HEADER IMMUNE SYSTEM 02-OCT-18 6MNO TITLE 6235 TCR BOUND TO I-AB PADI4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN, A-B ALPHA CHAIN; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: IAALPHA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PADI4 (92-105) PEPTIDE AND MHC CLASS II I-AB BETA CHAIN; COMPND 8 CHAIN: D; COMPND 9 EC: 3.5.3.15; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: 6235 TCR ALPHA CHAIN; COMPND 13 CHAIN: A; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: 6235 TCR BETA CHAIN; COMPND 17 CHAIN: B; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: H2-AA; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 GENE: PADI4, PAD4, PDI4, H2-AB1, H2-IABETA; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 17 ORGANISM_COMMON: MOUSE; SOURCE 18 ORGANISM_TAXID: 10090; SOURCE 19 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 20 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 21 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 22 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 23 EXPRESSION_SYSTEM_PLASMID: PET30; SOURCE 24 MOL_ID: 4; SOURCE 25 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 26 ORGANISM_COMMON: MOUSE; SOURCE 27 ORGANISM_TAXID: 10090; SOURCE 28 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 29 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 30 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 31 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 32 EXPRESSION_SYSTEM_PLASMID: PET30 KEYWDS T CELL RECEPTOR, MAJOR HISTOCOMPATIBILITY COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.D.STADINSKI,S.J.BLEVINS,E.S.HUSEBY REVDAT 3 11-OCT-23 6MNO 1 REMARK REVDAT 2 31-JUL-19 6MNO 1 JRNL REVDAT 1 03-JUL-19 6MNO 0 JRNL AUTH B.D.STADINSKI,S.J.BLEVINS,N.A.SPIDALE,B.R.DUKE,P.G.HUSEBY, JRNL AUTH 2 L.J.STERN,E.S.HUSEBY JRNL TITL A TEMPORAL THYMIC SELECTION SWITCH AND LIGAND BINDING JRNL TITL 2 KINETICS CONSTRAIN NEONATAL FOXP3+TREGCELL DEVELOPMENT. JRNL REF NAT.IMMUNOL. V. 20 1046 2019 JRNL REFN ESSN 1529-2916 JRNL PMID 31209405 JRNL DOI 10.1038/S41590-019-0414-1 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24687 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.040 REMARK 3 FREE R VALUE TEST SET COUNT : 1984 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.6701 - 6.9614 1.00 1690 142 0.2042 0.2680 REMARK 3 2 6.9614 - 5.5372 1.00 1648 143 0.2252 0.2618 REMARK 3 3 5.5372 - 4.8407 1.00 1632 146 0.1775 0.2363 REMARK 3 4 4.8407 - 4.3997 1.00 1620 138 0.1625 0.2040 REMARK 3 5 4.3997 - 4.0852 1.00 1605 143 0.1885 0.2257 REMARK 3 6 4.0852 - 3.8448 1.00 1621 141 0.2024 0.2411 REMARK 3 7 3.8448 - 3.6526 1.00 1626 138 0.2160 0.2883 REMARK 3 8 3.6526 - 3.4939 1.00 1582 142 0.2273 0.2456 REMARK 3 9 3.4939 - 3.3596 1.00 1642 141 0.2583 0.3064 REMARK 3 10 3.3596 - 3.2438 1.00 1574 146 0.2595 0.3395 REMARK 3 11 3.2438 - 3.1425 1.00 1617 146 0.2664 0.3490 REMARK 3 12 3.1425 - 3.0528 1.00 1602 132 0.2762 0.3704 REMARK 3 13 3.0528 - 2.9725 1.00 1627 138 0.2731 0.3819 REMARK 3 14 2.9725 - 2.9000 1.00 1617 148 0.2774 0.3920 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.700 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6309 REMARK 3 ANGLE : 0.890 8640 REMARK 3 CHIRALITY : 0.055 956 REMARK 3 PLANARITY : 0.005 1122 REMARK 3 DIHEDRAL : 11.905 3660 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MNO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237268. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97936 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24697 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 29.670 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.72700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 4000, 100MM NACACODYLATE, 100 REMARK 280 MM NACITRATE, PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 125.02850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.51500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 125.02850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.51500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU C 122 REMARK 465 ARG C 123 REMARK 465 ASP C 158 REMARK 465 ASP C 159 REMARK 465 ILE C 160 REMARK 465 GLY D -12 REMARK 465 GLY D -11 REMARK 465 GLY D -10 REMARK 465 GLY D -9 REMARK 465 SER D -8 REMARK 465 LEU D -7 REMARK 465 VAL D -6 REMARK 465 PRO D -5 REMARK 465 ARG D -4 REMARK 465 GLY D -3 REMARK 465 SER D -2 REMARK 465 GLY D -1 REMARK 465 GLY D 0 REMARK 465 GLY D 1 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 ARG D 106 REMARK 465 THR D 107 REMARK 465 GLU D 108 REMARK 465 ALA D 109 REMARK 465 LEU D 110 REMARK 465 ASN D 111 REMARK 465 HIS D 112 REMARK 465 HIS D 113 REMARK 465 MET A 1 REMARK 465 LYS A 130 REMARK 465 SER A 131 REMARK 465 SER A 132 REMARK 465 LYS A 182 REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 SER A 204 REMARK 465 PRO A 205 REMARK 465 GLU A 206 REMARK 465 SER A 207 REMARK 465 SER A 208 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU C 1 CG CD OE1 OE2 REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 LYS C 75 CG CD CE NZ REMARK 470 GLN C 88 CG CD OE1 NE2 REMARK 470 THR C 90 OG1 CG2 REMARK 470 VAL C 97 CG1 CG2 REMARK 470 LEU C 99 CG CD1 CD2 REMARK 470 GLN C 101 CG CD OE1 NE2 REMARK 470 ASN C 124 CG OD1 ND2 REMARK 470 LYS C 126 CG CD CE NZ REMARK 470 ASP C 130 CG OD1 OD2 REMARK 470 ARG C 141 CG CD NE CZ NH1 NH2 REMARK 470 ILE C 154 CG1 CG2 CD1 REMARK 470 SER C 156 OG REMARK 470 ASP C 157 CG OD1 OD2 REMARK 470 LYS C 164 CG CD CE NZ REMARK 470 GLU C 166 CG CD OE1 OE2 REMARK 470 GLU C 171 CG CD OE1 OE2 REMARK 470 GLU C 172 CG CD OE1 OE2 REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 ARG D -26 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 4 CG CD OE1 OE2 REMARK 470 ARG D 5 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 22 CG CD OE1 NE2 REMARK 470 ARG D 23 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 35 CG CD OE1 OE2 REMARK 470 GLU D 52 CG CD OE1 OE2 REMARK 470 ASN D 114 CG OD1 ND2 REMARK 470 LYS D 129 CG CD CE NZ REMARK 470 GLN D 137 CG CD OE1 NE2 REMARK 470 GLU D 139 CG CD OE1 OE2 REMARK 470 ARG D 167 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 168 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 177 CG CD OE1 OE2 REMARK 470 SER D 183 OG REMARK 470 GLN A 2 CG CD OE1 NE2 REMARK 470 ARG A 5 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 69 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 118 CG OD1 ND2 REMARK 470 ARG A 127 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 128 CG OD1 OD2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 134 CG CD CE NZ REMARK 470 SER A 135 OG REMARK 470 GLN A 145 CG CD OE1 NE2 REMARK 470 LYS A 152 CG CD CE NZ REMARK 470 SER A 154 OG REMARK 470 LYS A 161 CG CD CE NZ REMARK 470 MET A 166 CG SD CE REMARK 470 ARG A 167 CG CD NE CZ NH1 NH2 REMARK 470 SER A 173 OG REMARK 470 ASN A 174 CG OD1 ND2 REMARK 470 ASN A 192 CG OD1 ND2 REMARK 470 ILE A 195 CG1 CG2 CD1 REMARK 470 GLU A 198 CG CD OE1 OE2 REMARK 470 ASN B 26 CG OD1 ND2 REMARK 470 LYS B 55 CG CD CE NZ REMARK 470 LYS B 63 CG CD CE NZ REMARK 470 GLU B 70 CG CD OE1 OE2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 114 CG CD CE NZ REMARK 470 GLU B 120 CG CD OE1 OE2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 LYS B 160 CG CD CE NZ REMARK 470 LYS B 174 CG CD CE NZ REMARK 470 GLN B 176 CG CD OE1 NE2 REMARK 470 ASN B 180 CG OD1 ND2 REMARK 470 ASP B 181 CG OD1 OD2 REMARK 470 SER B 182 OG REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 215 CG CD OE1 OE2 REMARK 470 ASN B 216 CG OD1 ND2 REMARK 470 ASP B 217 CG OD1 OD2 REMARK 470 GLU B 218 CG CD OE1 OE2 REMARK 470 ASP B 222 CG OD1 OD2 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 ARG B 238 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU B 130 OG1 THR B 134 2.12 REMARK 500 O LEU C 70 OG1 THR C 74 2.16 REMARK 500 O THR A 99 OH TYR B 48 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 17 NH1 ARG B 205 4745 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 113 120.94 -173.68 REMARK 500 ASP C 130 -89.13 -111.98 REMARK 500 ARG D 34 -16.48 74.49 REMARK 500 LEU D 53 -3.15 -57.04 REMARK 500 GLN D 64 96.73 -59.66 REMARK 500 VAL D 78 -56.98 -128.16 REMARK 500 GLU D 84 5.77 -64.75 REMARK 500 THR D 90 -79.95 -134.48 REMARK 500 PRO D 125 -160.77 -78.27 REMARK 500 LYS D 182 -73.32 -39.17 REMARK 500 LEU A 47 -63.63 -93.92 REMARK 500 SER A 80 106.30 -53.57 REMARK 500 ASP A 155 9.53 56.74 REMARK 500 ASP A 160 21.46 -154.89 REMARK 500 PHE A 171 53.61 -152.66 REMARK 500 SER A 173 -159.86 -139.08 REMARK 500 ASN A 174 84.51 -163.37 REMARK 500 SER A 180 -175.74 -173.56 REMARK 500 ASP A 199 33.93 -84.85 REMARK 500 ILE B 44 -63.06 -105.81 REMARK 500 ARG B 66 79.14 -118.09 REMARK 500 SER B 85 -172.12 178.98 REMARK 500 ASP B 149 37.16 -75.67 REMARK 500 PRO B 177 -6.87 -58.89 REMARK 500 THR B 220 41.08 -108.50 REMARK 500 PRO B 226 71.94 -67.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MNO C 0 178 UNP P14434 HA2B_MOUSE 27 205 DBREF 6MNO D -26 -14 UNP Q9Z183 PADI4_MOUSE 93 105 DBREF 6MNO D 4 191 UNP P14483 HB2A_MOUSE 31 218 DBREF 6MNO A 1 208 PDB 6MNO 6MNO 1 208 DBREF 6MNO B 1 239 PDB 6MNO 6MNO 1 239 SEQADV 6MNO GLY D -12 UNP Q9Z183 LINKER SEQADV 6MNO GLY D -11 UNP Q9Z183 LINKER SEQADV 6MNO GLY D -10 UNP Q9Z183 LINKER SEQADV 6MNO GLY D -9 UNP Q9Z183 LINKER SEQADV 6MNO SER D -8 UNP Q9Z183 LINKER SEQADV 6MNO LEU D -7 UNP Q9Z183 LINKER SEQADV 6MNO VAL D -6 UNP Q9Z183 LINKER SEQADV 6MNO PRO D -5 UNP Q9Z183 LINKER SEQADV 6MNO ARG D -4 UNP Q9Z183 LINKER SEQADV 6MNO GLY D -3 UNP Q9Z183 LINKER SEQADV 6MNO SER D -2 UNP Q9Z183 LINKER SEQADV 6MNO GLY D -1 UNP Q9Z183 LINKER SEQADV 6MNO GLY D 0 UNP Q9Z183 LINKER SEQADV 6MNO GLY D 1 UNP Q9Z183 LINKER SEQADV 6MNO GLY D 2 UNP Q9Z183 LINKER SEQADV 6MNO SER D 3 UNP Q9Z183 LINKER SEQRES 1 C 179 ILE GLU ALA ASP HIS VAL GLY THR TYR GLY ILE SER VAL SEQRES 2 C 179 TYR GLN SER PRO GLY ASP ILE GLY GLN TYR THR PHE GLU SEQRES 3 C 179 PHE ASP GLY ASP GLU LEU PHE TYR VAL ASP LEU ASP LYS SEQRES 4 C 179 LYS GLU THR VAL TRP MET LEU PRO GLU PHE GLY GLN LEU SEQRES 5 C 179 ALA SER PHE ASP PRO GLN GLY GLY LEU GLN ASN ILE ALA SEQRES 6 C 179 VAL VAL LYS HIS ASN LEU GLY VAL LEU THR LYS ARG SER SEQRES 7 C 179 ASN SER THR PRO ALA THR ASN GLU ALA PRO GLN ALA THR SEQRES 8 C 179 VAL PHE PRO LYS SER PRO VAL LEU LEU GLY GLN PRO ASN SEQRES 9 C 179 THR LEU ILE CYS PHE VAL ASP ASN ILE PHE PRO PRO VAL SEQRES 10 C 179 ILE ASN ILE THR TRP LEU ARG ASN SER LYS SER VAL ALA SEQRES 11 C 179 ASP GLY VAL TYR GLU THR SER PHE PHE VAL ASN ARG ASP SEQRES 12 C 179 TYR SER PHE HIS LYS LEU SER TYR LEU THR PHE ILE PRO SEQRES 13 C 179 SER ASP ASP ASP ILE TYR ASP CYS LYS VAL GLU HIS TRP SEQRES 14 C 179 GLY LEU GLU GLU PRO VAL LEU LYS HIS TRP SEQRES 1 D 217 ARG VAL SER TYR TYR GLY PRO LYS THR SER PRO VAL GLN SEQRES 2 D 217 GLY GLY GLY GLY SER LEU VAL PRO ARG GLY SER GLY GLY SEQRES 3 D 217 GLY GLY SER GLU ARG HIS PHE VAL TYR GLN PHE MET GLY SEQRES 4 D 217 GLU CYS TYR PHE THR ASN GLY THR GLN ARG ILE ARG TYR SEQRES 5 D 217 VAL THR ARG TYR ILE TYR ASN ARG GLU GLU TYR VAL ARG SEQRES 6 D 217 TYR ASP SER ASP VAL GLY GLU HIS ARG ALA VAL THR GLU SEQRES 7 D 217 LEU GLY ARG PRO ASP ALA GLU TYR TRP ASN SER GLN PRO SEQRES 8 D 217 GLU ILE LEU GLU ARG THR ARG ALA GLU LEU ASP THR VAL SEQRES 9 D 217 CYS ARG HIS ASN TYR GLU GLY PRO GLU THR HIS THR SER SEQRES 10 D 217 LEU ARG ARG LEU GLU GLN PRO ASN VAL VAL ILE SER LEU SEQRES 11 D 217 SER ARG THR GLU ALA LEU ASN HIS HIS ASN THR LEU VAL SEQRES 12 D 217 CYS SER VAL THR ASP PHE TYR PRO ALA LYS ILE LYS VAL SEQRES 13 D 217 ARG TRP PHE ARG ASN GLY GLN GLU GLU THR VAL GLY VAL SEQRES 14 D 217 SER SER THR GLN LEU ILE ARG ASN GLY ASP TRP THR PHE SEQRES 15 D 217 GLN VAL LEU VAL MET LEU GLU MET THR PRO ARG ARG GLY SEQRES 16 D 217 GLU VAL TYR THR CYS HIS VAL GLU HIS PRO SER LEU LYS SEQRES 17 D 217 SER PRO ILE THR VAL GLU TRP ARG ALA SEQRES 1 A 208 MET GLN GLN VAL ARG GLN SER PRO GLN SER LEU THR VAL SEQRES 2 A 208 TRP GLU GLY GLU THR ALA ILE LEU ASN CYS SER TYR GLU SEQRES 3 A 208 ASN SER ALA PHE ASP TYR PHE PRO TRP TYR GLN GLN PHE SEQRES 4 A 208 PRO GLY GLU GLY PRO ALA LEU LEU ILE ALA ILE ARG SER SEQRES 5 A 208 VAL SER ASP LYS LYS GLU ASP GLY ARG PHE THR ILE PHE SEQRES 6 A 208 PHE ASN LYS ARG GLU LYS LYS LEU SER LEU HIS ILE THR SEQRES 7 A 208 ASP SER GLN PRO GLY ASP SER ALA THR TYR PHE CYS ALA SEQRES 8 A 208 ALA SER GLU THR GLY ALA ASN THR GLY LYS LEU THR PHE SEQRES 9 A 208 GLY HIS GLY THR ILE LEU ARG VAL HIS PRO ASN ILE GLN SEQRES 10 A 208 ASN PRO ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SEQRES 11 A 208 SER SER ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SEQRES 12 A 208 SER GLN THR ASN VAL SER GLN SER LYS ASP SER ASP VAL SEQRES 13 A 208 TYR ILE THR ASP LYS CYS VAL LEU ASP MET ARG SER MET SEQRES 14 A 208 ASP PHE LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SEQRES 15 A 208 SER ASP PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE SEQRES 16 A 208 ILE PRO GLU ASP THR PHE PHE PRO SER PRO GLU SER SER SEQRES 1 B 239 ALA VAL THR GLN SER PRO ARG ASN LYS VAL ALA VAL THR SEQRES 2 B 239 GLY GLY LYS VAL THR LEU SER CYS ASN GLN THR ASN ASN SEQRES 3 B 239 HIS ASN ASN MET TYR TRP TYR ARG GLN ASP THR GLY HIS SEQRES 4 B 239 GLY LEU ARG LEU ILE HIS TYR SER TYR GLY ALA GLY SER SEQRES 5 B 239 THR GLU LYS GLY ASP ILE PRO ASP GLY TYR LYS ALA SER SEQRES 6 B 239 ARG PRO SER GLN GLU ASN PHE SER LEU ILE LEU GLU LEU SEQRES 7 B 239 ALA THR PRO SER GLN THR SER VAL TYR PHE CYS ALA SER SEQRES 8 B 239 GLY ASP PHE TRP GLY ASP THR LEU TYR PHE GLY ALA GLY SEQRES 9 B 239 THR ARG LEU SER VAL LEU GLU ASP LEU LYS ASN VAL PHE SEQRES 10 B 239 PRO PRO GLU VAL ALA VAL PHE GLU PRO SER GLU ALA GLU SEQRES 11 B 239 ILE SER HIS THR GLN LYS ALA THR LEU VAL CYS LEU ALA SEQRES 12 B 239 THR GLY PHE TYR PRO ASP HIS VAL GLU LEU SER TRP TRP SEQRES 13 B 239 VAL ASN GLY LYS GLU VAL HIS SER GLY VAL CYS THR ASP SEQRES 14 B 239 PRO GLN PRO LEU LYS GLU GLN PRO ALA LEU ASN ASP SER SEQRES 15 B 239 ARG TYR ALA LEU SER SER ARG LEU ARG VAL SER ALA THR SEQRES 16 B 239 PHE TRP GLN ASN PRO ARG ASN HIS PHE ARG CYS GLN VAL SEQRES 17 B 239 GLN PHE TYR GLY LEU SER GLU ASN ASP GLU TRP THR GLN SEQRES 18 B 239 ASP ARG ALA LYS PRO VAL THR GLN ILE VAL SER ALA GLU SEQRES 19 B 239 ALA TRP GLY ARG ALA HELIX 1 AA1 ASP C 55 SER C 77 1 23 HELIX 2 AA2 THR D 51 LEU D 53 5 3 HELIX 3 AA3 GLY D 54 GLN D 64 1 11 HELIX 4 AA4 GLN D 64 VAL D 78 1 15 HELIX 5 AA5 VAL D 78 GLU D 84 1 7 HELIX 6 AA6 GLY D 85 THR D 90 1 6 HELIX 7 AA7 SER D 91 ARG D 94 5 4 HELIX 8 AA8 GLN A 81 SER A 85 5 5 HELIX 9 AA9 GLU A 94 ASN A 98 5 5 HELIX 10 AB1 THR B 80 THR B 84 5 5 HELIX 11 AB2 ASP B 112 VAL B 116 5 5 HELIX 12 AB3 SER B 127 GLN B 135 1 9 HELIX 13 AB4 ALA B 194 GLN B 198 1 5 SHEET 1 AA1 8 GLU C 40 TRP C 43 0 SHEET 2 AA1 8 ASP C 29 ASP C 35 -1 N ASP C 35 O GLU C 40 SHEET 3 AA1 8 ILE C 19 PHE C 26 -1 N PHE C 26 O ASP C 29 SHEET 4 AA1 8 HIS C 4 SER C 15 -1 N ILE C 10 O THR C 23 SHEET 5 AA1 8 PHE D 7 THR D 18 -1 O TYR D 9 N TYR C 13 SHEET 6 AA1 8 ARG D 23 TYR D 32 -1 O VAL D 27 N GLU D 14 SHEET 7 AA1 8 GLU D 35 ASP D 41 -1 O VAL D 38 N TYR D 30 SHEET 8 AA1 8 HIS D 47 ALA D 49 -1 O ARG D 48 N ARG D 39 SHEET 1 AA2 4 VAL C 91 PRO C 93 0 SHEET 2 AA2 4 ASN C 103 ILE C 112 -1 O ILE C 106 N PHE C 92 SHEET 3 AA2 4 PHE C 145 PHE C 153 -1 O PHE C 145 N ILE C 112 SHEET 4 AA2 4 GLY C 131 GLU C 134 -1 N TYR C 133 O TYR C 150 SHEET 1 AA3 4 VAL C 91 PRO C 93 0 SHEET 2 AA3 4 ASN C 103 ILE C 112 -1 O ILE C 106 N PHE C 92 SHEET 3 AA3 4 PHE C 145 PHE C 153 -1 O PHE C 145 N ILE C 112 SHEET 4 AA3 4 PHE C 138 VAL C 139 -1 N PHE C 138 O HIS C 146 SHEET 1 AA4 3 ASN C 118 THR C 120 0 SHEET 2 AA4 3 ASP C 162 GLU C 166 -1 O GLU C 166 N ASN C 118 SHEET 3 AA4 3 VAL C 174 HIS C 177 -1 O VAL C 174 N VAL C 165 SHEET 1 AA5 4 ASN D 99 LEU D 104 0 SHEET 2 AA5 4 THR D 115 PHE D 123 -1 O VAL D 117 N SER D 103 SHEET 3 AA5 4 PHE D 156 GLU D 163 -1 O VAL D 158 N VAL D 120 SHEET 4 AA5 4 VAL D 143 SER D 145 -1 N SER D 144 O MET D 161 SHEET 1 AA6 4 ASN D 99 LEU D 104 0 SHEET 2 AA6 4 THR D 115 PHE D 123 -1 O VAL D 117 N SER D 103 SHEET 3 AA6 4 PHE D 156 GLU D 163 -1 O VAL D 158 N VAL D 120 SHEET 4 AA6 4 ILE D 149 ARG D 150 -1 N ILE D 149 O GLN D 157 SHEET 1 AA7 3 LYS D 129 ARG D 134 0 SHEET 2 AA7 3 VAL D 171 GLU D 177 -1 O HIS D 175 N ARG D 131 SHEET 3 AA7 3 ILE D 185 ARG D 190 -1 O VAL D 187 N CYS D 174 SHEET 1 AA8 5 VAL A 4 SER A 7 0 SHEET 2 AA8 5 ALA A 19 TYR A 25 -1 O SER A 24 N ARG A 5 SHEET 3 AA8 5 LYS A 72 ILE A 77 -1 O LEU A 73 N CYS A 23 SHEET 4 AA8 5 PHE A 62 ASN A 67 -1 N THR A 63 O HIS A 76 SHEET 5 AA8 5 LYS A 56 ASP A 59 -1 N LYS A 57 O ILE A 64 SHEET 1 AA9 5 SER A 10 TRP A 14 0 SHEET 2 AA9 5 THR A 108 HIS A 113 1 O HIS A 113 N VAL A 13 SHEET 3 AA9 5 ALA A 86 ALA A 92 -1 N ALA A 86 O LEU A 110 SHEET 4 AA9 5 TYR A 32 GLN A 38 -1 N GLN A 38 O THR A 87 SHEET 5 AA9 5 ALA A 45 ARG A 51 -1 O ILE A 48 N TRP A 35 SHEET 1 AB1 4 SER A 10 TRP A 14 0 SHEET 2 AB1 4 THR A 108 HIS A 113 1 O HIS A 113 N VAL A 13 SHEET 3 AB1 4 ALA A 86 ALA A 92 -1 N ALA A 86 O LEU A 110 SHEET 4 AB1 4 THR A 103 PHE A 104 -1 O THR A 103 N ALA A 92 SHEET 1 AB2 4 ALA A 122 GLN A 125 0 SHEET 2 AB2 4 SER A 135 THR A 140 -1 O LEU A 138 N TYR A 124 SHEET 3 AB2 4 ALA A 176 SER A 180 -1 O ALA A 178 N CYS A 137 SHEET 4 AB2 4 VAL A 156 THR A 159 -1 N TYR A 157 O TRP A 179 SHEET 1 AB3 5 VAL A 163 LEU A 164 0 SHEET 2 AB3 5 VAL B 166 THR B 168 -1 O THR B 168 N VAL A 163 SHEET 3 AB3 5 TYR B 184 SER B 193 -1 O ARG B 189 N CYS B 167 SHEET 4 AB3 5 LYS B 136 PHE B 146 -1 N ALA B 137 O VAL B 192 SHEET 5 AB3 5 GLU B 120 PHE B 124 -1 N GLU B 120 O THR B 144 SHEET 1 AB4 4 VAL A 163 LEU A 164 0 SHEET 2 AB4 4 VAL B 166 THR B 168 -1 O THR B 168 N VAL A 163 SHEET 3 AB4 4 TYR B 184 SER B 193 -1 O ARG B 189 N CYS B 167 SHEET 4 AB4 4 LEU B 173 LYS B 174 -1 N LEU B 173 O ALA B 185 SHEET 1 AB5 4 VAL B 2 SER B 5 0 SHEET 2 AB5 4 SER B 20 GLN B 23 -1 O ASN B 22 N THR B 3 SHEET 3 AB5 4 ASN B 71 LEU B 76 -1 O PHE B 72 N CYS B 21 SHEET 4 AB5 4 VAL B 17 THR B 18 -1 N VAL B 17 O LEU B 76 SHEET 1 AB6 4 VAL B 2 SER B 5 0 SHEET 2 AB6 4 SER B 20 GLN B 23 -1 O ASN B 22 N THR B 3 SHEET 3 AB6 4 ASN B 71 LEU B 76 -1 O PHE B 72 N CYS B 21 SHEET 4 AB6 4 TYR B 62 SER B 65 -1 N LYS B 63 O ILE B 75 SHEET 1 AB7 6 ASN B 8 VAL B 12 0 SHEET 2 AB7 6 THR B 105 LEU B 110 1 O LEU B 110 N ALA B 11 SHEET 3 AB7 6 SER B 85 GLY B 92 -1 N SER B 85 O LEU B 107 SHEET 4 AB7 6 ASN B 29 ASP B 36 -1 N TYR B 33 O PHE B 88 SHEET 5 AB7 6 GLY B 40 SER B 47 -1 O HIS B 45 N TRP B 32 SHEET 6 AB7 6 GLU B 54 LYS B 55 -1 O GLU B 54 N TYR B 46 SHEET 1 AB8 4 ASN B 8 VAL B 12 0 SHEET 2 AB8 4 THR B 105 LEU B 110 1 O LEU B 110 N ALA B 11 SHEET 3 AB8 4 SER B 85 GLY B 92 -1 N SER B 85 O LEU B 107 SHEET 4 AB8 4 TYR B 100 PHE B 101 -1 O TYR B 100 N SER B 91 SHEET 1 AB9 4 LYS B 160 VAL B 162 0 SHEET 2 AB9 4 VAL B 151 VAL B 157 -1 N TRP B 155 O VAL B 162 SHEET 3 AB9 4 HIS B 203 PHE B 210 -1 O GLN B 209 N GLU B 152 SHEET 4 AB9 4 GLN B 229 TRP B 236 -1 O ALA B 235 N PHE B 204 SSBOND 1 CYS C 107 CYS C 163 1555 1555 2.02 SSBOND 2 CYS D 15 CYS D 79 1555 1555 2.01 SSBOND 3 CYS D 118 CYS D 174 1555 1555 2.01 SSBOND 4 CYS A 23 CYS A 90 1555 1555 2.00 SSBOND 5 CYS A 137 CYS A 187 1555 1555 2.03 SSBOND 6 CYS A 162 CYS B 167 1555 1555 2.03 SSBOND 7 CYS B 21 CYS B 89 1555 1555 2.00 SSBOND 8 CYS B 141 CYS B 206 1555 1555 2.01 CISPEP 1 SER C 15 PRO C 16 0 -1.73 CISPEP 2 PHE C 113 PRO C 114 0 0.94 CISPEP 3 TYR D 124 PRO D 125 0 0.52 CISPEP 4 SER A 7 PRO A 8 0 -2.64 CISPEP 5 SER B 5 PRO B 6 0 4.51 CISPEP 6 TYR B 147 PRO B 148 0 5.94 CRYST1 250.057 69.030 64.687 90.00 91.51 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003999 0.000000 0.000105 0.00000 SCALE2 0.000000 0.014486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015464 0.00000