 301 48
HET SIS A 302 31
HET CL A 303 1
HET CL A 304 1
HET CL A 305 1
HET PEG A 306 7
HET COA B 301 48
HET SIS B 302 31
HET SO4 B 303 5
HET PEG B 304 7
HETNAM COA COENZYME A
HETNAM SIS (1S,2S,3R,4S,6R)-4,6-DIAMINO-3-{[(2S,3R)-3-AMINO-6-
HETNAM 2 SIS (AMINOMETHYL)-3,4-DIHYDRO-2H-PYRAN-2-YL]OXY}-2-
HETNAM 3 SIS HYDROXYCYCLOHEXYL 3-DEOXY-4-C-METHYL-3-(METHYLAMINO)-
HETNAM 4 SIS BETA-L-ARABINOPYRANOSIDE
HETNAM CL CHLORIDE ION
HETNAM PEG DI(HYDROXYETHYL)ETHER
HETNAM SO4 SULFATE ION
HETSYN SIS SISOMICIN
FORMUL 3 COA 2(C21 H36 N7 O16 P3 S)
FORMUL 4 SIS 2(C19 H37 N5 O7)
FORMUL 5 CL 3(CL 1-)
FORMUL 8 PEG 2(C4 H10 O3)
FORMUL 11 SO4 O4 S 2-
FORMUL 13 HOH *120(H2 O)
HELIX 1 AA1 THR A 7 GLY A 19 1 13
HELIX 2 AA2 LEU A 32 GLY A 36 5 5
HELIX 3 AA3 PRO A 42 GLY A 54 1 13
HELIX 4 AA4 GLU A 68 ASP A 74 1 7
HELIX 5 AA5 ALA A 76 ILE A 81 5 6
HELIX 6 AA6 ILE A 92 ASN A 95 5 4
HELIX 7 AA7 GLY A 96 THR A 104 1 9
HELIX 8 AA8 GLU A 124 ALA A 130 1 7
HELIX 9 AA9 SER A 142 ALA A 150 1 9
HELIX 10 AB1 PRO A 160 MET A 164 5 5
HELIX 11 AB2 THR A 165 ALA A 174 1 10
HELIX 12 AB3 ASP A 214 THR A 226 1 13
HELIX 13 AB4 ALA A 244 ARG A 260 1 17
HELIX 14 AB5 THR B 7 GLY B 19 1 13
HELIX 15 AB6 LEU B 32 GLY B 36 5 5
HELIX 16 AB7 PRO B 42 GLY B 54 1 13
HELIX 17 AB8 GLU B 68 ASP B 73 1 6
HELIX 18 AB9 ILE B 92 ASN B 95 5 4
HELIX 19 AC1 GLY B 96 THR B 104 1 9
HELIX 20 AC2 GLU B 124 ALA B 130 1 7
HELIX 21 AC3 SER B 142 ALA B 150 1 9
HELIX 22 AC4 PRO B 160 LEU B 166 5 7
HELIX 23 AC5 LEU B 167 ALA B 174 1 8
HELIX 24 AC6 ASP B 214 ALA B 225 1 12
HELIX 25 AC7 ALA B 244 THR B 261 1 18
SHEET 1 AA1 2 VAL A 5 SER A 6 0
SHEET 2 AA1 2 LYS A 37 ILE A 38 1 O LYS A 37 N SER A 6
SHEET 1 AA2 7 LEU A 109 ARG A 110 0
SHEET 2 AA2 7 MET A 118 GLY A 122 -1 O ALA A 120 N LEU A 109
SHEET 3 AA2 7 THR A 58 TYR A 62 -1 N GLY A 61 O ALA A 119
SHEET 4 AA2 7 ALA A 25 ALA A 30 1 N VAL A 26 O THR A 58
SHEET 5 AA2 7 LYS A 153 LEU A 157 1 O LEU A 157 N HIS A 29
SHEET 6 AA2 7 ALA A 237 PRO A 243 -1 O VAL A 242 N VAL A 154
SHEET 7 AA2 7 LYS A 230 ILE A 234 -1 N GLY A 232 O SER A 239
SHEET 1 AA3 2 ILE A 181 LEU A 182 0
SHEET 2 AA3 2 GLU A 201 PHE A 202 -1 O GLU A 201 N LEU A 182
SHEET 1 AA4 2 GLU A 185 VAL A 190 0
SHEET 2 AA4 2 GLU A 193 TRP A 198 -1 O VAL A 195 N ILE A 188
SHEET 1 AA5 7 LEU B 109 ARG B 110 0
SHEET 2 AA5 7 MET B 118 GLY B 122 -1 O ALA B 120 N LEU B 109
SHEET 3 AA5 7 THR B 58 TYR B 62 -1 N GLY B 61 O ALA B 119
SHEET 4 AA5 7 ALA B 25 ALA B 30 1 N VAL B 26 O LEU B 60
SHEET 5 AA5 7 LYS B 153 LEU B 157 1 O LYS B 153 N LEU B 27
SHEET 6 AA5 7 ALA B 237 PRO B 243 -1 O VAL B 240 N MET B 156
SHEET 7 AA5 7 LYS B 230 ILE B 234 -1 N ILE B 234 O ALA B 237
SHEET 1 AA6 2 ILE B 181 LEU B 189 0
SHEET 2 AA6 2 LYS B 194 PHE B 202 -1 O PHE B 199 N TYR B 184
LINK S1P COA A 301 N32 SIS A 302 1555 1555 1.62
LINK S1P COA B 301 N32 SIS B 302 1555 1555 1.62
SITE 1 AC1 1 ARG A 78
SITE 1 AC2 1 ARG A 8
SITE 1 AC3 2 TYR A 136 PHE A 202
SITE 1 AC4 2 ARG B 78 HOH B 407
SITE 1 AC5 1 TYR B 136
SITE 1 AC6 25 HIS A 29 ALA A 30 ALA A 31 LEU A 32
SITE 2 AC6 25 ARG A 33 PRO A 42 TYR A 62 ASP A 64
SITE 3 AC6 25 ASP A 69 ASN A 95 GLY A 96 PHE A 97
SITE 4 AC6 25 GLY A 115 TYR A 138 PRO A 160 ASP A 162
SITE 5 AC6 25 THR A 163 THR A 204 SER A 205 HOH A 411
SITE 6 AC6 25 HOH A 423 HOH A 424 HOH A 439 GLN B 66
SITE 7 AC6 25 ARG B 93
SITE 1 AC7 23 GLN A 66 ARG A 93 HIS B 29 ALA B 30
SITE 2 AC7 23 LEU B 32 ARG B 33 PRO B 42 TYR B 62
SITE 3 AC7 23 ASP B 64 ASP B 69 ASN B 95 GLY B 96
SITE 4 AC7 23 PHE B 97 GLY B 115 TYR B 138 PRO B 160
SITE 5 AC7 23 ASP B 162 THR B 163 THR B 165 THR B 204
SITE 6 AC7 23 SER B 205 HOH B 401 HOH B 409
CRYST1 127.755 127.755 95.114 90.00 90.00 120.00 P 31 2 1 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.007827 0.004519 0.000000 0.00000
SCALE2 0.000000 0.009038 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010514 0.00000