HEADER VIRAL PROTEIN 08-OCT-18 6MPO TITLE SF6 COAT PROTEIN I-DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GENE 5 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: I-DOMAIN, RESIDUES 222-345; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA PHAGE SF6; SOURCE 3 ORGANISM_COMMON: SHIGELLA FLEXNERI BACTERIOPHAGE VI; SOURCE 4 ORGANISM_TAXID: 10761; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS COAT PROTEIN, INSERTION DOMAIN, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR T.N.TRIPLER,A.R.KAPLAN,A.T.ALEXANDRESCU,C.M.TESCHKE REVDAT 4 15-MAY-24 6MPO 1 REMARK REVDAT 3 14-JUN-23 6MPO 1 REMARK REVDAT 2 01-JAN-20 6MPO 1 REMARK REVDAT 1 20-FEB-19 6MPO 0 JRNL AUTH T.N.TRIPLER,A.R.KAPLAN,A.T.ALEXANDRESCU,C.M.TESCHKE JRNL TITL SF6 COAT PROTEIN I-DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MPO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237285. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-99% 15N] SF6 REMARK 210 BACTERIOPHAGE COAT PROTEIN I- REMARK 210 DOMAIN, 20 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 2.1 MM [U-99% REMARK 210 13C; U-99% 15N] SF6 REMARK 210 BACTERIOPHAGE COAT PROTEIN I- REMARK 210 DOMAIN, 20 MM SODIUM PHOSPHATE, REMARK 210 90% H2O/10% D2O; 1.5 MM [U-99% REMARK 210 15N] SF6 BACTERIOPHAGE COAT REMARK 210 PROTEIN I-DOMAIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH; REMARK 210 3D HNCACB; HN(CA)CO; 3D HNCO; 3D REMARK 210 HCCH-TOCSY; 3D CCH-TOCSY; 3D REMARK 210 HBHA(CO)NH; 3D 1H-15N TOCSY; 2D REMARK 210 NOESY; 2D DQF-COSY; 2D TOCSY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 15N NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX, NMRPIPE, ANALYSIS, ARIA, REMARK 210 X-PLOR NIH, CCPNMR REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-25 REMARK 465 RES C SSSEQI REMARK 465 LEU A 346 REMARK 465 GLU A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 HIS A 352 REMARK 465 HIS A 353 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 232 -168.45 -128.71 REMARK 500 1 THR A 237 112.04 -20.38 REMARK 500 1 ALA A 256 -176.17 -60.48 REMARK 500 1 SER A 257 6.30 81.05 REMARK 500 1 LEU A 276 47.08 -81.00 REMARK 500 1 ALA A 283 -171.60 -177.82 REMARK 500 1 LEU A 284 71.95 61.59 REMARK 500 1 ASN A 286 167.16 65.89 REMARK 500 1 ILE A 291 95.10 64.13 REMARK 500 1 PHE A 293 -135.81 -142.71 REMARK 500 1 ALA A 299 -172.28 -171.82 REMARK 500 1 PRO A 317 92.09 -63.31 REMARK 500 1 TYR A 319 -13.55 79.70 REMARK 500 1 GLN A 325 -41.37 72.93 REMARK 500 1 TYR A 326 -32.14 75.73 REMARK 500 1 THR A 344 -82.05 -120.29 REMARK 500 2 THR A 237 93.65 64.57 REMARK 500 2 THR A 255 -177.80 -69.48 REMARK 500 2 ALA A 256 -175.98 -64.39 REMARK 500 2 SER A 257 9.05 80.24 REMARK 500 2 TRP A 275 81.16 -158.23 REMARK 500 2 LEU A 276 -74.93 -107.38 REMARK 500 2 ALA A 283 -57.02 67.16 REMARK 500 2 TYR A 285 92.31 60.51 REMARK 500 2 ASP A 320 -38.85 -172.98 REMARK 500 2 PRO A 324 20.23 -74.41 REMARK 500 2 GLN A 325 -50.81 74.44 REMARK 500 2 VAL A 329 103.48 64.85 REMARK 500 2 SER A 330 -69.41 -98.42 REMARK 500 2 THR A 344 -67.15 -127.07 REMARK 500 3 PHE A 224 46.51 -82.46 REMARK 500 3 THR A 232 -169.33 -119.87 REMARK 500 3 THR A 237 108.51 69.12 REMARK 500 3 ALA A 256 -176.39 -65.03 REMARK 500 3 SER A 257 6.97 80.20 REMARK 500 3 ALA A 288 -151.31 -162.42 REMARK 500 3 PHE A 293 -144.16 -161.71 REMARK 500 3 PRO A 317 48.43 -81.67 REMARK 500 3 TYR A 319 36.05 73.02 REMARK 500 3 THR A 321 -155.22 -149.68 REMARK 500 3 GLN A 325 67.00 -107.38 REMARK 500 3 TYR A 326 -39.92 73.25 REMARK 500 3 ASN A 327 114.81 -172.28 REMARK 500 3 VAL A 333 107.34 -44.80 REMARK 500 3 THR A 344 -75.80 -102.17 REMARK 500 4 ALA A 223 -78.32 -117.69 REMARK 500 4 THR A 237 112.96 -14.73 REMARK 500 4 LEU A 284 63.85 64.72 REMARK 500 4 SER A 292 -147.76 -162.95 REMARK 500 4 PRO A 317 47.01 -96.80 REMARK 500 REMARK 500 THIS ENTRY HAS 344 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26844 RELATED DB: BMRB DBREF 6MPO A 222 345 UNP Q716H0 Q716H0_BPSFV 222 345 SEQADV 6MPO LEU A 346 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO GLU A 347 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 348 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 349 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 350 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 351 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 352 UNP Q716H0 EXPRESSION TAG SEQADV 6MPO HIS A 353 UNP Q716H0 EXPRESSION TAG SEQRES 1 A 132 GLY ALA PHE GLY GLY THR LEU THR VAL LYS THR GLN PRO SEQRES 2 A 132 THR VAL THR TYR ASN ALA VAL LYS ASP SER TYR GLN PHE SEQRES 3 A 132 THR VAL THR LEU THR GLY ALA THR ALA SER VAL THR GLY SEQRES 4 A 132 PHE LEU LYS ALA GLY ASP GLN VAL LYS PHE THR ASN THR SEQRES 5 A 132 TYR TRP LEU GLN GLN GLN THR LYS GLN ALA LEU TYR ASN SEQRES 6 A 132 GLY ALA THR PRO ILE SER PHE THR ALA THR VAL THR ALA SEQRES 7 A 132 ASP ALA ASN SER ASP SER GLY GLY ASP VAL THR VAL THR SEQRES 8 A 132 LEU SER GLY VAL PRO ILE TYR ASP THR THR ASN PRO GLN SEQRES 9 A 132 TYR ASN SER VAL SER ARG GLN VAL GLU ALA GLY ASP ALA SEQRES 10 A 132 VAL SER VAL VAL GLY THR ALA LEU GLU HIS HIS HIS HIS SEQRES 11 A 132 HIS HIS HELIX 1 AA1 GLN A 277 GLN A 282 1 6 SHEET 1 AA1 8 TYR A 238 ASN A 239 0 SHEET 2 AA1 8 SER A 244 THR A 252 -1 O SER A 244 N ASN A 239 SHEET 3 AA1 8 ASP A 308 SER A 314 -1 O LEU A 313 N PHE A 247 SHEET 4 AA1 8 THR A 294 VAL A 297 -1 N THR A 296 O SER A 314 SHEET 5 AA1 8 GLN A 267 THR A 271 -1 N VAL A 268 O ALA A 295 SHEET 6 AA1 8 ALA A 338 VAL A 341 -1 O SER A 340 N LYS A 269 SHEET 7 AA1 8 THR A 227 VAL A 230 -1 N LEU A 228 O VAL A 339 SHEET 8 AA1 8 SER A 244 THR A 252 -1 O THR A 252 N THR A 229 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1