HEADER VIRAL PROTEIN/INHIBITOR 03-OCT-18 6MO2 TITLE STRUCTURE OF DENGUE VIRUS PROTEASE WITH AN ALLOSTERIC INHIBITOR THAT TITLE 2 BLOCKS REPLICATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLAVIVIRUS_NS2B/PEPTIDASE S7; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 3 ORGANISM_TAXID: 11060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALLOSTERIC INHIBITOR, INHIBITOR, COMPLEX, PROTEASE, VIRAL PROTEIN, KEYWDS 2 VIRAL PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-L.LIN,S.NIE,Y.HUA,J.WU,F.WU,T.HUO,Y.YAO,Y.SONG REVDAT 2 11-OCT-23 6MO2 1 REMARK REVDAT 1 15-MAY-19 6MO2 0 JRNL AUTH Y.YAO,T.HUO,Y.L.LIN,S.NIE,F.WU,Y.HUA,J.WU,A.R.KNEUBEHL, JRNL AUTH 2 M.B.VOGT,R.RICO-HESSE,Y.SONG JRNL TITL DISCOVERY, X-RAY CRYSTALLOGRAPHY AND ANTIVIRAL ACTIVITY OF JRNL TITL 2 ALLOSTERIC INHIBITORS OF FLAVIVIRUS NS2B-NS3 PROTEASE. JRNL REF J.AM.CHEM.SOC. V. 141 6832 2019 JRNL REFN ESSN 1520-5126 JRNL PMID 31017399 JRNL DOI 10.1021/JACS.9B02505 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 12544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.246 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.310 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 670 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 938 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2950 REMARK 3 BIN FREE R VALUE SET COUNT : 40 REMARK 3 BIN FREE R VALUE : 0.4320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2512 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 66.26 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.41000 REMARK 3 B22 (A**2) : -3.41000 REMARK 3 B33 (A**2) : 11.05000 REMARK 3 B12 (A**2) : -1.70000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.400 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.343 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 38.692 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.861 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2634 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2492 ; 0.018 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3542 ; 1.503 ; 1.678 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5790 ; 1.737 ; 1.619 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 322 ; 4.575 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 116 ;39.996 ;23.103 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 460 ;29.265 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;20.725 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.072 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2898 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 536 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1306 ; 9.071 ; 6.588 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1305 ; 9.063 ; 6.589 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1622 ;11.698 ; 9.897 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1623 ;11.700 ; 9.896 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1326 ; 9.093 ; 7.397 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1327 ; 9.090 ; 7.395 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1920 ;11.499 ;10.692 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 9613 ;11.938 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 9614 ;11.937 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5121 ; 6.123 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 6MO2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237178. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16509 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.800 REMARK 200 R MERGE (I) : 0.21100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.94300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2FOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 35% PEG 200, 100 MM MES, PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 43 REMARK 465 SER A 44 REMARK 465 HIS A 45 REMARK 465 MET A 46 REMARK 465 LEU A 47 REMARK 465 PRO A 968 REMARK 465 ILE A 969 REMARK 465 LEU A 970 REMARK 465 SER A 971 REMARK 465 ILE A 972 REMARK 465 THR A 973 REMARK 465 ILE A 974 REMARK 465 SER A 975 REMARK 465 GLU A 976 REMARK 465 ASP A 977 REMARK 465 GLY A 978 REMARK 465 SER A 979 REMARK 465 MET A 980 REMARK 465 SER A 981 REMARK 465 ILE A 982 REMARK 465 LYS A 983 REMARK 465 ASN A 984 REMARK 465 GLU A 985 REMARK 465 GLU A 986 REMARK 465 GLU A 987 REMARK 465 GLU A 988 REMARK 465 GLN A 989 REMARK 465 THR A 990 REMARK 465 LEU A 991 REMARK 465 GLY A 992 REMARK 465 GLY A 993 REMARK 465 GLY A 994 REMARK 465 GLY A 995 REMARK 465 SER A 996 REMARK 465 GLY A 997 REMARK 465 GLY A 998 REMARK 465 GLY A 999 REMARK 465 GLY A 1000 REMARK 465 ALA A 1001 REMARK 465 GLY A 1002 REMARK 465 VAL A 1003 REMARK 465 LEU A 1004 REMARK 465 TRP A 1005 REMARK 465 ASP A 1006 REMARK 465 VAL A 1007 REMARK 465 PRO A 1008 REMARK 465 SER A 1009 REMARK 465 PRO A 1010 REMARK 465 PRO A 1011 REMARK 465 PRO A 1012 REMARK 465 VAL A 1013 REMARK 465 GLY A 1014 REMARK 465 LYS A 1015 REMARK 465 ALA A 1016 REMARK 465 GLU A 1017 REMARK 465 ASN A 1152 REMARK 465 GLY A 1153 REMARK 465 VAL A 1154 REMARK 465 VAL A 1155 REMARK 465 THR A 1156 REMARK 465 ARG A 1157 REMARK 465 SER A 1158 REMARK 465 GLY A 1159 REMARK 465 ALA A 1160 REMARK 465 TYR A 1161 REMARK 465 VAL A 1162 REMARK 465 SER A 1163 REMARK 465 ALA A 1164 REMARK 465 SER A 1171 REMARK 465 ILE A 1172 REMARK 465 GLU A 1173 REMARK 465 ASP A 1174 REMARK 465 ASN A 1175 REMARK 465 PRO A 1176 REMARK 465 GLU A 1177 REMARK 465 ILE A 1178 REMARK 465 GLU A 1179 REMARK 465 ASP A 1180 REMARK 465 ASP A 1181 REMARK 465 ILE A 1182 REMARK 465 PHE A 1183 REMARK 465 ARG A 1184 REMARK 465 LYS A 1185 REMARK 465 GLY B 43 REMARK 465 SER B 44 REMARK 465 HIS B 45 REMARK 465 MET B 46 REMARK 465 LEU B 47 REMARK 465 PRO B 968 REMARK 465 ILE B 969 REMARK 465 LEU B 970 REMARK 465 SER B 971 REMARK 465 ILE B 972 REMARK 465 THR B 973 REMARK 465 ILE B 974 REMARK 465 SER B 975 REMARK 465 GLU B 976 REMARK 465 ASP B 977 REMARK 465 GLY B 978 REMARK 465 SER B 979 REMARK 465 MET B 980 REMARK 465 SER B 981 REMARK 465 ILE B 982 REMARK 465 LYS B 983 REMARK 465 ASN B 984 REMARK 465 GLU B 985 REMARK 465 GLU B 986 REMARK 465 GLU B 987 REMARK 465 GLU B 988 REMARK 465 GLN B 989 REMARK 465 THR B 990 REMARK 465 LEU B 991 REMARK 465 GLY B 992 REMARK 465 GLY B 993 REMARK 465 GLY B 994 REMARK 465 GLY B 995 REMARK 465 SER B 996 REMARK 465 GLY B 997 REMARK 465 GLY B 998 REMARK 465 GLY B 999 REMARK 465 GLY B 1000 REMARK 465 ALA B 1001 REMARK 465 GLY B 1002 REMARK 465 VAL B 1003 REMARK 465 LEU B 1004 REMARK 465 TRP B 1005 REMARK 465 ASP B 1006 REMARK 465 VAL B 1007 REMARK 465 PRO B 1008 REMARK 465 SER B 1009 REMARK 465 PRO B 1010 REMARK 465 PRO B 1011 REMARK 465 PRO B 1012 REMARK 465 VAL B 1013 REMARK 465 GLY B 1014 REMARK 465 LYS B 1015 REMARK 465 ALA B 1016 REMARK 465 GLU B 1017 REMARK 465 ASN B 1152 REMARK 465 GLY B 1153 REMARK 465 VAL B 1154 REMARK 465 VAL B 1155 REMARK 465 THR B 1156 REMARK 465 ARG B 1157 REMARK 465 SER B 1158 REMARK 465 GLY B 1159 REMARK 465 ALA B 1160 REMARK 465 TYR B 1161 REMARK 465 VAL B 1162 REMARK 465 SER B 1163 REMARK 465 ALA B 1164 REMARK 465 SER B 1171 REMARK 465 ILE B 1172 REMARK 465 GLU B 1173 REMARK 465 ASP B 1174 REMARK 465 ASN B 1175 REMARK 465 PRO B 1176 REMARK 465 GLU B 1177 REMARK 465 ILE B 1178 REMARK 465 GLU B 1179 REMARK 465 ASP B 1180 REMARK 465 ASP B 1181 REMARK 465 ILE B 1182 REMARK 465 PHE B 1183 REMARK 465 ARG B 1184 REMARK 465 LYS B 1185 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N MET A 48 OG SER A 71 2565 1.17 REMARK 500 OE2 GLU A 1169 CD1 ILE B 1030 6455 1.48 REMARK 500 CD GLU A 1169 CD1 ILE B 1030 6455 1.67 REMARK 500 CD GLU A 1169 CG1 ILE B 1030 6455 1.67 REMARK 500 OE1 GLU A 1169 CG1 ILE B 1030 6455 1.74 REMARK 500 N MET B 48 OG SER B 71 3445 1.78 REMARK 500 CG LYS A 1143 CG LYS A 1143 5555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 53 CB - CA - C ANGL. DEV. = 13.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 57 -174.25 -175.95 REMARK 500 SER A 68 -159.51 64.20 REMARK 500 GLU A1019 141.77 92.74 REMARK 500 LYS A1061 -131.73 59.82 REMARK 500 GLU A1091 -21.39 101.66 REMARK 500 ALA B 57 -168.32 -175.71 REMARK 500 SER B 68 -121.10 60.94 REMARK 500 GLU B1019 110.15 78.54 REMARK 500 SER B1068 -54.85 -120.62 REMARK 500 GLU B1091 -7.84 94.33 REMARK 500 TYR B1150 109.02 -59.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JVM A 1201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JVM B 1201 DBREF1 6MO2 A 49 991 UNP A0A0B4L2Y4_9FLAV DBREF2 6MO2 A A0A0B4L2Y4 1394 1440 DBREF 6MO2 A 1001 1185 UNP Q91H74 Q91H74_9FLAV 1476 1660 DBREF1 6MO2 B 49 991 UNP A0A0B4L2Y4_9FLAV DBREF2 6MO2 B A0A0B4L2Y4 1394 1440 DBREF 6MO2 B 1001 1185 UNP Q91H74 Q91H74_9FLAV 1476 1660 SEQADV 6MO2 GLY A 43 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 SER A 44 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 HIS A 45 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 MET A 46 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 LEU A 47 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 MET A 48 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 GLY A 992 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 993 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 994 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 995 UNP A0A0B4L2Y LINKER SEQADV 6MO2 SER A 996 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 997 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 998 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 999 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY A 1000 UNP A0A0B4L2Y LINKER SEQADV 6MO2 ASN A 1167 UNP Q91H74 GLN 1642 CONFLICT SEQADV 6MO2 GLY B 43 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 SER B 44 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 HIS B 45 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 MET B 46 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 LEU B 47 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 MET B 48 UNP A0A0B4L2Y EXPRESSION TAG SEQADV 6MO2 GLY B 992 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 993 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 994 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 995 UNP A0A0B4L2Y LINKER SEQADV 6MO2 SER B 996 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 997 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 998 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 999 UNP A0A0B4L2Y LINKER SEQADV 6MO2 GLY B 1000 UNP A0A0B4L2Y LINKER SEQADV 6MO2 ASN B 1167 UNP Q91H74 GLN 1642 CONFLICT SEQRES 1 A 247 GLY SER HIS MET LEU MET ALA ASP LEU GLU LEU GLU ARG SEQRES 2 A 247 ALA ALA ASP VAL ARG TRP GLU GLU GLN ALA GLU ILE SER SEQRES 3 A 247 GLY SER SER PRO ILE LEU SER ILE THR ILE SER GLU ASP SEQRES 4 A 247 GLY SER MET SER ILE LYS ASN GLU GLU GLU GLU GLN THR SEQRES 5 A 247 LEU GLY GLY GLY GLY SER GLY GLY GLY GLY ALA GLY VAL SEQRES 6 A 247 LEU TRP ASP VAL PRO SER PRO PRO PRO VAL GLY LYS ALA SEQRES 7 A 247 GLU LEU GLU ASP GLY ALA TYR ARG ILE LYS GLN LYS GLY SEQRES 8 A 247 ILE LEU GLY TYR SER GLN ILE GLY ALA GLY VAL TYR LYS SEQRES 9 A 247 GLU GLY THR PHE HIS THR MET TRP HIS VAL THR ARG GLY SEQRES 10 A 247 ALA VAL LEU MET HIS LYS GLY LYS ARG ILE GLU PRO SER SEQRES 11 A 247 TRP ALA ASP VAL LYS LYS ASP LEU ILE SER TYR GLY GLY SEQRES 12 A 247 GLY TRP LYS LEU GLU GLY GLU TRP LYS GLU GLY GLU GLU SEQRES 13 A 247 VAL GLN VAL LEU ALA LEU GLU PRO GLY LYS ASN PRO ARG SEQRES 14 A 247 ALA VAL GLN THR LYS PRO GLY LEU PHE LYS THR ASN THR SEQRES 15 A 247 GLY THR ILE GLY ALA VAL SER LEU ASP PHE SER PRO GLY SEQRES 16 A 247 THR SER GLY SER PRO ILE VAL ASP LYS LYS GLY LYS VAL SEQRES 17 A 247 VAL GLY LEU TYR GLY ASN GLY VAL VAL THR ARG SER GLY SEQRES 18 A 247 ALA TYR VAL SER ALA ILE ALA ASN THR GLU LYS SER ILE SEQRES 19 A 247 GLU ASP ASN PRO GLU ILE GLU ASP ASP ILE PHE ARG LYS SEQRES 1 B 247 GLY SER HIS MET LEU MET ALA ASP LEU GLU LEU GLU ARG SEQRES 2 B 247 ALA ALA ASP VAL ARG TRP GLU GLU GLN ALA GLU ILE SER SEQRES 3 B 247 GLY SER SER PRO ILE LEU SER ILE THR ILE SER GLU ASP SEQRES 4 B 247 GLY SER MET SER ILE LYS ASN GLU GLU GLU GLU GLN THR SEQRES 5 B 247 LEU GLY GLY GLY GLY SER GLY GLY GLY GLY ALA GLY VAL SEQRES 6 B 247 LEU TRP ASP VAL PRO SER PRO PRO PRO VAL GLY LYS ALA SEQRES 7 B 247 GLU LEU GLU ASP GLY ALA TYR ARG ILE LYS GLN LYS GLY SEQRES 8 B 247 ILE LEU GLY TYR SER GLN ILE GLY ALA GLY VAL TYR LYS SEQRES 9 B 247 GLU GLY THR PHE HIS THR MET TRP HIS VAL THR ARG GLY SEQRES 10 B 247 ALA VAL LEU MET HIS LYS GLY LYS ARG ILE GLU PRO SER SEQRES 11 B 247 TRP ALA ASP VAL LYS LYS ASP LEU ILE SER TYR GLY GLY SEQRES 12 B 247 GLY TRP LYS LEU GLU GLY GLU TRP LYS GLU GLY GLU GLU SEQRES 13 B 247 VAL GLN VAL LEU ALA LEU GLU PRO GLY LYS ASN PRO ARG SEQRES 14 B 247 ALA VAL GLN THR LYS PRO GLY LEU PHE LYS THR ASN THR SEQRES 15 B 247 GLY THR ILE GLY ALA VAL SER LEU ASP PHE SER PRO GLY SEQRES 16 B 247 THR SER GLY SER PRO ILE VAL ASP LYS LYS GLY LYS VAL SEQRES 17 B 247 VAL GLY LEU TYR GLY ASN GLY VAL VAL THR ARG SER GLY SEQRES 18 B 247 ALA TYR VAL SER ALA ILE ALA ASN THR GLU LYS SER ILE SEQRES 19 B 247 GLU ASP ASN PRO GLU ILE GLU ASP ASP ILE PHE ARG LYS HET JVM A1201 33 HET JVM B1201 33 HETNAM JVM 1-(4-{5-[(PIPERIDIN-4-YL)METHOXY]-3-[4-(1H-PYRAZOL-4- HETNAM 2 JVM YL)PHENYL]PYRAZIN-2-YL}PHENYL)METHANAMINE FORMUL 3 JVM 2(C26 H28 N6 O) HELIX 1 AA1 MET A 1049 ARG A 1054 1 6 HELIX 2 AA2 SER A 1131 SER A 1135 5 5 HELIX 3 AA3 MET B 1049 ARG B 1054 1 6 HELIX 4 AA4 SER B 1131 SER B 1135 5 5 SHEET 1 AA1 8 LYS A1063 ILE A1065 0 SHEET 2 AA1 8 LEU A1058 HIS A1060 -1 N LEU A1058 O ILE A1065 SHEET 3 AA1 8 LEU A 51 ALA A 57 1 N LEU A 51 O MET A1059 SHEET 4 AA1 8 GLY A1021 LYS A1028 -1 O ARG A1024 N GLU A 54 SHEET 5 AA1 8 TYR A1033 LYS A1042 -1 O TYR A1041 N GLY A1021 SHEET 6 AA1 8 THR A1045 THR A1048 -1 O HIS A1047 N VAL A1040 SHEET 7 AA1 8 LEU A1076 TYR A1079 -1 O TYR A1079 N PHE A1046 SHEET 8 AA1 8 PRO A1067 ASP A1071 -1 N TRP A1069 O SER A1078 SHEET 1 AA2 4 ARG A1107 THR A1111 0 SHEET 2 AA2 4 VAL A1095 ALA A1099 -1 N VAL A1095 O THR A1111 SHEET 3 AA2 4 PRO A1138 VAL A1140 -1 O PRO A1138 N LEU A1098 SHEET 4 AA2 4 VAL A1146 LEU A1149 -1 O GLY A1148 N ILE A1139 SHEET 1 AA3 3 GLY A1114 PHE A1116 0 SHEET 2 AA3 3 ILE A1123 ALA A1125 -1 O ALA A1125 N GLY A1114 SHEET 3 AA3 3 ALA A1166 ASN A1167 -1 O ALA A1166 N GLY A1124 SHEET 1 AA4 8 ARG B1064 ILE B1065 0 SHEET 2 AA4 8 LEU B1058 MET B1059 -1 N LEU B1058 O ILE B1065 SHEET 3 AA4 8 ASP B 50 ALA B 57 1 N LEU B 53 O MET B1059 SHEET 4 AA4 8 GLY B1021 LYS B1028 -1 O LYS B1026 N GLU B 52 SHEET 5 AA4 8 TYR B1033 LYS B1042 -1 O GLY B1037 N ILE B1025 SHEET 6 AA4 8 THR B1045 THR B1048 -1 O THR B1045 N LYS B1042 SHEET 7 AA4 8 LEU B1076 TYR B1079 -1 O TYR B1079 N PHE B1046 SHEET 8 AA4 8 PRO B1067 ASP B1071 -1 N ASP B1071 O LEU B1076 SHEET 1 AA5 4 ARG B1107 THR B1111 0 SHEET 2 AA5 4 VAL B1095 ALA B1099 -1 N VAL B1095 O THR B1111 SHEET 3 AA5 4 PRO B1138 VAL B1140 -1 O VAL B1140 N GLN B1096 SHEET 4 AA5 4 VAL B1146 LEU B1149 -1 O GLY B1148 N ILE B1139 SHEET 1 AA6 3 GLY B1114 PHE B1116 0 SHEET 2 AA6 3 ILE B1123 ALA B1125 -1 O ALA B1125 N GLY B1114 SHEET 3 AA6 3 ALA B1166 ASN B1167 -1 O ALA B1166 N GLY B1124 SITE 1 AC1 9 VAL A1072 LYS A1073 LYS A1074 ASP A1075 SITE 2 AC1 9 LEU A1076 THR A1120 LEU A1149 GLY A1151 SITE 3 AC1 9 ILE A1165 SITE 1 AC2 7 ARG B1054 LYS B1073 LYS B1074 ASP B1075 SITE 2 AC2 7 LEU B1149 GLY B1151 ILE B1165 CRYST1 109.155 109.155 76.003 90.00 90.00 120.00 P 3 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009161 0.005289 0.000000 0.00000 SCALE2 0.000000 0.010579 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013157 0.00000