HEADER IMMUNE SYSTEM 10-OCT-18 6MQR TITLE VACCINE-ELICITED NHP FP-TARGETING NEUTRALIZING ANTIBODY 0PV-A.01 IN TITLE 2 COMPLEX WITH FP (RESIDUE 512-519) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY 0PV-A.01 FAB HEAVY CHAIN; COMPND 3 CHAIN: H; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY 0PV-A.01 FAB LIGHT CHAIN; COMPND 7 CHAIN: L; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: HIV FUSION PEPTIDE RESIDUE 512-519; COMPND 11 CHAIN: A; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_TAXID: 9544; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 8 ORGANISM_TAXID: 9544; SOURCE 9 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 14 ORGANISM_TAXID: 11676 KEYWDS HIV, NEUTRALIZING, NHP, FP, FUSION PEPTIDE, VACCINE, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR K.XU,Y.WANG,P.D.KWONG REVDAT 3 13-NOV-19 6MQR 1 SOURCE REVDAT 2 07-AUG-19 6MQR 1 JRNL REVDAT 1 31-JUL-19 6MQR 0 JRNL AUTH R.KONG,H.DUAN,Z.SHENG,K.XU,P.ACHARYA,X.CHEN,C.CHENG, JRNL AUTH 2 A.S.DINGENS,J.GORMAN,M.SASTRY,C.H.SHEN,B.ZHANG,T.ZHOU, JRNL AUTH 3 G.Y.CHUANG,C.W.CHAO,Y.GU,A.J.JAFARI,M.K.LOUDER,S.O'DELL, JRNL AUTH 4 A.P.ROWSHAN,E.G.VIOX,Y.WANG,C.W.CHOI,M.M.CORCORAN, JRNL AUTH 5 A.R.CORRIGAN,V.P.DANDEY,E.T.ENG,H.GENG,K.E.FOULDS,Y.GUO, JRNL AUTH 6 Y.D.KWON,B.LIN,K.LIU,R.D.MASON,M.C.NASON,T.Y.OHR,L.OU, JRNL AUTH 7 R.RAWI,E.K.SARFO,A.SCHON,J.P.TODD,S.WANG,H.WEI,W.WU, JRNL AUTH 8 J.C.MULLIKIN,R.T.BAILER,N.A.DORIA-ROSE, JRNL AUTH 9 G.B.KARLSSON HEDESTAM,D.G.SCORPIO,J.OVERBAUGH,J.D.BLOOM, JRNL AUTH10 B.CARRAGHER,C.S.POTTER,L.SHAPIRO,P.D.KWONG,J.R.MASCOLA JRNL TITL ANTIBODY LINEAGES WITH VACCINE-INDUCED ANTIGEN-BINDING JRNL TITL 2 HOTSPOTS DEVELOP BROAD HIV NEUTRALIZATION. JRNL REF CELL V. 178 567 2019 JRNL REFN ISSN 1097-4172 JRNL PMID 31348886 JRNL DOI 10.1016/J.CELL.2019.06.030 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 24733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1256 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.5678 - 5.0930 0.99 2682 150 0.1713 0.1805 REMARK 3 2 5.0930 - 4.0435 0.99 2621 133 0.1410 0.1623 REMARK 3 3 4.0435 - 3.5326 0.99 2571 147 0.1697 0.2103 REMARK 3 4 3.5326 - 3.2098 1.00 2602 139 0.1826 0.2342 REMARK 3 5 3.2098 - 2.9798 1.00 2638 129 0.1953 0.2387 REMARK 3 6 2.9798 - 2.8041 1.00 2597 122 0.2038 0.2573 REMARK 3 7 2.8041 - 2.6637 1.00 2612 139 0.2046 0.2740 REMARK 3 8 2.6637 - 2.5478 1.00 2585 142 0.2098 0.2827 REMARK 3 9 2.5478 - 2.4497 1.00 2569 155 0.2239 0.2819 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 3511 REMARK 3 ANGLE : 1.372 4787 REMARK 3 CHIRALITY : 0.073 548 REMARK 3 PLANARITY : 0.007 608 REMARK 3 DIHEDRAL : 13.640 2079 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MQR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237405. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-FEB-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24735 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M NH4CH3CO2, 0.085 M ACETATE PH REMARK 280 4.6, 25.5% W/V PEG 4000, AND 15% GLYCEROL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 79.62500 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 79.62500 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 79.62500 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 79.62500 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 79.62500 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 79.62500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY H 217 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS L 39 O HOH L 401 1.98 REMARK 500 OG SER L 7 O HOH L 402 2.15 REMARK 500 O THR H 191 O HOH H 401 2.16 REMARK 500 OG SER L 202 O HOH L 403 2.16 REMARK 500 NZ LYS H 143 O HOH H 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CB ASP H 84 OE2 GLU L 185 2655 1.84 REMARK 500 O HOH H 456 O HOH L 428 23555 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU L 185 CA GLU L 185 CB 0.137 REMARK 500 GLU L 185 CB GLU L 185 CG 0.122 REMARK 500 GLU L 185 CG GLU L 185 CD 0.124 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU L 185 N - CA - CB ANGL. DEV. = 13.4 DEGREES REMARK 500 GLU L 185 OE1 - CD - OE2 ANGL. DEV. = -22.2 DEGREES REMARK 500 GLU L 185 CG - CD - OE2 ANGL. DEV. = 15.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER H 15 -1.95 80.74 REMARK 500 ALA H 88 167.87 179.32 REMARK 500 ASN H 100A 81.89 -166.26 REMARK 500 LYS L 30 -124.55 56.37 REMARK 500 SER L 51 -36.64 77.64 REMARK 500 SER L 52 2.08 -150.28 REMARK 500 TYR L 91 34.66 -140.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN L 137 OD1 REMARK 620 2 ASN L 138 OD1 70.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA L 302 DBREF 6MQR H 1 217 PDB 6MQR 6MQR 1 217 DBREF 6MQR L 1 214 PDB 6MQR 6MQR 1 214 DBREF 6MQR A 512 519 PDB 6MQR 6MQR 512 519 SEQRES 1 H 228 GLU VAL GLN LEU VAL GLU SER GLY PRO GLY VAL MET LYS SEQRES 2 H 228 PRO SER GLU THR LEU SER LEU ILE CYS ALA VAL SER GLY SEQRES 3 H 228 ASP THR ILE SER SER PRO TYR TYR PHE TRP SER TRP VAL SEQRES 4 H 228 ARG GLN PRO ARG GLY LYS GLY LEU GLU TRP ILE GLY GLY SEQRES 5 H 228 LEU TYR SER ASN THR MET ASP VAL TYR TYR ASN PRO SER SEQRES 6 H 228 LEU GLN SER ARG VAL THR ILE SER ARG ASP THR SER LYS SEQRES 7 H 228 ASN HIS PHE SER LEU LYS VAL THR SER VAL THR ASP THR SEQRES 8 H 228 ASP THR ALA VAL TYR TYR CYS ALA ARG GLU ARG VAL VAL SEQRES 9 H 228 ALA HIS ASN TYR TYR GLY LEU ASP LEU TRP GLY GLN GLY SEQRES 10 H 228 VAL ALA VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 228 SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SER SEQRES 12 H 228 GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 228 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SER SEQRES 14 H 228 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 228 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 228 PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS ASN SEQRES 17 H 228 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 H 228 VAL GLU ILE LYS THR CYS GLY SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG ALA SER SEQRES 3 L 214 GLN ASP ILE LYS ASN SER LEU SER TRP TYR GLN GLN LYS SEQRES 4 L 214 LEU GLY LYS ALA PRO ARG ARG LEU MET HIS HIS SER SER SEQRES 5 L 214 THR LEU GLU THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY TYR GLY THR GLU PHE THR LEU SER ILE ASN SER LEU SEQRES 7 L 214 GLN PRO GLU ASP ILE ALA ALA TYR TYR CYS GLN GLN TYR SEQRES 8 L 214 GLU ASP PHE PRO LEU THR PHE GLY GLY GLY THR GLN VAL SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA SER VAL LYS TRP LYS VAL ASP GLY ALA LEU LYS THR SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 SER THR GLU TYR GLN SER HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 A 8 ALA VAL GLY ILE GLY ALA VAL PHE HET SO4 H 301 5 HET SO4 L 301 5 HET CA L 302 1 HETNAM SO4 SULFATE ION HETNAM CA CALCIUM ION FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 CA CA 2+ FORMUL 7 HOH *131(H2 O) HELIX 1 AA1 THR H 83 THR H 87 5 5 HELIX 2 AA2 VAL H 98 ASN H 100A 5 4 HELIX 3 AA3 SER H 187 GLY H 190 5 4 HELIX 4 AA4 LYS H 201 ASN H 204 5 4 HELIX 5 AA5 GLN L 79 ILE L 83 5 5 HELIX 6 AA6 SER L 121 SER L 127 1 7 HELIX 7 AA7 SER L 183 GLN L 187 1 5 HELIX 8 AA8 VAL A 513 ALA A 517 5 5 SHEET 1 AA1 4 GLN H 3 SER H 7 0 SHEET 2 AA1 4 LEU H 18 SER H 25 -1 O ILE H 21 N SER H 7 SHEET 3 AA1 4 HIS H 77 VAL H 82 -1 O LEU H 80 N LEU H 20 SHEET 4 AA1 4 VAL H 67 ASP H 72 -1 N SER H 70 O SER H 79 SHEET 1 AA2 6 VAL H 11 MET H 12 0 SHEET 2 AA2 6 VAL H 107 VAL H 111 1 O THR H 110 N MET H 12 SHEET 3 AA2 6 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA2 6 TYR H 32 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA2 6 GLU H 46 TYR H 52 -1 O LEU H 51 N TRP H 34 SHEET 6 AA2 6 VAL H 57 TYR H 59 -1 O TYR H 58 N GLY H 50 SHEET 1 AA3 4 VAL H 11 MET H 12 0 SHEET 2 AA3 4 VAL H 107 VAL H 111 1 O THR H 110 N MET H 12 SHEET 3 AA3 4 ALA H 88 ARG H 96 -1 N ALA H 88 O VAL H 109 SHEET 4 AA3 4 LEU H 102 TRP H 103 -1 O LEU H 102 N ARG H 94 SHEET 1 AA4 4 SER H 120 LEU H 124 0 SHEET 2 AA4 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA4 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA4 4 HIS H 164 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AA5 4 SER H 120 LEU H 124 0 SHEET 2 AA5 4 THR H 135 TYR H 145 -1 O GLY H 139 N LEU H 124 SHEET 3 AA5 4 TYR H 176 PRO H 185 -1 O LEU H 178 N VAL H 142 SHEET 4 AA5 4 VAL H 169 LEU H 170 -1 N VAL H 169 O SER H 177 SHEET 1 AA6 3 THR H 151 TRP H 154 0 SHEET 2 AA6 3 TYR H 194 HIS H 200 -1 O ASN H 197 N SER H 153 SHEET 3 AA6 3 THR H 205 VAL H 211 -1 O VAL H 211 N TYR H 194 SHEET 1 AA7 4 MET L 4 SER L 7 0 SHEET 2 AA7 4 VAL L 19 ALA L 25 -1 O THR L 22 N SER L 7 SHEET 3 AA7 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA7 4 PHE L 62 GLY L 66 -1 N SER L 63 O SER L 74 SHEET 1 AA8 6 SER L 10 SER L 14 0 SHEET 2 AA8 6 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA8 6 ALA L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA8 6 LEU L 33 GLN L 38 -1 N GLN L 38 O ALA L 85 SHEET 5 AA8 6 ARG L 45 HIS L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA8 6 THR L 53 LEU L 54 -1 O THR L 53 N HIS L 49 SHEET 1 AA9 4 SER L 10 SER L 14 0 SHEET 2 AA9 4 THR L 102 LYS L 107 1 O GLU L 105 N LEU L 11 SHEET 3 AA9 4 ALA L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA9 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB1 4 SER L 114 PHE L 118 0 SHEET 2 AB1 4 THR L 129 PHE L 139 -1 O ASN L 137 N SER L 114 SHEET 3 AB1 4 TYR L 173 SER L 182 -1 O LEU L 181 N VAL L 130 SHEET 4 AB1 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB2 4 ALA L 153 LYS L 155 0 SHEET 2 AB2 4 SER L 145 VAL L 150 -1 N TRP L 148 O LYS L 155 SHEET 3 AB2 4 VAL L 191 THR L 197 -1 O GLU L 195 N LYS L 147 SHEET 4 AB2 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS H 22 CYS H 92 1555 1555 2.12 SSBOND 2 CYS H 140 CYS H 196 1555 1555 2.09 SSBOND 3 CYS L 23 CYS L 88 1555 1555 2.07 SSBOND 4 CYS L 134 CYS L 194 1555 1555 2.07 LINK OD1 ASN L 137 CA CA L 302 1555 1555 2.35 LINK OD1 ASN L 138 CA CA L 302 1555 1555 2.76 CISPEP 1 PHE H 146 PRO H 147 0 -9.16 CISPEP 2 GLU H 148 PRO H 149 0 -5.96 CISPEP 3 SER L 7 PRO L 8 0 -6.23 CISPEP 4 PHE L 94 PRO L 95 0 -2.02 CISPEP 5 TYR L 140 PRO L 141 0 3.11 SITE 1 AC1 2 LYS H 75 HIS H 77 SITE 1 AC2 4 VAL H 98 HIS L 49 HIS L 50 THR L 53 SITE 1 AC3 4 HIS H 164 THR H 183 ASN L 137 ASN L 138 CRYST1 159.250 159.250 159.250 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006279 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006279 0.00000