HEADER TRANSFERASE/ANTIBIOTIC 01-OCT-18 6MN2 TITLE CRYSTAL STRUCTURE OF META-AAC0038, AN ENVIRONMENTAL AMINOGLYCOSIDE TITLE 2 RESISTANCE ENZYME, MUTANT H168A IN ABORTIVE COMPLEX WITH SISOMICIN- TITLE 3 COA COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE N(3)-ACETYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.3.1.81; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNCULTURED BACTERIUM; SOURCE 3 ORGANISM_TAXID: 77133; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)-MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMCSG53 KEYWDS ANTIBIOTIC_NAT FAMILY, ACETYLTRANSFERASE, AMINOGLYCOSIDE, ANTIBIOTIC KEYWDS 2 RESISTANCE, METAGENOME, SOIL, COENZYME A, SISOMICIN, CSGID, KEYWDS 3 TRANSFERASE, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, KEYWDS 4 NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES, NIAID, KEYWDS 5 TRANSFERASE-ANTIBIOTIC COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,T.SKARINA,K.MICHALSKA,Z.XU,V.YIM,A.SAVCHENKO, AUTHOR 2 A.JOACHIMIAK,K.J.SATCHELL,CENTER FOR STRUCTURAL GENOMICS OF AUTHOR 3 INFECTIOUS DISEASES (CSGID) REVDAT 3 11-OCT-23 6MN2 1 REMARK REVDAT 2 18-DEC-19 6MN2 1 REMARK REVDAT 1 24-OCT-18 6MN2 0 JRNL AUTH P.J.STOGIOS JRNL TITL CRYSTAL STRUCTURE OF META-AAC0038, AN ENVIRONMENTAL JRNL TITL 2 AMINOGLYCOSIDE RESISTANCE ENZYME, MUTANT H168A IN ABORTIVE JRNL TITL 3 COMPLEX WITH SISOMICIN-COA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.14_3260: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 45290 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2267 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2052 - 6.8869 1.00 2693 149 0.1796 0.2003 REMARK 3 2 6.8869 - 5.4781 1.00 2673 146 0.1920 0.2033 REMARK 3 3 5.4781 - 4.7891 1.00 2713 143 0.1753 0.2257 REMARK 3 4 4.7891 - 4.3528 1.00 2709 137 0.1809 0.1978 REMARK 3 5 4.3528 - 4.0416 1.00 2699 144 0.1977 0.2325 REMARK 3 6 4.0416 - 3.8039 0.98 2640 131 0.2703 0.2734 REMARK 3 7 3.8039 - 3.6137 0.99 2669 145 0.2957 0.3029 REMARK 3 8 3.6137 - 3.4567 1.00 2672 134 0.2866 0.3186 REMARK 3 9 3.4567 - 3.3238 1.00 2702 144 0.2983 0.2701 REMARK 3 10 3.3238 - 3.2093 1.00 2715 138 0.2931 0.3320 REMARK 3 11 3.2093 - 3.1090 1.00 2676 142 0.3014 0.3195 REMARK 3 12 3.1090 - 3.0203 1.00 2729 150 0.3154 0.3210 REMARK 3 13 3.0203 - 2.9408 1.00 2657 138 0.3389 0.3512 REMARK 3 14 2.9408 - 2.8691 1.00 2679 144 0.3570 0.4022 REMARK 3 15 2.8691 - 2.8040 1.00 2723 142 0.3694 0.3697 REMARK 3 16 2.8040 - 2.7443 0.99 2674 140 0.3641 0.3831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.430 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 4267 REMARK 3 ANGLE : 1.086 5813 REMARK 3 CHIRALITY : 0.049 609 REMARK 3 PLANARITY : 0.006 745 REMARK 3 DIHEDRAL : 23.373 1597 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 211.8635 277.0982 -0.9842 REMARK 3 T TENSOR REMARK 3 T11: 0.1423 T22: 0.2915 REMARK 3 T33: 0.2237 T12: -0.0326 REMARK 3 T13: -0.0073 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 1.4025 L22: 6.0951 REMARK 3 L33: 4.1384 L12: -1.3527 REMARK 3 L13: 0.5660 L23: -0.0518 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: 0.0765 S13: 0.0703 REMARK 3 S21: -0.2384 S22: -0.0834 S23: -0.3062 REMARK 3 S31: 0.2391 S32: 0.0945 S33: 0.0589 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 181.9772 288.4829 2.2252 REMARK 3 T TENSOR REMARK 3 T11: 0.3235 T22: 0.5693 REMARK 3 T33: 0.4974 T12: 0.0893 REMARK 3 T13: 0.1067 T23: 0.1932 REMARK 3 L TENSOR REMARK 3 L11: 6.3821 L22: 0.9341 REMARK 3 L33: 4.4593 L12: -0.8408 REMARK 3 L13: 1.6089 L23: 0.9387 REMARK 3 S TENSOR REMARK 3 S11: -0.2336 S12: 0.5590 S13: 0.4202 REMARK 3 S21: 0.5644 S22: 0.3178 S23: -0.2041 REMARK 3 S31: -0.9704 S32: -1.2057 S33: -0.1358 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): 194.5652 276.9299 5.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.2182 T22: 0.2735 REMARK 3 T33: 0.2932 T12: 0.0175 REMARK 3 T13: 0.0345 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 3.2809 L22: 0.2989 REMARK 3 L33: 3.2530 L12: 0.8322 REMARK 3 L13: 0.0300 L23: 0.0814 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.2172 S13: -0.0592 REMARK 3 S21: 0.0974 S22: 0.1127 S23: 0.1491 REMARK 3 S31: -0.2145 S32: -0.3598 S33: -0.0832 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 262 ) REMARK 3 ORIGIN FOR THE GROUP (A): 196.5888 283.6986 16.8132 REMARK 3 T TENSOR REMARK 3 T11: 0.3278 T22: 0.3185 REMARK 3 T33: 0.3810 T12: -0.0268 REMARK 3 T13: 0.0562 T23: 0.0144 REMARK 3 L TENSOR REMARK 3 L11: 5.1329 L22: 0.6969 REMARK 3 L33: 2.9873 L12: 0.1984 REMARK 3 L13: 0.3146 L23: 0.5080 REMARK 3 S TENSOR REMARK 3 S11: 0.2203 S12: -0.7850 S13: 0.5088 REMARK 3 S21: 0.2199 S22: -0.0375 S23: 0.0196 REMARK 3 S31: -0.3106 S32: -0.1926 S33: -0.1732 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 181.4303 285.3245 -18.7513 REMARK 3 T TENSOR REMARK 3 T11: 0.2388 T22: 0.7487 REMARK 3 T33: 0.5178 T12: 0.0362 REMARK 3 T13: -0.0032 T23: 0.2009 REMARK 3 L TENSOR REMARK 3 L11: 1.6765 L22: 4.1770 REMARK 3 L33: 3.5018 L12: 0.8518 REMARK 3 L13: -0.4976 L23: 0.3606 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: 0.2984 S13: 0.2882 REMARK 3 S21: 0.0580 S22: -0.0954 S23: 0.6783 REMARK 3 S31: -0.1701 S32: -0.6811 S33: 0.1058 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 87 ) REMARK 3 ORIGIN FOR THE GROUP (A): 213.1911 279.1878 -19.6089 REMARK 3 T TENSOR REMARK 3 T11: 0.2958 T22: 0.3712 REMARK 3 T33: 0.3520 T12: -0.0096 REMARK 3 T13: 0.0324 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.4678 L22: 1.8540 REMARK 3 L33: 3.4822 L12: 1.2283 REMARK 3 L13: 0.6778 L23: -0.2347 REMARK 3 S TENSOR REMARK 3 S11: 0.0435 S12: 0.5140 S13: 0.4885 REMARK 3 S21: -0.0477 S22: 0.0906 S23: -0.1563 REMARK 3 S31: -0.1511 S32: 0.3371 S33: -0.1305 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 88 THROUGH 189 ) REMARK 3 ORIGIN FOR THE GROUP (A): 197.4164 279.4389 -28.5739 REMARK 3 T TENSOR REMARK 3 T11: 0.3434 T22: 0.6183 REMARK 3 T33: 0.3452 T12: -0.0598 REMARK 3 T13: -0.0051 T23: 0.1127 REMARK 3 L TENSOR REMARK 3 L11: 2.1406 L22: 1.4216 REMARK 3 L33: 3.3140 L12: -1.1414 REMARK 3 L13: -0.5490 L23: 0.1055 REMARK 3 S TENSOR REMARK 3 S11: 0.1944 S12: 0.8959 S13: 0.2569 REMARK 3 S21: -0.3628 S22: -0.1020 S23: -0.0281 REMARK 3 S31: -0.1257 S32: -0.4842 S33: -0.1155 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 190 THROUGH 215 ) REMARK 3 ORIGIN FOR THE GROUP (A): 208.6019 281.6903 -31.6443 REMARK 3 T TENSOR REMARK 3 T11: 0.4935 T22: 0.5135 REMARK 3 T33: 0.5997 T12: -0.0473 REMARK 3 T13: 0.2793 T23: 0.2733 REMARK 3 L TENSOR REMARK 3 L11: 2.5632 L22: 2.4317 REMARK 3 L33: 1.8300 L12: -0.2157 REMARK 3 L13: -0.0824 L23: -0.4490 REMARK 3 S TENSOR REMARK 3 S11: 0.1937 S12: 0.9079 S13: 0.5852 REMARK 3 S21: -0.4336 S22: 0.3855 S23: -0.1550 REMARK 3 S31: -0.0124 S32: -0.2653 S33: -0.3090 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 216 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 184.4080 294.9826 -33.4103 REMARK 3 T TENSOR REMARK 3 T11: 0.6219 T22: 1.0647 REMARK 3 T33: 0.7680 T12: 0.1667 REMARK 3 T13: 0.0526 T23: 0.4711 REMARK 3 L TENSOR REMARK 3 L11: 6.2397 L22: 1.8699 REMARK 3 L33: 2.5804 L12: -1.4298 REMARK 3 L13: -3.2394 L23: 1.9269 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.4697 S13: 0.1388 REMARK 3 S21: -0.2524 S22: -0.4757 S23: -0.0961 REMARK 3 S31: -0.7552 S32: -0.1878 S33: 0.3684 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 237 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 191.0655 289.8392 -41.6935 REMARK 3 T TENSOR REMARK 3 T11: 0.7241 T22: 1.5537 REMARK 3 T33: 0.5570 T12: 0.1540 REMARK 3 T13: -0.0034 T23: 0.4382 REMARK 3 L TENSOR REMARK 3 L11: 1.5303 L22: 2.7994 REMARK 3 L33: 0.0198 L12: -0.7786 REMARK 3 L13: -0.0001 L23: 0.1737 REMARK 3 S TENSOR REMARK 3 S11: 0.2494 S12: 1.4989 S13: 0.7335 REMARK 3 S21: -0.6944 S22: 0.1405 S23: -0.1488 REMARK 3 S31: -0.2031 S32: -0.5827 S33: 0.1457 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MN2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000235556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97919 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.90 REMARK 200 R MERGE (I) : 0.28900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 2.20900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5HT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 30% PEG 8K, 10 MM SISOMICIN, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.70467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 63.40933 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 63.40933 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 31.70467 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 ARG A 263 REMARK 465 VAL B 1 REMARK 465 SER B 2 REMARK 465 ALA B 262 REMARK 465 ARG B 263 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 64 -155.97 62.26 REMARK 500 ARG A 141 59.69 -99.38 REMARK 500 MET A 164 91.89 -64.56 REMARK 500 ASP B 64 -154.77 59.59 REMARK 500 ARG B 141 56.37 -97.68 REMARK 500 ASP B 162 1.63 -66.20 REMARK 500 MET B 164 88.65 -66.93 REMARK 500 ASP B 214 30.06 -86.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 479 DISTANCE = 6.00 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues COA A 301 and SIS A REMARK 800 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues COA B 301 and SIS B REMARK 800 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TH0 RELATED DB: PDB REMARK 900 RELATED ID: IDP95436 RELATED DB: TARGETTRACK DBREF1 6MN2 A 2 263 UNP A0A059X981_9BACT DBREF2 6MN2 A A0A059X981 2 263 DBREF1 6MN2 B 2 263 UNP A0A059X981_9BACT DBREF2 6MN2 B A0A059X981 2 263 SEQADV 6MN2 VAL A 1 UNP A0A059X98 EXPRESSION TAG SEQADV 6MN2 ALA A 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION SEQADV 6MN2 VAL B 1 UNP A0A059X98 EXPRESSION TAG SEQADV 6MN2 ALA B 168 UNP A0A059X98 HIS 168 ENGINEERED MUTATION SEQRES 1 A 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU SEQRES 2 A 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL SEQRES 3 A 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL SEQRES 4 A 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL SEQRES 5 A 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP SEQRES 6 A 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG SEQRES 7 A 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER SEQRES 8 A 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR SEQRES 9 A 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER SEQRES 10 A 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA SEQRES 11 A 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO SEQRES 12 A 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET SEQRES 13 A 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS SEQRES 14 A 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU SEQRES 15 A 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL SEQRES 16 A 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO SEQRES 17 A 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU SEQRES 18 A 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE SEQRES 19 A 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE SEQRES 20 A 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG SEQRES 21 A 263 THR ALA ARG SEQRES 1 B 263 VAL SER SER ARG VAL SER THR ARG SER SER LEU ALA GLU SEQRES 2 B 263 ASP LEU ARG ALA ILE GLY LEU ALA ASP GLY ASP ALA VAL SEQRES 3 B 263 LEU VAL HIS ALA ALA LEU ARG LYS VAL GLY LYS ILE VAL SEQRES 4 B 263 GLY GLY PRO ASP ASP ILE LEU ASP ALA MET ARG ASP VAL SEQRES 5 B 263 ILE GLY PRO ALA GLY THR VAL LEU GLY TYR ALA ASP TRP SEQRES 6 B 263 GLN LEU GLU ASP GLU ILE ARG ASP ASP PRO ALA MET ARG SEQRES 7 B 263 GLU HIS ILE PRO ALA PHE ASP PRO LEU ARG SER ARG SER SEQRES 8 B 263 ILE ARG ASP ASN GLY PHE TRP PRO GLU LEU ILE ARG THR SEQRES 9 B 263 THR PRO GLY ALA LEU ARG SER ALA SER PRO GLY ALA SER SEQRES 10 B 263 MET ALA ALA ILE GLY GLY GLU ALA GLU TRP PHE THR ALA SEQRES 11 B 263 ASP HIS ALA LEU ASP TYR GLY TYR GLY PRO ARG SER PRO SEQRES 12 B 263 LEU GLY LYS LEU VAL GLU ALA LYS GLY LYS VAL LEU MET SEQRES 13 B 263 LEU GLY ALA PRO LEU ASP THR MET THR LEU LEU ALA HIS SEQRES 14 B 263 ALA GLU HIS LEU ALA ASP PHE PRO ASN LYS ARG ILE LEU SEQRES 15 B 263 ARG TYR GLU ALA PRO ILE LEU VAL ASP GLY GLU LYS VAL SEQRES 16 B 263 TRP ARG TRP PHE GLU GLU PHE ASP THR SER ASP PRO PRO SEQRES 17 B 263 ASP GLY LEU ALA ASP ASP TYR PHE ALA GLY ILE VAL GLU SEQRES 18 B 263 GLU PHE LEU ALA THR GLY ARG GLY LYS ARG GLY LYS ILE SEQRES 19 B 263 GLY GLU ALA SER SER VAL LEU VAL PRO ALA ASP GLU ILE SEQRES 20 B 263 VAL ALA PHE ALA VAL ASP TRP LEU GLU ARG TRP GLY ARG SEQRES 21 B 263 THR ALA ARG HET COA A 301 48 HET SIS A 302 31 HET CL A 303 1 HET CL A 304 1 HET CL A 305 1 HET PEG A 306 7 HET COA B 301 48 HET SIS B 302 31 HET SO4 B 303 5 HET PEG B 304 7 HETNAM COA COENZYME A HETNAM SIS (1S,2S,3R,4S,6R)-4,6-DIAMINO-3-{[(2S,3R)-3-AMINO-6- HETNAM 2 SIS (AMINOMETHYL)-3,4-DIHYDRO-2H-PYRAN-2-YL]OXY}-2- HETNAM 3 SIS HYDROXYCYCLOHEXYL 3-DEOXY-4-C-METHYL-3-(METHYLAMINO)- HETNAM 4 SIS BETA-L-ARABINOPYRANOSIDE HETNAM CL CHLORIDE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETSYN SIS SISOMICIN FORMUL 3 COA 2(C21 H36 N7 O16 P3 S) FORMUL 4 SIS 2(C19 H37 N5 O7) FORMUL 5 CL 3(CL 1-) FORMUL 8 PEG 2(C4 H10 O3) FORMUL 11 SO4 O4 S 2- FORMUL 13 HOH *120(H2 O) HELIX 1 AA1 THR A 7 GLY A 19 1 13 HELIX 2 AA2 LEU A 32 GLY A 36 5 5 HELIX 3 AA3 PRO A 42 GLY A 54 1 13 HELIX 4 AA4 GLU A 68 ASP A 74 1 7 HELIX 5 AA5 ALA A 76 ILE A 81 5 6 HELIX 6 AA6 ILE A 92 ASN A 95 5 4 HELIX 7 AA7 GLY A 96 THR A 104 1 9 HELIX 8 AA8 GLU A 124 ALA A 130 1 7 HELIX 9 AA9 SER A 142 ALA A 150 1 9 HELIX 10 AB1 PRO A 160 MET A 164 5 5 HELIX 11 AB2 THR A 165 ALA A 174 1 10 HELIX 12 AB3 ASP A 214 THR A 226 1 13 HELIX 13 AB4 ALA A 244 ARG A 260 1 17 HELIX 14 AB5 THR B 7 GLY B 19 1 13 HELIX 15 AB6 LEU B 32 GLY B 36 5 5 HELIX 16 AB7 PRO B 42 GLY B 54 1 13 HELIX 17 AB8 GLU B 68 ASP B 73 1 6 HELIX 18 AB9 ILE B 92 ASN B 95 5 4 HELIX 19 AC1 GLY B 96 THR B 104 1 9 HELIX 20 AC2 GLU B 124 ALA B 130 1 7 HELIX 21 AC3 SER B 142 ALA B 150 1 9 HELIX 22 AC4 PRO B 160 LEU B 166 5 7 HELIX 23 AC5 LEU B 167 ALA B 174 1 8 HELIX 24 AC6 ASP B 214 ALA B 225 1 12 HELIX 25 AC7 ALA B 244 THR B 261 1 18 SHEET 1 AA1 2 VAL A 5 SER A 6 0 SHEET 2 AA1 2 LYS A 37 ILE A 38 1 O LYS A 37 N SER A 6 SHEET 1 AA2 7 LEU A 109 ARG A 110 0 SHEET 2 AA2 7 MET A 118 GLY A 122 -1 O ALA A 120 N LEU A 109 SHEET 3 AA2 7 THR A 58 TYR A 62 -1 N GLY A 61 O ALA A 119 SHEET 4 AA2 7 ALA A 25 ALA A 30 1 N VAL A 26 O THR A 58 SHEET 5 AA2 7 LYS A 153 LEU A 157 1 O LEU A 157 N HIS A 29 SHEET 6 AA2 7 ALA A 237 PRO A 243 -1 O VAL A 242 N VAL A 154 SHEET 7 AA2 7 LYS A 230 ILE A 234 -1 N GLY A 232 O SER A 239 SHEET 1 AA3 2 ILE A 181 LEU A 182 0 SHEET 2 AA3 2 GLU A 201 PHE A 202 -1 O GLU A 201 N LEU A 182 SHEET 1 AA4 2 GLU A 185 VAL A 190 0 SHEET 2 AA4 2 GLU A 193 TRP A 198 -1 O VAL A 195 N ILE A 188 SHEET 1 AA5 7 LEU B 109 ARG B 110 0 SHEET 2 AA5 7 MET B 118 GLY B 122 -1 O ALA B 120 N LEU B 109 SHEET 3 AA5 7 THR B 58 TYR B 62 -1 N GLY B 61 O ALA B 119 SHEET 4 AA5 7 ALA B 25 ALA B 30 1 N VAL B 26 O LEU B 60 SHEET 5 AA5 7 LYS B 153 LEU B 157 1 O LYS B 153 N LEU B 27 SHEET 6 AA5 7 ALA B 237 PRO B 243 -1 O VAL B 240 N MET B 156 SHEET 7 AA5 7 LYS B 230 ILE B 234 -1 N ILE B 234 O ALA B 237 SHEET 1 AA6 2 ILE B 181 LEU B 189 0 SHEET 2 AA6 2 LYS B 194 PHE B 202 -1 O PHE B 199 N TYR B 184 LINK S1P COA A 301 N32 SIS A 302 1555 1555 1.62 LINK S1P COA B 301 N32 SIS B 302 1555 1555 1.62 SITE 1 AC1 1 ARG A 78 SITE 1 AC2 1 ARG A 8 SITE 1 AC3 2 TYR A 136 PHE A 202 SITE 1 AC4 2 ARG B 78 HOH B 407 SITE 1 AC5 1 TYR B 136 SITE 1 AC6 25 HIS A 29 ALA A 30 ALA A 31 LEU A 32 SITE 2 AC6 25 ARG A 33 PRO A 42 TYR A 62 ASP A 64 SITE 3 AC6 25 ASP A 69 ASN A 95 GLY A 96 PHE A 97 SITE 4 AC6 25 GLY A 115 TYR A 138 PRO A 160 ASP A 162 SITE 5 AC6 25 THR A 163 THR A 204 SER A 205 HOH A 411 SITE 6 AC6 25 HOH A 423 HOH A 424 HOH A 439 GLN B 66 SITE 7 AC6 25 ARG B 93 SITE 1 AC7 23 GLN A 66 ARG A 93 HIS B 29 ALA B 30 SITE 2 AC7 23 LEU B 32 ARG B 33 PRO B 42 TYR B 62 SITE 3 AC7 23 ASP B 64 ASP B 69 ASN B 95 GLY B 96 SITE 4 AC7 23 PHE B 97 GLY B 115 TYR B 138 PRO B 160 SITE 5 AC7 23 ASP B 162 THR B 163 THR B 165 THR B 204 SITE 6 AC7 23 SER B 205 HOH B 401 HOH B 409 CRYST1 127.755 127.755 95.114 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007827 0.004519 0.000000 0.00000 SCALE2 0.000000 0.009038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010514 0.00000