HEADER PROTEIN BINDING 11-OCT-18 6MR1 TITLE RBCS-LIKE SUBDOMAIN OF CCMM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBON DIOXIDE CONCENTRATING MECHANISM PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1); SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: CCMM; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS CARBOXYSOME, RUBISCO, CCMM, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.RYAN,M.S.KIMBER REVDAT 6 13-MAR-24 6MR1 1 LINK REVDAT 5 08-JAN-20 6MR1 1 REMARK REVDAT 4 20-NOV-19 6MR1 1 LINK REVDAT 3 06-MAR-19 6MR1 1 JRNL REVDAT 2 09-JAN-19 6MR1 1 JRNL REVDAT 1 02-JAN-19 6MR1 0 JRNL AUTH P.RYAN,T.J.B.FORRESTER,C.WROBLEWSKI,T.M.G.KENNEY,E.N.KITOVA, JRNL AUTH 2 J.S.KLASSEN,M.S.KIMBER JRNL TITL THE SMALL RBCS-LIKE DOMAINS OF THE BETA-CARBOXYSOME JRNL TITL 2 STRUCTURAL PROTEIN CCMM BIND RUBISCO AT A SITE DISTINCT FROM JRNL TITL 3 THAT BINDING THE RBCS SUBUNIT. JRNL REF J. BIOL. CHEM. V. 294 2593 2019 JRNL REFN ESSN 1083-351X JRNL PMID 30591587 JRNL DOI 10.1074/JBC.RA118.006330 REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.12_2829: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 36146 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.3004 - 3.1737 0.99 2868 151 0.1626 0.1805 REMARK 3 2 3.1737 - 2.5192 1.00 2739 145 0.1737 0.1857 REMARK 3 3 2.5192 - 2.2008 0.99 2682 141 0.1578 0.1939 REMARK 3 4 2.2008 - 1.9996 0.99 2678 141 0.1593 0.1876 REMARK 3 5 1.9996 - 1.8563 0.99 2667 140 0.1687 0.1935 REMARK 3 6 1.8563 - 1.7469 0.99 2622 138 0.1698 0.2146 REMARK 3 7 1.7469 - 1.6594 0.99 2629 138 0.1812 0.2161 REMARK 3 8 1.6594 - 1.5871 0.98 2598 137 0.1803 0.1802 REMARK 3 9 1.5871 - 1.5260 0.99 2624 138 0.1931 0.2241 REMARK 3 10 1.5260 - 1.4734 0.97 2568 136 0.1969 0.2049 REMARK 3 11 1.4734 - 1.4273 0.98 2599 136 0.2099 0.2594 REMARK 3 12 1.4273 - 1.3865 0.97 2538 134 0.2237 0.2671 REMARK 3 13 1.3865 - 1.3500 0.95 2526 133 0.2546 0.2743 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 1667 REMARK 3 ANGLE : 1.593 2292 REMARK 3 CHIRALITY : 0.103 247 REMARK 3 PLANARITY : 0.009 304 REMARK 3 DIHEDRAL : 26.642 700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 252 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.1361 24.0705 50.5921 REMARK 3 T TENSOR REMARK 3 T11: 0.1306 T22: 0.2217 REMARK 3 T33: 0.1532 T12: -0.0014 REMARK 3 T13: 0.0193 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 5.6696 L22: 2.1986 REMARK 3 L33: 5.4044 L12: -0.0746 REMARK 3 L13: 1.2583 L23: 1.0498 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.1108 S13: 0.4996 REMARK 3 S21: 0.2236 S22: -0.0476 S23: -0.4108 REMARK 3 S31: -0.3248 S32: 0.1256 S33: 0.1291 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 272 THROUGH 285 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7825 12.9672 51.1529 REMARK 3 T TENSOR REMARK 3 T11: 0.1324 T22: 0.2043 REMARK 3 T33: 0.1012 T12: -0.0546 REMARK 3 T13: 0.0018 T23: 0.0575 REMARK 3 L TENSOR REMARK 3 L11: 5.5875 L22: 8.0744 REMARK 3 L33: 5.5185 L12: 1.2971 REMARK 3 L13: 1.6861 L23: 1.3430 REMARK 3 S TENSOR REMARK 3 S11: 0.1901 S12: -0.3617 S13: -0.4014 REMARK 3 S21: 0.5155 S22: -0.1202 S23: 0.2195 REMARK 3 S31: 0.3444 S32: -0.5600 S33: -0.0857 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 286 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5374 19.1230 45.1352 REMARK 3 T TENSOR REMARK 3 T11: 0.1153 T22: 0.0957 REMARK 3 T33: 0.0605 T12: -0.0132 REMARK 3 T13: 0.0036 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 7.9406 L22: 5.4273 REMARK 3 L33: 2.1249 L12: -3.9573 REMARK 3 L13: -0.9657 L23: 1.2592 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.1282 S13: 0.0997 REMARK 3 S21: -0.0081 S22: 0.0064 S23: -0.1596 REMARK 3 S31: -0.1893 S32: -0.0106 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.4246 -12.2052 35.0658 REMARK 3 T TENSOR REMARK 3 T11: 0.1686 T22: 0.1656 REMARK 3 T33: 0.1494 T12: 0.0187 REMARK 3 T13: 0.0194 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 6.4849 L22: 4.0008 REMARK 3 L33: 6.6510 L12: 4.2647 REMARK 3 L13: -3.8405 L23: -4.5936 REMARK 3 S TENSOR REMARK 3 S11: 0.2729 S12: -0.0454 S13: 0.3474 REMARK 3 S21: 0.6273 S22: -0.0984 S23: 0.0853 REMARK 3 S31: -0.4261 S32: -0.0480 S33: -0.0911 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 242 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.2157 -24.1724 28.7539 REMARK 3 T TENSOR REMARK 3 T11: 0.1382 T22: 0.1474 REMARK 3 T33: 0.1429 T12: 0.0099 REMARK 3 T13: -0.0087 T23: 0.0271 REMARK 3 L TENSOR REMARK 3 L11: 3.8134 L22: 5.8939 REMARK 3 L33: 2.0963 L12: 1.9282 REMARK 3 L13: -0.9365 L23: -0.8138 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.0493 S13: -0.4250 REMARK 3 S21: -0.0499 S22: -0.2040 S23: -0.8867 REMARK 3 S31: 0.2405 S32: 0.1462 S33: 0.1562 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 258 THROUGH 271 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4568 -18.9554 24.6766 REMARK 3 T TENSOR REMARK 3 T11: 0.1746 T22: 0.2043 REMARK 3 T33: 0.1908 T12: -0.0194 REMARK 3 T13: 0.0384 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 6.8139 L22: 4.8271 REMARK 3 L33: 7.6391 L12: -4.3533 REMARK 3 L13: 2.4991 L23: -4.7039 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.3611 S13: 0.0377 REMARK 3 S21: -0.2616 S22: -0.2414 S23: -0.4925 REMARK 3 S31: -0.1114 S32: -0.1100 S33: 0.1202 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 272 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3254 -15.9651 24.8276 REMARK 3 T TENSOR REMARK 3 T11: 0.1114 T22: 0.1781 REMARK 3 T33: 0.1096 T12: -0.0104 REMARK 3 T13: 0.0005 T23: 0.0215 REMARK 3 L TENSOR REMARK 3 L11: 3.9106 L22: 8.3766 REMARK 3 L33: 3.9685 L12: -0.5720 REMARK 3 L13: 0.5116 L23: 2.9579 REMARK 3 S TENSOR REMARK 3 S11: 0.0315 S12: 0.0957 S13: 0.1767 REMARK 3 S21: -0.2269 S22: -0.0589 S23: 0.0049 REMARK 3 S31: -0.0755 S32: -0.1131 S33: 0.0060 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 287 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4988 -19.2270 31.7064 REMARK 3 T TENSOR REMARK 3 T11: 0.1260 T22: 0.1137 REMARK 3 T33: 0.0656 T12: 0.0230 REMARK 3 T13: -0.0067 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 5.8030 L22: 2.6507 REMARK 3 L33: 3.0634 L12: 0.9542 REMARK 3 L13: -0.0420 L23: -0.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.0047 S12: 0.0821 S13: 0.1122 REMARK 3 S21: -0.0228 S22: -0.0314 S23: -0.0325 REMARK 3 S31: 0.1786 S32: 0.1582 S33: -0.0052 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 251 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.0475 13.3759 43.3121 REMARK 3 T TENSOR REMARK 3 T11: 0.1048 T22: 0.1371 REMARK 3 T33: 0.0764 T12: -0.0183 REMARK 3 T13: 0.0140 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 3.1465 L22: 6.8816 REMARK 3 L33: 1.8142 L12: -1.2649 REMARK 3 L13: 0.6912 L23: 0.7682 REMARK 3 S TENSOR REMARK 3 S11: 0.1501 S12: 0.0332 S13: -0.3071 REMARK 3 S21: -0.3187 S22: -0.0294 S23: 0.2568 REMARK 3 S31: 0.0749 S32: -0.1164 S33: -0.1353 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MR1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237419. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97949 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36148 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE, 0.2 M SODIUM REMARK 280 THIOCYANATE, 10 MM COCL2, 0.1 M MES PH 6.5, 30 MG/ML PROTEIN, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.45000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.28500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.78000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.28500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.45000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.78000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 224 REMARK 465 ALA A 225 REMARK 465 GLN A 314 REMARK 465 ALA A 315 REMARK 465 ALA A 316 REMARK 465 VAL A 317 REMARK 465 ALA A 318 REMARK 465 SER A 319 REMARK 465 MET B 224 REMARK 465 ALA B 225 REMARK 465 ASN B 226 REMARK 465 GLY B 313 REMARK 465 GLN B 314 REMARK 465 ALA B 315 REMARK 465 ALA B 316 REMARK 465 VAL B 317 REMARK 465 ALA B 318 REMARK 465 SER B 319 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH12 ARG A 311 O HOH A 503 1.34 REMARK 500 HH12 ARG A 237 O HOH A 501 1.46 REMARK 500 O HOH A 519 O HOH A 592 1.91 REMARK 500 O HOH B 593 O HOH B 594 2.00 REMARK 500 NH1 ARG A 237 O HOH A 501 2.03 REMARK 500 O HOH A 525 O HOH A 588 2.06 REMARK 500 OG1 THR A 268 O HOH A 502 2.09 REMARK 500 NH1 ARG A 311 O HOH A 503 2.12 REMARK 500 ND2 ASN A 226 O HOH A 504 2.12 REMARK 500 O HOH A 546 O HOH A 588 2.15 REMARK 500 O HOH B 536 O HOH B 578 2.15 REMARK 500 OG1 THR B 268 O HOH B 501 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CO CO A 401 O HOH A 504 4556 1.56 REMARK 500 O HOH B 508 O HOH B 568 1655 1.86 REMARK 500 O HOH A 587 O HOH B 551 4556 2.01 REMARK 500 O HOH A 504 O HOH A 554 4456 2.15 REMARK 500 NZ LYS A 284 O HOH B 561 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 282 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 LEU A 282 CB - CG - CD2 ANGL. DEV. = 10.4 DEGREES REMARK 500 ARG A 303 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 303 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU A 306 OE1 - CD - OE2 ANGL. DEV. = -7.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 260 69.73 -104.76 REMARK 500 ASP B 231 76.60 -103.13 REMARK 500 SER B 260 72.90 -103.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 235 NE2 REMARK 620 2 GLU A 307 OE2 89.8 REMARK 620 3 HOH A 533 O 93.2 96.2 REMARK 620 4 HOH A 535 O 177.2 87.4 86.7 REMARK 620 5 HOH A 554 O 92.3 90.0 171.8 88.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 402 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 286 NE2 REMARK 620 2 GLU B 285 OE1 94.9 REMARK 620 3 GLU B 285 OE2 96.7 2.1 REMARK 620 4 SCN B 403 N 92.4 2.9 4.3 REMARK 620 5 SCN B 404 N 94.4 2.8 2.9 2.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B 401 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 235 NE2 REMARK 620 2 GLU B 307 OE2 92.2 REMARK 620 3 HOH B 504 O 73.1 162.2 REMARK 620 4 HOH B 530 O 92.9 95.5 95.3 REMARK 620 5 HOH B 552 O 177.9 85.7 109.0 87.2 REMARK 620 6 HOH B 557 O 89.9 90.2 80.1 173.6 90.2 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SCN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KWC RELATED DB: PDB REMARK 900 N-TERMINAL DOMAIN OF THE SAME PROTEIN DBREF 6MR1 A 226 319 UNP Q8DKB5 Q8DKB5_THEEB 227 320 DBREF 6MR1 B 226 319 UNP Q8DKB5 Q8DKB5_THEEB 227 320 SEQADV 6MR1 MET A 224 UNP Q8DKB5 INITIATING METHIONINE SEQADV 6MR1 ALA A 225 UNP Q8DKB5 EXPRESSION TAG SEQADV 6MR1 MET B 224 UNP Q8DKB5 INITIATING METHIONINE SEQADV 6MR1 ALA B 225 UNP Q8DKB5 EXPRESSION TAG SEQRES 1 A 96 MET ALA ASN THR MET THR THR ASP TYR GLY THR HIS VAL SEQRES 2 A 96 ARG GLN LEU LEU GLN GLN GLY TYR GLN ILE SER LEU GLU SEQRES 3 A 96 TYR ALA ASP ALA ARG ARG TYR ARG THR SER SER TRP GLN SEQRES 4 A 96 SER GLY PRO THR LEU THR GLY GLN GLN GLU SER GLN VAL SEQRES 5 A 96 MET ALA ALA ILE ALA GLN LEU LEU LYS GLU HIS GLU GLY SEQRES 6 A 96 GLU TYR VAL ARG LEU ILE GLY VAL ASP PRO LYS ALA LYS SEQRES 7 A 96 ARG ARG VAL PHE GLU GLU ILE ILE GLN ARG PRO GLY GLN SEQRES 8 A 96 ALA ALA VAL ALA SER SEQRES 1 B 96 MET ALA ASN THR MET THR THR ASP TYR GLY THR HIS VAL SEQRES 2 B 96 ARG GLN LEU LEU GLN GLN GLY TYR GLN ILE SER LEU GLU SEQRES 3 B 96 TYR ALA ASP ALA ARG ARG TYR ARG THR SER SER TRP GLN SEQRES 4 B 96 SER GLY PRO THR LEU THR GLY GLN GLN GLU SER GLN VAL SEQRES 5 B 96 MET ALA ALA ILE ALA GLN LEU LEU LYS GLU HIS GLU GLY SEQRES 6 B 96 GLU TYR VAL ARG LEU ILE GLY VAL ASP PRO LYS ALA LYS SEQRES 7 B 96 ARG ARG VAL PHE GLU GLU ILE ILE GLN ARG PRO GLY GLN SEQRES 8 B 96 ALA ALA VAL ALA SER HET CO A 401 1 HET SO4 A 402 5 HET CL A 403 1 HET CO B 401 1 HET CO B 402 1 HET SCN B 403 3 HET SCN B 404 3 HET SO4 B 405 5 HETNAM CO COBALT (II) ION HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETNAM SCN THIOCYANATE ION FORMUL 3 CO 3(CO 2+) FORMUL 4 SO4 2(O4 S 2-) FORMUL 5 CL CL 1- FORMUL 8 SCN 2(C N S 1-) FORMUL 11 HOH *199(H2 O) HELIX 1 AA1 TYR A 232 GLY A 243 1 12 HELIX 2 AA2 ASP A 252 THR A 258 1 7 HELIX 3 AA3 GLN A 271 HIS A 286 1 16 HELIX 4 AA4 TYR B 232 GLN B 242 1 11 HELIX 5 AA5 ASP B 252 THR B 258 1 7 HELIX 6 AA6 GLN B 271 HIS B 286 1 16 SHEET 1 AA1 5 THR A 227 THR A 229 0 SHEET 2 AA1 5 ARG A 303 PRO A 312 -1 O ARG A 311 N MET A 228 SHEET 3 AA1 5 TYR A 290 VAL A 296 -1 N LEU A 293 O GLU A 307 SHEET 4 AA1 5 GLN A 245 ALA A 251 -1 N SER A 247 O ILE A 294 SHEET 5 AA1 5 GLN A 262 LEU A 267 -1 O GLN A 262 N TYR A 250 SHEET 1 AA2 5 MET B 228 THR B 229 0 SHEET 2 AA2 5 ARG B 302 ARG B 311 -1 O ARG B 311 N MET B 228 SHEET 3 AA2 5 TYR B 290 ASP B 297 -1 N LEU B 293 O GLU B 307 SHEET 4 AA2 5 GLN B 245 ALA B 251 -1 N SER B 247 O ILE B 294 SHEET 5 AA2 5 GLN B 262 LEU B 267 -1 O GLN B 262 N TYR B 250 LINK NE2 HIS A 235 CO CO A 401 1555 1555 2.20 LINK NE2 HIS A 286 CO CO B 402 1555 2555 2.05 LINK OE2 GLU A 307 CO CO A 401 1555 1555 2.10 LINK CO CO A 401 O HOH A 533 1555 4456 1.87 LINK CO CO A 401 O HOH A 535 1555 1555 2.09 LINK CO CO A 401 O HOH A 554 1555 1555 1.85 LINK NE2 HIS B 235 CO CO B 401 1555 1555 2.16 LINK OE1 GLU B 285 CO CO B 402 1555 1555 1.95 LINK OE2 GLU B 285 CO CO B 402 1555 1555 2.69 LINK OE2 GLU B 307 CO CO B 401 1555 1555 2.05 LINK CO CO B 401 O HOH B 504 1555 1555 1.78 LINK CO CO B 401 O HOH B 530 1555 4446 2.05 LINK CO CO B 401 O HOH B 552 1555 1555 2.24 LINK CO CO B 401 O HOH B 557 1555 1555 2.01 LINK CO CO B 402 N SCN B 403 1555 1555 1.92 LINK CO CO B 402 N SCN B 404 1555 1555 1.90 SITE 1 AC1 7 ASN A 226 HIS A 235 GLU A 307 HOH A 504 SITE 2 AC1 7 HOH A 533 HOH A 535 HOH A 554 SITE 1 AC2 5 ARG A 302 ARG A 303 HOH A 535 HOH A 574 SITE 2 AC2 5 HOH A 601 SITE 1 AC3 1 GLY A 269 SITE 1 AC4 6 HIS B 235 GLU B 307 HOH B 504 HOH B 530 SITE 2 AC4 6 HOH B 552 HOH B 557 SITE 1 AC5 4 HIS A 286 GLU B 285 SCN B 403 SCN B 404 SITE 1 AC6 6 LEU A 248 GLU A 249 HIS A 286 GLU B 285 SITE 2 AC6 6 CO B 402 SCN B 404 SITE 1 AC7 4 HIS A 286 GLU B 285 CO B 402 SCN B 403 SITE 1 AC8 5 ARG B 302 ARG B 303 HOH B 540 HOH B 552 SITE 2 AC8 5 HOH B 570 CRYST1 28.900 73.560 76.570 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.034602 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013594 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013060 0.00000