HEADER HYDROLASE 16-OCT-18 6MS2 TITLE CRYSTAL STRUCTURE OF THE GH43 BLXYNB PROTEIN FROM BACILLUS TITLE 2 LICHENIFORMIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 43; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS LICHENIFORMIS (STRAIN ATCC 14580 / DSM SOURCE 3 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / GIBSON SOURCE 4 46); SOURCE 5 ORGANISM_TAXID: 279010; SOURCE 6 STRAIN: ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / SOURCE 7 NRRL NRS-1264 / GIBSON 46; SOURCE 8 GENE: XYNB, BL03023; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS GLYCOSIDE HYDROLASE, GH43, BACILLUS LINCHENIFORMIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.M.ZANPHORLIN,M.A.B.MORAIS,J.A.DIOGO,M.T.MURAKAMI REVDAT 3 11-OCT-23 6MS2 1 REMARK REVDAT 2 01-JAN-20 6MS2 1 REMARK REVDAT 1 17-APR-19 6MS2 0 JRNL AUTH L.M.ZANPHORLIN,M.A.B.DE MORAIS,J.A.DIOGO,M.N.DOMINGUES, JRNL AUTH 2 F.H.M.DE SOUZA,R.RULLER,M.T.MURAKAMI JRNL TITL STRUCTURE-GUIDED DESIGN COMBINED WITH EVOLUTIONARY DIVERSITY JRNL TITL 2 LED TO THE DISCOVERY OF THE XYLOSE-RELEASING EXO-XYLANASE JRNL TITL 3 ACTIVITY IN THE GLYCOSIDE HYDROLASE FAMILY 43. JRNL REF BIOTECHNOL. BIOENG. V. 116 734 2019 JRNL REFN ESSN 1097-0290 JRNL PMID 30556897 JRNL DOI 10.1002/BIT.26899 REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2148 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.31 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 87.8 REMARK 3 NUMBER OF REFLECTIONS : 15356 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.3161 - 6.7506 0.97 1357 157 0.1802 0.1978 REMARK 3 2 6.7506 - 5.3654 0.90 1257 148 0.1854 0.2262 REMARK 3 3 5.3654 - 4.6893 0.92 1280 146 0.1457 0.1771 REMARK 3 4 4.6893 - 4.2615 0.94 1299 159 0.1403 0.1717 REMARK 3 5 4.2615 - 3.9566 0.91 1280 134 0.1505 0.2159 REMARK 3 6 3.9566 - 3.7236 0.91 1270 152 0.1782 0.1977 REMARK 3 7 3.7236 - 3.5374 0.94 1322 132 0.1812 0.2418 REMARK 3 8 3.5374 - 3.3835 0.88 1234 134 0.1917 0.2194 REMARK 3 9 3.3835 - 3.2534 0.88 1202 142 0.2065 0.2899 REMARK 3 10 3.2534 - 3.1412 0.92 1309 148 0.2132 0.2823 REMARK 3 11 3.1412 - 3.0431 0.93 1311 134 0.2116 0.2742 REMARK 3 12 3.0431 - 2.9561 0.92 1277 137 0.2240 0.2643 REMARK 3 13 2.9561 - 2.8784 0.90 1270 136 0.2479 0.3598 REMARK 3 14 2.8784 - 2.8082 0.90 1257 133 0.2554 0.3118 REMARK 3 15 2.8082 - 2.7444 0.87 1203 144 0.2621 0.2861 REMARK 3 16 2.7444 - 2.6860 0.88 1249 134 0.2722 0.3135 REMARK 3 17 2.6860 - 2.6323 0.87 1196 123 0.2656 0.3426 REMARK 3 18 2.6323 - 2.5826 0.80 1127 130 0.3097 0.3250 REMARK 3 19 2.5826 - 2.5365 0.70 982 115 0.3071 0.3631 REMARK 3 20 2.5365 - 2.4935 0.60 822 103 0.3369 0.4072 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4200 REMARK 3 ANGLE : 0.756 5714 REMARK 3 CHIRALITY : 0.046 583 REMARK 3 PLANARITY : 0.004 748 REMARK 3 DIHEDRAL : 17.896 2428 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 55.5152 13.4590 14.2654 REMARK 3 T TENSOR REMARK 3 T11: 0.2121 T22: 0.1602 REMARK 3 T33: 0.1655 T12: 0.0032 REMARK 3 T13: 0.0418 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 4.2376 L22: 4.6175 REMARK 3 L33: 3.6953 L12: -0.7107 REMARK 3 L13: 0.9701 L23: -2.5951 REMARK 3 S TENSOR REMARK 3 S11: 0.0977 S12: 0.0282 S13: -0.2978 REMARK 3 S21: -0.0439 S22: 0.0585 S23: 0.3975 REMARK 3 S31: 0.1037 S32: -0.1347 S33: -0.1481 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 146 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.9253 13.3337 21.1811 REMARK 3 T TENSOR REMARK 3 T11: 0.1872 T22: 0.2894 REMARK 3 T33: 0.2872 T12: -0.0314 REMARK 3 T13: 0.0369 T23: -0.0585 REMARK 3 L TENSOR REMARK 3 L11: 2.2094 L22: 3.4509 REMARK 3 L33: 3.0508 L12: -0.2062 REMARK 3 L13: 0.8512 L23: -1.1701 REMARK 3 S TENSOR REMARK 3 S11: 0.1441 S12: -0.1450 S13: -0.0447 REMARK 3 S21: 0.1755 S22: 0.0140 S23: 0.6084 REMARK 3 S31: 0.0032 S32: -0.4591 S33: -0.1320 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 147 THROUGH 186 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.0788 17.5691 32.6195 REMARK 3 T TENSOR REMARK 3 T11: 0.3788 T22: 0.4513 REMARK 3 T33: 0.3871 T12: 0.0199 REMARK 3 T13: 0.1013 T23: -0.1195 REMARK 3 L TENSOR REMARK 3 L11: 4.4270 L22: 4.6528 REMARK 3 L33: 4.2654 L12: 1.7811 REMARK 3 L13: 1.1489 L23: 1.9452 REMARK 3 S TENSOR REMARK 3 S11: 0.4678 S12: -0.8036 S13: 0.8129 REMARK 3 S21: 0.3148 S22: -0.4444 S23: 0.7048 REMARK 3 S31: -0.0433 S32: -0.4575 S33: -0.0237 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 187 THROUGH 263 ) REMARK 3 ORIGIN FOR THE GROUP (A): 59.2811 17.8149 33.2783 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.4273 REMARK 3 T33: 0.2085 T12: -0.0522 REMARK 3 T13: 0.0027 T23: -0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.3066 L22: 1.3184 REMARK 3 L33: 2.0494 L12: 0.4628 REMARK 3 L13: -1.1003 L23: 0.5815 REMARK 3 S TENSOR REMARK 3 S11: 0.3268 S12: -0.7776 S13: 0.2000 REMARK 3 S21: 0.5137 S22: -0.3037 S23: 0.1767 REMARK 3 S31: -0.1488 S32: -0.0699 S33: -0.0515 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 264 THROUGH 447 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.4466 21.8243 1.9940 REMARK 3 T TENSOR REMARK 3 T11: 0.1785 T22: 0.1734 REMARK 3 T33: 0.2805 T12: 0.0413 REMARK 3 T13: 0.0120 T23: -0.0541 REMARK 3 L TENSOR REMARK 3 L11: 1.3881 L22: 0.8127 REMARK 3 L33: 1.7925 L12: 0.3075 REMARK 3 L13: -0.4741 L23: -0.3132 REMARK 3 S TENSOR REMARK 3 S11: 0.0657 S12: 0.1163 S13: 0.0118 REMARK 3 S21: -0.0478 S22: -0.0778 S23: 0.0015 REMARK 3 S31: 0.0606 S32: -0.0517 S33: -0.0009 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 448 THROUGH 515 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.1971 27.1024 -3.2728 REMARK 3 T TENSOR REMARK 3 T11: 0.2239 T22: 0.1983 REMARK 3 T33: 0.2710 T12: 0.0676 REMARK 3 T13: 0.0139 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.9254 L22: 0.9319 REMARK 3 L33: 1.9684 L12: -0.0044 REMARK 3 L13: -0.7657 L23: 0.2989 REMARK 3 S TENSOR REMARK 3 S11: 0.1090 S12: 0.2597 S13: 0.0731 REMARK 3 S21: -0.0232 S22: -0.1761 S23: 0.1570 REMARK 3 S31: -0.1480 S32: -0.1916 S33: 0.0364 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MS2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000235996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LNLS REMARK 200 BEAMLINE : W01B-MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.459 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 40.410 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 2.800 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.810 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1YRZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 36% (V/V) 2-METHYL-2,4-PENTANEDIOL, 5% REMARK 280 (W/V) POLYETHELYNE GLYCOL 8,000 AND 0.1 M SODIUM CACODYLATE PH REMARK 280 6.0, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.42900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.95100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.42900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.95100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 152.85800 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 SER A -12 REMARK 465 SER A -11 REMARK 465 GLY A -10 REMARK 465 LEU A -9 REMARK 465 VAL A -8 REMARK 465 PRO A -7 REMARK 465 ARG A -6 REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 ALA A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 163 C - N - CA ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 15 95.09 -52.68 REMARK 500 HIS A 16 72.36 -150.86 REMARK 500 PHE A 35 -117.80 61.74 REMARK 500 ILE A 41 97.29 65.63 REMARK 500 LEU A 49 -5.40 69.89 REMARK 500 GLU A 61 -27.96 68.44 REMARK 500 ASN A 103 51.37 83.28 REMARK 500 ASP A 136 64.21 60.22 REMARK 500 ALA A 154 -137.33 53.25 REMARK 500 GLU A 163 -54.66 106.52 REMARK 500 SER A 168 35.27 -99.55 REMARK 500 GLU A 170 92.22 17.35 REMARK 500 ARG A 180 136.73 86.30 REMARK 500 GLU A 184 -158.97 -149.75 REMARK 500 ASP A 313 109.84 -59.69 REMARK 500 ARG A 333 -171.97 63.18 REMARK 500 ARG A 345 84.72 -155.52 REMARK 500 GLU A 412 77.74 -150.91 REMARK 500 LYS A 448 -114.03 52.21 REMARK 500 THR A 486 -115.66 -105.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 178 GLY A 179 -146.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 319 O REMARK 620 2 ASP A 319 OD1 71.6 REMARK 620 3 GLY A 347 O 74.4 134.3 REMARK 620 4 ASP A 508 O 61.1 70.7 66.5 REMARK 620 5 ASP A 508 OD2 122.0 98.6 74.8 61.7 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 601 DBREF 6MS2 A 1 515 UNP Q65MB6 Q65MB6_BACLD 1 515 SEQADV 6MS2 MET A -22 UNP Q65MB6 INITIATING METHIONINE SEQADV 6MS2 GLY A -21 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A -20 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A -19 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -18 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -17 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -16 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -15 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -14 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -13 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A -12 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A -11 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 GLY A -10 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 LEU A -9 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 VAL A -8 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 PRO A -7 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 ARG A -6 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 GLY A -5 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A -4 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 HIS A -3 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 MET A -2 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 ALA A -1 UNP Q65MB6 EXPRESSION TAG SEQADV 6MS2 SER A 0 UNP Q65MB6 EXPRESSION TAG SEQRES 1 A 538 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 538 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET SER GLY SEQRES 3 A 538 GLU HIS THR TYR THR ASN PRO VAL LEU THR GLY PHE HIS SEQRES 4 A 538 PRO ASP PRO SER ILE ILE ARG VAL GLY GLU ASP TYR TYR SEQRES 5 A 538 MET VAL ASN SER THR PHE GLN TYR PHE PRO ALA ILE VAL SEQRES 6 A 538 ILE SER HIS SER LYS ASP LEU VAL HIS TRP LYS ILE ILE SEQRES 7 A 538 GLY HIS GLY ILE THR GLU ASN GLU GLY LEU ASP LEU SER SEQRES 8 A 538 ASP ILE ASN ASP SER HIS GLY ILE TRP ALA PRO ASP ILE SEQRES 9 A 538 SER TYR HIS ASN GLY THR PHE TYR ILE PHE ALA THR HIS SEQRES 10 A 538 ARG LEU ASN GLY PRO THR VAL ILE ASN GLY ARG LYS LEU SEQRES 11 A 538 ILE ARG ARG GLN ILE MET ILE LYS SER SER ARG PRO GLU SEQRES 12 A 538 GLY PRO TYR SER LYS PRO VAL PHE ILE ASP GLU GLY SER SEQRES 13 A 538 GLY ILE ASP PRO SER HIS PHE VAL ASP GLY ASP GLY LYS SEQRES 14 A 538 HIS TYR MET LEU LEU SER PRO ALA CYS THR LEU PHE PRO SEQRES 15 A 538 LEU ASN GLU GLU CYS THR ASP ILE SER GLY GLU PRO VAL SEQRES 16 A 538 GLN ILE TRP GLU GLY THR GLY ARG ARG ALA PRO GLU GLY SEQRES 17 A 538 PRO HIS LEU LEU LYS LYS ASP GLY TYR TYR TYR ALA ILE SEQRES 18 A 538 LEU ALA GLU GLY GLY THR GLY TYR SER HIS SER ILE THR SEQRES 19 A 538 THR ALA ARG SER THR HIS LEU TYR GLY PRO TYR GLU PRO SEQRES 20 A 538 CYS PRO TYR ASN PRO ILE LEU THR GLN THR ASP PRO ASP SEQRES 21 A 538 ALA PRO ILE GLN ARG ALA GLY HIS GLY LYS LEU VAL GLU SEQRES 22 A 538 THR GLN ASN GLY GLU TRP TRP ALA VAL TYR LEU CYS GLY SEQRES 23 A 538 ARG PRO ASN GLN GLY SER TYR THR THR VAL GLY ARG GLU SEQRES 24 A 538 THR ALA LEU ASP PRO VAL GLU TRP THR ASP ASP GLY TRP SEQRES 25 A 538 PHE VAL ILE ASN ASN LEU LYS GLY PRO SER LEU VAL GLN SEQRES 26 A 538 ARG ALA PRO ASN LEU PRO GLN VAL LYS TRP ASP GLU LYS SEQRES 27 A 538 ASN PHE ASP ASP PHE ASP GLU ASP THR LEU GLY LEU ASP SEQRES 28 A 538 TRP GLN PHE VAL ARG ASN PRO ASP HIS SER SER TRP SER SEQRES 29 A 538 LEU ILE GLU ARG PRO GLY TYR LEU ARG LEU TRP THR GLY SEQRES 30 A 538 ASP TRP ASP LEU HIS ASP ILE ARG ALA LYS ASN THR VAL SEQRES 31 A 538 VAL ARG ARG GLU LYS HIS HIS LEU TYR SER ALA GLY VAL SEQRES 32 A 538 LYS LEU ASP PHE SER PRO SER ALA SER GLY GLU GLN ALA SEQRES 33 A 538 GLY ILE VAL CYS TYR TYR SER THR ASN ASN TYR LEU LYS SEQRES 34 A 538 CYS CYS LEU ILE TYR GLU GLU GLY LEU LYS ILE LYS VAL SEQRES 35 A 538 VAL GLU ASN ARG SER GLY CYS GLN LYS THR LEU GLY LYS SEQRES 36 A 538 LYS HIS ALA GLU ALA GLY PRO LEU PHE LEU LYS ALA VAL SEQRES 37 A 538 ILE ASN LYS GLN LYS ARG ASP PHE TYR TYR SER TYR GLU SEQRES 38 A 538 GLY LYS HIS TRP HIS HIS ALA GLY GLY THR GLU ASP ALA SEQRES 39 A 538 SER PHE LEU SER ASP GLU GLY SER ARG ASP ALA LYS GLY SEQRES 40 A 538 HIS THR GLY THR MET VAL GLY ILE PHE ALA ASN ASN GLY SEQRES 41 A 538 GLY SER GLY ARG LYS ALA ALA ALA ASP PHE ASP TRP PHE SEQRES 42 A 538 ARG TYR ILE ALA TYR HET CA A 601 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ FORMUL 3 HOH *58(H2 O) HELIX 1 AA1 ASN A 294 LYS A 296 5 3 SHEET 1 AA1 2 THR A 6 THR A 8 0 SHEET 2 AA1 2 VAL A 301 ARG A 303 -1 O GLN A 302 N TYR A 7 SHEET 1 AA2 4 SER A 20 VAL A 24 0 SHEET 2 AA2 4 ASP A 27 ASN A 32 -1 O ASP A 27 N VAL A 24 SHEET 3 AA2 4 ALA A 40 SER A 46 -1 O SER A 44 N MET A 30 SHEET 4 AA2 4 TRP A 52 ILE A 59 -1 O GLY A 56 N ILE A 43 SHEET 1 AA3 8 TYR A 37 PHE A 38 0 SHEET 2 AA3 8 GLN A 330 VAL A 332 -1 O PHE A 331 N PHE A 38 SHEET 3 AA3 8 VAL A 367 ARG A 370 -1 O VAL A 368 N GLN A 330 SHEET 4 AA3 8 MET A 489 ASN A 495 -1 O VAL A 490 N ARG A 369 SHEET 5 AA3 8 GLN A 392 SER A 400 -1 N TYR A 398 O MET A 489 SHEET 6 AA3 8 ASN A 403 TYR A 411 -1 O CYS A 407 N ILE A 395 SHEET 7 AA3 8 LEU A 415 ARG A 423 -1 O ASN A 422 N TYR A 404 SHEET 8 AA3 8 CYS A 426 HIS A 434 -1 O LYS A 428 N GLU A 421 SHEET 1 AA4 4 GLY A 75 HIS A 84 0 SHEET 2 AA4 4 THR A 87 VAL A 101 -1 O THR A 93 N TRP A 77 SHEET 3 AA4 4 LYS A 106 SER A 116 -1 O ILE A 112 N ALA A 92 SHEET 4 AA4 4 VAL A 127 ILE A 129 -1 O ILE A 129 N GLN A 111 SHEET 1 AA5 4 SER A 138 VAL A 141 0 SHEET 2 AA5 4 HIS A 147 LEU A 151 -1 O TYR A 148 N PHE A 140 SHEET 3 AA5 4 CYS A 155 PRO A 159 -1 O PHE A 158 N MET A 149 SHEET 4 AA5 4 VAL A 172 TRP A 175 -1 O VAL A 172 N LEU A 157 SHEET 1 AA6 4 GLU A 184 LYS A 191 0 SHEET 2 AA6 4 TYR A 194 GLU A 201 -1 O TYR A 196 N LEU A 189 SHEET 3 AA6 4 SER A 209 SER A 215 -1 O SER A 215 N TYR A 195 SHEET 4 AA6 4 GLU A 223 PRO A 224 -1 O GLU A 223 N ARG A 214 SHEET 1 AA7 4 GLU A 184 LYS A 191 0 SHEET 2 AA7 4 TYR A 194 GLU A 201 -1 O TYR A 196 N LEU A 189 SHEET 3 AA7 4 SER A 209 SER A 215 -1 O SER A 215 N TYR A 195 SHEET 4 AA7 4 LEU A 231 THR A 232 -1 O LEU A 231 N ILE A 210 SHEET 1 AA8 4 GLN A 241 GLU A 250 0 SHEET 2 AA8 4 TRP A 256 GLY A 263 -1 O LEU A 261 N GLY A 244 SHEET 3 AA8 4 GLU A 276 TRP A 284 -1 O VAL A 282 N TRP A 256 SHEET 4 AA8 4 PHE A 290 ILE A 292 -1 O VAL A 291 N GLU A 283 SHEET 1 AA9 4 PHE A 317 ASP A 318 0 SHEET 2 AA9 4 ALA A 504 ILE A 513 -1 O PHE A 510 N ASP A 318 SHEET 3 AA9 4 LEU A 349 TRP A 352 -1 N LEU A 351 O ALA A 505 SHEET 4 AA9 4 TRP A 340 SER A 341 -1 N SER A 341 O ARG A 350 SHEET 1 AB1 6 PHE A 317 ASP A 318 0 SHEET 2 AB1 6 ALA A 504 ILE A 513 -1 O PHE A 510 N ASP A 318 SHEET 3 AB1 6 LEU A 375 ASP A 383 -1 N ASP A 383 O ASP A 506 SHEET 4 AB1 6 LEU A 440 ASN A 447 -1 O ALA A 444 N ALA A 378 SHEET 5 AB1 6 LYS A 450 SER A 456 -1 O LYS A 450 N ASN A 447 SHEET 6 AB1 6 HIS A 463 THR A 468 -1 O THR A 468 N ARG A 451 LINK O ASP A 319 CA CA A 601 1555 1555 2.43 LINK OD1 ASP A 319 CA CA A 601 1555 1555 2.39 LINK O GLY A 347 CA CA A 601 1555 1555 2.42 LINK O ASP A 508 CA CA A 601 1555 1555 3.12 LINK OD2 ASP A 508 CA CA A 601 1555 1555 2.47 CISPEP 1 ASN A 9 PRO A 10 0 -7.08 CISPEP 2 PHE A 38 PRO A 39 0 -2.54 CISPEP 3 GLY A 121 PRO A 122 0 0.47 CISPEP 4 SER A 152 PRO A 153 0 -4.23 CISPEP 5 GLU A 162 GLU A 163 0 12.62 CISPEP 6 GLY A 220 PRO A 221 0 -1.61 CISPEP 7 ASN A 228 PRO A 229 0 1.25 CISPEP 8 GLY A 497 GLY A 498 0 -5.92 SITE 1 AC1 3 ASP A 319 GLY A 347 ASP A 508 CRYST1 152.858 41.902 71.805 90.00 91.70 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006542 0.000000 0.000194 0.00000 SCALE2 0.000000 0.023865 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013933 0.00000