HEADER IMMUNE SYSTEM 02-OCT-18 6MNQ TITLE RHESUS MACAQUE ANTI-HIV V3 ANTIBODY DH727.2 WITH GP120 V3 ZAM18 TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN; COMPND 3 CHAIN: P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: AB DH727.2 HEAVY CHAIN FAB FRAGMENT; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: AB DH727.2 LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 4 ORGANISM_TAXID: 11676; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 7 ORGANISM_TAXID: 9544; SOURCE 8 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 9 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM_CELL_LINE: HEK-293; SOURCE 12 MOL_ID: 3; SOURCE 13 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 14 ORGANISM_TAXID: 9544; SOURCE 15 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 16 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HEK-293 KEYWDS HIV-1 GP120 V3 ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.I.NICELY REVDAT 3 11-OCT-23 6MNQ 1 REMARK REVDAT 2 18-DEC-19 6MNQ 1 REMARK REVDAT 1 24-JUL-19 6MNQ 0 JRNL AUTH Q.HAN,J.A.JONES,N.I.NICELY,R.K.REED,X.SHEN,K.MANSOURI, JRNL AUTH 2 M.LOUDER,A.M.TRAMA,S.M.ALAM,R.J.EDWARDS,M.BONSIGNORI, JRNL AUTH 3 G.D.TOMARAS,B.KORBER,D.C.MONTEFIORI,J.R.MASCOLA,M.S.SEAMAN, JRNL AUTH 4 B.F.HAYNES,K.O.SAUNDERS JRNL TITL DIFFICULT-TO-NEUTRALIZE GLOBAL HIV-1 ISOLATES ARE JRNL TITL 2 NEUTRALIZED BY ANTIBODIES TARGETING OPEN ENVELOPE JRNL TITL 3 CONFORMATIONS. JRNL REF NAT COMMUN V. 10 2898 2019 JRNL REFN ESSN 2041-1723 JRNL PMID 31263112 JRNL DOI 10.1038/S41467-019-10899-2 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 41254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1993 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9967 - 4.3426 0.97 2796 142 0.1505 0.1805 REMARK 3 2 4.3426 - 3.4486 0.99 2819 145 0.1562 0.1764 REMARK 3 3 3.4486 - 3.0132 0.99 2811 151 0.1847 0.2296 REMARK 3 4 3.0132 - 2.7380 0.99 2821 136 0.2090 0.2732 REMARK 3 5 2.7380 - 2.5418 0.99 2819 142 0.2077 0.2497 REMARK 3 6 2.5418 - 2.3920 1.00 2821 147 0.2101 0.2256 REMARK 3 7 2.3920 - 2.2723 1.00 2826 136 0.1962 0.2591 REMARK 3 8 2.2723 - 2.1734 1.00 2800 147 0.1961 0.2695 REMARK 3 9 2.1734 - 2.0898 1.00 2811 150 0.1981 0.2310 REMARK 3 10 2.0898 - 2.0177 1.00 2861 133 0.1977 0.2478 REMARK 3 11 2.0177 - 1.9546 1.00 2816 154 0.2007 0.2597 REMARK 3 12 1.9546 - 1.8987 1.00 2823 128 0.2033 0.2475 REMARK 3 13 1.8987 - 1.8488 1.00 2836 157 0.2108 0.2588 REMARK 3 14 1.8488 - 1.8037 0.93 2601 125 0.2074 0.2488 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.530 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3441 REMARK 3 ANGLE : 1.204 4678 REMARK 3 CHIRALITY : 0.048 538 REMARK 3 PLANARITY : 0.006 599 REMARK 3 DIHEDRAL : 13.896 1234 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN H AND RESID 1:31) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5640 -0.9190 -10.5179 REMARK 3 T TENSOR REMARK 3 T11: 0.1963 T22: 0.1834 REMARK 3 T33: 0.1900 T12: 0.0267 REMARK 3 T13: -0.0261 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 2.4536 L22: 3.1282 REMARK 3 L33: 2.2637 L12: -0.5005 REMARK 3 L13: 0.6536 L23: 1.2755 REMARK 3 S TENSOR REMARK 3 S11: -0.0544 S12: 0.1779 S13: 0.0319 REMARK 3 S21: -0.0371 S22: 0.0413 S23: 0.5081 REMARK 3 S31: 0.0705 S32: -0.5301 S33: 0.0246 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN H AND RESID 32:124) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3826 -0.5445 -8.4328 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1136 REMARK 3 T33: 0.1479 T12: 0.0113 REMARK 3 T13: -0.0257 T23: 0.0177 REMARK 3 L TENSOR REMARK 3 L11: 1.2129 L22: 1.0843 REMARK 3 L33: 2.4998 L12: -0.8651 REMARK 3 L13: -1.4924 L23: 1.5156 REMARK 3 S TENSOR REMARK 3 S11: 0.0869 S12: -0.0292 S13: 0.0918 REMARK 3 S21: -0.0486 S22: -0.0148 S23: -0.0273 REMARK 3 S31: -0.1726 S32: 0.0253 S33: -0.0935 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN H AND RESID 125:214) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4924 -22.8331 -27.9558 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.1236 REMARK 3 T33: 0.1412 T12: 0.0138 REMARK 3 T13: -0.0044 T23: 0.0097 REMARK 3 L TENSOR REMARK 3 L11: 2.8656 L22: 3.5970 REMARK 3 L33: 2.5705 L12: 0.4508 REMARK 3 L13: 0.0489 L23: -0.1976 REMARK 3 S TENSOR REMARK 3 S11: 0.0082 S12: 0.0670 S13: -0.3776 REMARK 3 S21: -0.0625 S22: 0.0624 S23: -0.0458 REMARK 3 S31: 0.1229 S32: -0.0193 S33: -0.0579 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN L AND RESID 1:105) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1997 -14.0742 8.2021 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.1093 REMARK 3 T33: 0.0934 T12: 0.0016 REMARK 3 T13: -0.0218 T23: 0.0024 REMARK 3 L TENSOR REMARK 3 L11: 1.3756 L22: 2.9278 REMARK 3 L33: 2.0290 L12: -0.3197 REMARK 3 L13: -0.1096 L23: 0.2584 REMARK 3 S TENSOR REMARK 3 S11: -0.0588 S12: -0.1099 S13: -0.0424 REMARK 3 S21: -0.0097 S22: 0.0147 S23: -0.0325 REMARK 3 S31: -0.0093 S32: -0.0169 S33: 0.0482 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN L AND RESID 106:160) REMARK 3 ORIGIN FOR THE GROUP (A): 4.7095 -24.4330 -19.0261 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1900 REMARK 3 T33: 0.1331 T12: -0.0135 REMARK 3 T13: -0.0166 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.1920 L22: 1.6012 REMARK 3 L33: 2.4849 L12: 0.5241 REMARK 3 L13: -1.9626 L23: -1.2852 REMARK 3 S TENSOR REMARK 3 S11: 0.0615 S12: -0.0983 S13: 0.0639 REMARK 3 S21: 0.0996 S22: -0.0890 S23: -0.0168 REMARK 3 S31: -0.0430 S32: 0.4512 S33: -0.0032 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN L AND RESID 161:213) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7776 -25.6964 -19.2772 REMARK 3 T TENSOR REMARK 3 T11: 0.1438 T22: 0.2361 REMARK 3 T33: 0.1448 T12: -0.0073 REMARK 3 T13: -0.0249 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 2.4482 L22: 1.3753 REMARK 3 L33: 3.9821 L12: 0.9002 REMARK 3 L13: -2.7938 L23: -1.7173 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: -0.1511 S13: -0.0848 REMARK 3 S21: 0.1047 S22: -0.1094 S23: -0.1562 REMARK 3 S31: 0.0761 S32: 0.4417 S33: 0.2316 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN P AND RESID 305:312) REMARK 3 ORIGIN FOR THE GROUP (A): -30.5446 -0.9306 11.9778 REMARK 3 T TENSOR REMARK 3 T11: 0.4002 T22: 0.4082 REMARK 3 T33: 0.3840 T12: 0.0147 REMARK 3 T13: 0.0459 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 1.8389 L22: 9.7692 REMARK 3 L33: 7.4050 L12: -2.8160 REMARK 3 L13: -1.1074 L23: 1.1921 REMARK 3 S TENSOR REMARK 3 S11: -0.1927 S12: -0.7465 S13: -0.9828 REMARK 3 S21: 0.7110 S22: 0.3065 S23: 0.5680 REMARK 3 S31: 0.6531 S32: -0.4685 S33: -0.1509 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN P AND RESID 313:318) REMARK 3 ORIGIN FOR THE GROUP (A): -29.6894 4.7574 12.4457 REMARK 3 T TENSOR REMARK 3 T11: 0.4249 T22: 0.4918 REMARK 3 T33: 0.3068 T12: 0.0682 REMARK 3 T13: 0.0392 T23: -0.0274 REMARK 3 L TENSOR REMARK 3 L11: 8.4697 L22: 6.4792 REMARK 3 L33: 0.9833 L12: 0.4574 REMARK 3 L13: 2.6855 L23: -0.6997 REMARK 3 S TENSOR REMARK 3 S11: 0.3110 S12: -0.5568 S13: 0.2044 REMARK 3 S21: 0.4364 S22: -0.0285 S23: 0.2284 REMARK 3 S31: -0.1000 S32: 0.0755 S33: -0.2981 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237250. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41285 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11300 REMARK 200 FOR THE DATA SET : 16.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.69000 REMARK 200 FOR SHELL : 3.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB 4HCR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS PH 8.5, 20% PEG 6,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.89000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN P 301 REMARK 465 ASN P 302 REMARK 465 THR P 303 REMARK 465 ARG P 304 REMARK 465 ALA P 319 REMARK 465 THR P 320 REMARK 465 GLY P 321 REMARK 465 GLY P 322 REMARK 465 ILE P 323 REMARK 465 ILE P 324 REMARK 465 GLY P 325 REMARK 465 SER H 127 REMARK 465 SER H 128 REMARK 465 ARG H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLU H 133 REMARK 465 SER H 134 REMARK 465 THR H 215 REMARK 465 CYS H 216 REMARK 465 GLY H 217 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU H 46 NH1 ARG H 62 1.92 REMARK 500 O HOH L 401 O HOH L 403 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 7 173.19 -57.67 REMARK 500 ARG H 98 -126.40 -113.30 REMARK 500 ALA L 51 -37.88 71.52 REMARK 500 SER L 67 -153.33 -84.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO P 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO P 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO L 301 DBREF1 6MNQ P 301 325 UNP A0A0K0KAD3_9HIV1 DBREF2 6MNQ P A0A0K0KAD3 71 93 DBREF 6MNQ H 1 217 PDB 6MNQ 6MNQ 1 217 DBREF 6MNQ L 1 214 PDB 6MNQ 6MNQ 1 214 SEQRES 1 P 23 ASN ASN THR ARG LYS SER ILE ARG ILE GLY PRO GLY GLN SEQRES 2 P 23 ALA PHE TYR ALA THR GLY GLY ILE ILE GLY SEQRES 1 H 221 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 221 PRO GLY ALA SER VAL LYS LEU SER CYS LYS ALA SER GLY SEQRES 3 H 221 ASN THR PHE SER ILE TYR GLY ILE SER TRP VAL ARG GLN SEQRES 4 H 221 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 221 PRO PRO ALA GLY LEU THR ASN TYR VAL GLN ARG PHE GLN SEQRES 6 H 221 GLY ARG VAL THR ILE THR ALA ASP THR SER THR THR THR SEQRES 7 H 221 VAL TYR MET GLU LEU SER SER LEU THR SER GLU ASP THR SEQRES 8 H 221 ALA VAL TYR TYR CYS ALA ILE ARG ILE GLY ARG GLY PHE SEQRES 9 H 221 ASP TYR TRP GLY GLN GLY VAL LEU VAL THR VAL SER SER SEQRES 10 H 221 ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SEQRES 11 H 221 SER SER ARG SER THR SER GLU SER THR ALA ALA LEU GLY SEQRES 12 H 221 CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SEQRES 13 H 221 SER TRP ASN SER GLY SER LEU THR SER GLY VAL HIS THR SEQRES 14 H 221 PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SER LEU SEQRES 15 H 221 SER SER VAL VAL THR VAL PRO SER SER SER LEU GLY THR SEQRES 16 H 221 GLN THR TYR VAL CYS ASN VAL ASN HIS LYS PRO SER ASN SEQRES 17 H 221 THR LYS VAL ASP LYS ARG VAL GLU ILE LYS THR CYS GLY SEQRES 1 L 220 ASP ILE VAL MET THR GLN SER PRO LEU SER LEU PRO VAL SEQRES 2 L 220 THR PRO GLY GLU THR ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 220 GLN SER LEU LEU ASP SER GLU ASP GLY ASN THR TYR LEU SEQRES 4 L 220 GLU TRP TYR LEU GLN LYS PRO GLY GLN SER PRO GLN ALA SEQRES 5 L 220 LEU ILE TYR GLU ALA SER ASN ARG ALA SER GLY VAL PRO SEQRES 6 L 220 ASP ARG PHE SER GLY SER GLY SER ASP THR ASP PHE THR SEQRES 7 L 220 LEU LYS ILE SER ARG VAL GLU ALA GLU ASP VAL GLY ILE SEQRES 8 L 220 TYR TYR CYS MET GLN THR ILE GLU TYR PRO PHE THR PHE SEQRES 9 L 220 GLY PRO GLY THR LYS VAL ASP ILE LYS ARG ALA VAL ALA SEQRES 10 L 220 ALA PRO SER VAL PHE ILE PHE PRO PRO SER GLU ASP GLN SEQRES 11 L 220 VAL LYS SER GLY THR VAL SER VAL VAL CYS LEU LEU ASN SEQRES 12 L 220 ASN PHE TYR PRO ARG GLU ALA SER VAL LYS TRP LYS VAL SEQRES 13 L 220 ASP GLY VAL LEU LYS THR GLY ASN SER GLN GLU SER VAL SEQRES 14 L 220 THR GLU GLN ASP SER LYS ASP ASN THR TYR SER LEU SER SEQRES 15 L 220 SER THR LEU THR LEU SER ASN THR ASP TYR GLN SER HIS SEQRES 16 L 220 ASN VAL TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SEQRES 17 L 220 SER PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET EDO P 401 4 HET EDO P 402 4 HET EDO L 301 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 4 EDO 3(C2 H6 O2) FORMUL 7 HOH *257(H2 O) HELIX 1 AA1 GLN H 61 GLN H 64 5 4 HELIX 2 AA2 THR H 83 THR H 87 5 5 HELIX 3 AA3 SER H 156 SER H 158 5 3 HELIX 4 AA4 PRO H 185 LEU H 189 5 5 HELIX 5 AA5 LYS H 201 ASN H 204 5 4 HELIX 6 AA6 GLU L 79 VAL L 83 5 5 HELIX 7 AA7 SER L 121 SER L 127 1 7 HELIX 8 AA8 ASN L 183 SER L 188 1 6 SHEET 1 AA1 2 ILE P 307 GLY P 312 0 SHEET 2 AA1 2 GLN P 315 PHE P 317 -1 O PHE P 317 N ILE P 307 SHEET 1 AA2 4 GLN H 3 GLN H 6 0 SHEET 2 AA2 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA2 4 THR H 77 LEU H 82 -1 O MET H 80 N LEU H 20 SHEET 4 AA2 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA3 6 GLU H 10 LYS H 12 0 SHEET 2 AA3 6 VAL H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA3 6 ALA H 88 ARG H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 6 GLY H 33 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA3 6 GLU H 46 ILE H 52 -1 O MET H 48 N TRP H 36 SHEET 6 AA3 6 LEU H 56 TYR H 59 -1 O LEU H 56 N ILE H 52 SHEET 1 AA4 4 GLU H 10 LYS H 12 0 SHEET 2 AA4 4 VAL H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA4 4 ALA H 88 ARG H 95 -1 N ALA H 88 O VAL H 109 SHEET 4 AA4 4 PHE H 100 TRP H 103 -1 O TYR H 102 N ILE H 94 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA5 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA6 4 SER H 120 LEU H 124 0 SHEET 2 AA6 4 ALA H 136 TYR H 145 -1 O LEU H 141 N PHE H 122 SHEET 3 AA6 4 TYR H 176 VAL H 184 -1 O LEU H 178 N VAL H 142 SHEET 4 AA6 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA7 3 THR H 151 TRP H 154 0 SHEET 2 AA7 3 VAL H 195 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA7 3 THR H 205 ARG H 210 -1 O VAL H 207 N VAL H 198 SHEET 1 AA8 4 MET L 4 SER L 7 0 SHEET 2 AA8 4 ALA L 19 SER L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA8 4 ASP L 70 ILE L 75 -1 O PHE L 71 N CYS L 23 SHEET 4 AA8 4 PHE L 62 GLY L 66 -1 N SER L 63 O LYS L 74 SHEET 1 AA9 6 SER L 10 VAL L 13 0 SHEET 2 AA9 6 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA9 6 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 AA9 6 LEU L 33 GLN L 38 -1 N GLU L 34 O MET L 89 SHEET 5 AA9 6 GLN L 45 TYR L 49 -1 O GLN L 45 N LEU L 37 SHEET 6 AA9 6 ASN L 53 ARG L 54 -1 O ASN L 53 N TYR L 49 SHEET 1 AB1 4 SER L 10 VAL L 13 0 SHEET 2 AB1 4 THR L 102 ILE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AB1 4 GLY L 84 GLN L 90 -1 N GLY L 84 O VAL L 104 SHEET 4 AB1 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB2 4 SER L 114 PHE L 118 0 SHEET 2 AB2 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AB2 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AB2 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB3 4 VAL L 153 LYS L 155 0 SHEET 2 AB3 4 SER L 145 VAL L 150 -1 N TRP L 148 O LYS L 155 SHEET 3 AB3 4 VAL L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 AB3 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.07 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.05 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.10 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.06 CISPEP 1 PHE H 146 PRO H 147 0 -4.01 CISPEP 2 GLU H 148 PRO H 149 0 -0.49 CISPEP 3 SER L 7 PRO L 8 0 -6.67 CISPEP 4 TYR L 94 PRO L 95 0 -5.70 CISPEP 5 TYR L 140 PRO L 141 0 1.22 SITE 1 AC1 3 ALA P 316 EDO P 402 HOH P 505 SITE 1 AC2 2 TYR P 318 EDO P 401 SITE 1 AC3 3 LYS L 39 GLN L 45 PRO L 59 CRYST1 41.511 95.780 58.049 90.00 92.67 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024090 0.000000 0.001125 0.00000 SCALE2 0.000000 0.010441 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017246 0.00000