HEADER CELL ADHESION 16-OCT-18 6MSL TITLE INTEGRIN ALPHAVBETA3 ECTODOMAIN BOUND TO EETI-II 2.5D COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-V; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VITRONECTIN RECEPTOR,VITRONECTIN RECEPTOR SUBUNIT ALPHA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INTEGRIN BETA-3; COMPND 8 CHAIN: B; COMPND 9 SYNONYM: PLATELET MEMBRANE GLYCOPROTEIN IIIA,GPIIIA; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: CYSTINE KNOT PROTEIN 2.5D; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGAV, MSK8, VNRA, VTNR; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ITGB3, GP3A; SOURCE 13 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ECBALLIUM ELATERIUM; SOURCE 18 ORGANISM_TAXID: 3679 KEYWDS HYBRID DOMAIN, PSI, EGF REPEATS, BETA TAIL, CALF, THIGH, BETA KEYWDS 2 PROPELLER, RGD MOTIF, FIBRONECTIN, VITRONECTIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.F.VAN AGTHOVEN,M.A.ARNAOUT REVDAT 6 11-OCT-23 6MSL 1 HETSYN LINK REVDAT 5 29-JUL-20 6MSL 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 12-FEB-20 6MSL 1 JRNL REVDAT 3 18-DEC-19 6MSL 1 REMARK REVDAT 2 13-NOV-19 6MSL 1 LINK REVDAT 1 23-OCT-19 6MSL 0 JRNL AUTH J.F.VAN AGTHOVEN,H.SHAMS,F.V.COCHRAN,J.L.ALONSO, JRNL AUTH 2 J.R.KINTZING,K.GARAKANI,B.D.ADAIR,J.P.XIONG,M.R.K.MOFRAD, JRNL AUTH 3 J.R.COCHRAN,M.A.ARNAOUT JRNL TITL STRUCTURAL BASIS OF THE DIFFERENTIAL BINDING OF ENGINEERED JRNL TITL 2 KNOTTINS TO INTEGRINS ALPHA V BETA 3 AND ALPHA 5 BETA 1. JRNL REF STRUCTURE V. 27 1443 2019 JRNL REFN ISSN 0969-2126 JRNL PMID 31353240 JRNL DOI 10.1016/J.STR.2019.06.011 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 51919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 2599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2120 - 8.2696 0.99 2937 164 0.2038 0.2147 REMARK 3 2 8.2696 - 6.5688 1.00 2794 175 0.2190 0.2475 REMARK 3 3 6.5688 - 5.7399 1.00 2765 157 0.2228 0.2503 REMARK 3 4 5.7399 - 5.2157 1.00 2752 151 0.2048 0.2610 REMARK 3 5 5.2157 - 4.8422 1.00 2786 122 0.1868 0.2281 REMARK 3 6 4.8422 - 4.5570 1.00 2738 150 0.1761 0.2262 REMARK 3 7 4.5570 - 4.3289 1.00 2710 153 0.1870 0.2205 REMARK 3 8 4.3289 - 4.1406 1.00 2734 153 0.2019 0.2518 REMARK 3 9 4.1406 - 3.9812 1.00 2731 151 0.2184 0.2785 REMARK 3 10 3.9812 - 3.8439 1.00 2749 111 0.2364 0.3293 REMARK 3 11 3.8439 - 3.7238 1.00 2678 156 0.2425 0.2991 REMARK 3 12 3.7238 - 3.6173 1.00 2698 133 0.2366 0.3215 REMARK 3 13 3.6173 - 3.5221 1.00 2724 156 0.2558 0.3219 REMARK 3 14 3.5221 - 3.4362 1.00 2720 119 0.2595 0.3412 REMARK 3 15 3.4362 - 3.3581 0.99 2660 144 0.2809 0.3285 REMARK 3 16 3.3581 - 3.2867 0.95 2614 125 0.2900 0.3177 REMARK 3 17 3.2867 - 3.2210 0.86 2311 123 0.2902 0.3555 REMARK 3 18 3.2210 - 3.1602 0.69 1859 90 0.3012 0.3250 REMARK 3 19 3.1602 - 3.1040 0.50 1360 66 0.2905 0.2953 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.300 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.900 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 62.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MSL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237496. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54885 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.20 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3IJE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.5, 12% REMARK 280 PEG4000, 800 MM NACL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 203.93067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 101.96533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 101.96533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 203.93067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 76570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 43.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 836 REMARK 465 SER A 837 REMARK 465 LEU A 838 REMARK 465 GLN A 839 REMARK 465 THR A 840 REMARK 465 THR A 841 REMARK 465 GLU A 842 REMARK 465 LYS A 843 REMARK 465 ASN A 844 REMARK 465 ASP A 845 REMARK 465 THR A 846 REMARK 465 VAL A 847 REMARK 465 ALA A 848 REMARK 465 GLY A 849 REMARK 465 GLN A 850 REMARK 465 GLY A 851 REMARK 465 GLU A 852 REMARK 465 ARG A 853 REMARK 465 ASP A 854 REMARK 465 HIS A 855 REMARK 465 LEU A 856 REMARK 465 ILE A 857 REMARK 465 THR A 858 REMARK 465 LYS A 859 REMARK 465 ARG A 860 REMARK 465 ASP A 861 REMARK 465 LEU A 862 REMARK 465 ALA A 863 REMARK 465 LEU A 864 REMARK 465 SER A 865 REMARK 465 GLU A 866 REMARK 465 GLY A 867 REMARK 465 PRO A 957 REMARK 465 ALA A 958 REMARK 465 PRO A 959 REMARK 465 MET A 960 REMARK 465 PRO A 961 REMARK 465 VAL A 962 REMARK 465 PRO A 963 REMARK 465 VAL A 964 REMARK 465 TRP A 965 REMARK 465 VAL A 966 REMARK 465 ILE A 967 REMARK 465 PRO B 691 REMARK 465 ASP B 692 REMARK 465 ILE B 693 REMARK 465 LEU B 694 REMARK 465 VAL B 695 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 874 SG CYS A 879 1.62 REMARK 500 O CYS A 596 OE1 GLU A 636 2.03 REMARK 500 OD1 ASP A 230 OD1 ASN A 232 2.06 REMARK 500 OD1 ASP A 415 OD1 ASN A 417 2.13 REMARK 500 NH2 ARG A 510 O THR A 553 2.14 REMARK 500 OG SER A 919 OD1 ASN A 950 2.18 REMARK 500 OD2 ASP B 233 NZ LYS B 302 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 27 73.40 -115.67 REMARK 500 SER A 63 -178.56 -170.48 REMARK 500 THR A 64 -5.79 66.13 REMARK 500 ASP A 84 78.23 -163.69 REMARK 500 ARG A 143 36.86 -96.76 REMARK 500 ASP A 148 179.57 175.40 REMARK 500 ALA A 213 -167.55 -122.86 REMARK 500 ARG A 339 66.10 60.44 REMARK 500 PRO A 451 126.41 -34.42 REMARK 500 THR A 460 49.70 -81.68 REMARK 500 LYS A 469 70.65 56.68 REMARK 500 LEU A 487 135.95 -171.09 REMARK 500 LYS A 503 -161.74 -79.15 REMARK 500 GLN A 504 -6.74 75.64 REMARK 500 MET A 533 83.31 -68.11 REMARK 500 ARG A 543 -177.77 -64.81 REMARK 500 PHE A 548 -81.98 -95.78 REMARK 500 ARG A 549 -47.40 -148.55 REMARK 500 ASP A 570 -1.73 63.76 REMARK 500 PHE A 581 79.67 -101.93 REMARK 500 ASP A 613 -6.21 74.67 REMARK 500 LYS A 615 -2.13 63.88 REMARK 500 ARG A 665 33.17 -91.76 REMARK 500 LEU A 666 128.58 -39.86 REMARK 500 GLN A 675 -3.16 68.33 REMARK 500 THR A 709 -10.24 74.95 REMARK 500 LYS A 834 -167.25 -79.49 REMARK 500 CYS A 874 -7.60 70.99 REMARK 500 PRO A 937 76.32 -69.50 REMARK 500 PRO B 51 -172.17 -66.16 REMARK 500 GLU B 52 -12.49 -49.19 REMARK 500 PHE B 56 89.50 -151.13 REMARK 500 SER B 78 -63.21 -120.25 REMARK 500 GLN B 79 -179.39 -176.83 REMARK 500 VAL B 157 -67.79 -120.83 REMARK 500 CYS B 177 48.07 -93.56 REMARK 500 MET B 180 -5.83 67.53 REMARK 500 VAL B 193 -62.33 -96.30 REMARK 500 ASP B 241 61.90 61.98 REMARK 500 LEU B 258 -3.02 81.49 REMARK 500 GLU B 378 50.29 -109.98 REMARK 500 ALA B 436 55.73 -93.74 REMARK 500 CYS B 448 99.31 -54.18 REMARK 500 ASN B 449 174.62 175.28 REMARK 500 ASN B 452 60.04 63.72 REMARK 500 PHE B 455 -157.14 -160.31 REMARK 500 GLU B 456 29.90 84.82 REMARK 500 CYS B 457 -63.89 -91.18 REMARK 500 GLU B 475 -177.60 -66.36 REMARK 500 PRO B 480 -27.24 -33.25 REMARK 500 REMARK 500 THIS ENTRY HAS 70 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 450 PRO A 451 -127.44 REMARK 500 ARG B 479 PRO B 480 -132.01 REMARK 500 GLN B 497 ARG B 498 -130.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1025 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 230 OD1 REMARK 620 2 ASN A 232 OD1 56.4 REMARK 620 3 ASN A 232 ND2 110.2 54.7 REMARK 620 4 ASP A 234 OD1 79.5 75.2 74.1 REMARK 620 5 ILE A 236 O 80.1 136.1 160.1 91.9 REMARK 620 6 ASP A 238 OD1 147.6 114.5 75.0 131.0 105.7 REMARK 620 7 ASP A 238 OD2 93.1 63.9 66.7 134.6 131.3 58.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1026 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 284 OD2 REMARK 620 2 ASN A 286 OD1 94.1 REMARK 620 3 ASP A 288 OD1 62.8 67.0 REMARK 620 4 TYR A 290 O 65.0 159.1 100.7 REMARK 620 5 ASP A 292 OD1 130.5 124.6 155.0 73.7 REMARK 620 6 ASP A 292 OD2 110.4 86.6 151.3 100.7 51.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1027 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 349 OD1 REMARK 620 2 ASP A 351 OD1 72.4 REMARK 620 3 ASP A 353 OD1 58.9 78.4 REMARK 620 4 ASP A 353 OD2 109.8 95.3 51.0 REMARK 620 5 PHE A 355 O 56.9 129.2 76.7 102.1 REMARK 620 6 ASP A 357 OD1 116.1 118.4 161.4 129.1 85.8 REMARK 620 7 ASP A 357 OD2 87.3 65.5 136.9 149.7 108.2 54.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1028 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 413 OD1 REMARK 620 2 ASP A 415 OD1 53.9 REMARK 620 3 ASN A 417 OD1 62.3 52.1 REMARK 620 4 TYR A 419 O 65.8 117.1 86.8 REMARK 620 5 ASP A 421 OD1 136.1 108.2 143.7 127.9 REMARK 620 6 ASP A 421 OD2 80.4 76.2 127.2 111.6 55.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1029 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 596 O REMARK 620 2 ASP A 599 OD1 72.9 REMARK 620 3 ASP A 599 OD2 125.6 57.8 REMARK 620 4 VAL A 601 O 72.1 79.6 77.3 REMARK 620 5 GLU A 636 OE1 54.2 125.1 172.0 95.6 REMARK 620 6 GLU A 636 OE2 111.4 143.1 121.5 137.3 61.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 708 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 121 OG REMARK 620 2 SER B 123 OG 84.0 REMARK 620 3 GLU B 220 OE1 63.2 147.0 REMARK 620 4 HOH B 801 O 70.2 62.7 106.0 REMARK 620 5 HOH B 802 O 168.2 90.9 122.0 97.9 REMARK 620 6 ASP C 8 OD1 87.7 84.3 90.5 141.3 102.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 709 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 123 O REMARK 620 2 ASP B 126 OD1 60.1 REMARK 620 3 ASP B 127 OD1 85.1 56.6 REMARK 620 4 ASP B 251 OD1 108.1 148.4 95.1 REMARK 620 5 ASP B 251 OD2 65.6 97.7 62.2 52.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 710 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 158 OD2 REMARK 620 2 ASN B 215 ND2 94.0 REMARK 620 3 ASP B 217 O 145.7 120.2 REMARK 620 4 ASP B 217 OD1 93.9 141.6 61.7 REMARK 620 5 PRO B 219 O 77.6 132.5 77.0 85.9 REMARK 620 6 GLU B 220 OE2 108.2 69.9 83.5 141.1 68.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3IJE RELATED DB: PDB REMARK 900 RELATED ID: 4MMX RELATED DB: PDB REMARK 900 RELATED ID: 4MMZ RELATED DB: PDB REMARK 900 RELATED ID: 4MMY RELATED DB: PDB REMARK 900 RELATED ID: 4G1M RELATED DB: PDB REMARK 900 RELATED ID: 4G1E RELATED DB: PDB DBREF 6MSL A 1 967 UNP P06756 ITAV_HUMAN 31 997 DBREF 6MSL B 1 695 UNP P05106 ITB3_HUMAN 27 721 DBREF 6MSL C 2 33 PDB 6MSL 6MSL 2 33 SEQRES 1 A 967 PHE ASN LEU ASP VAL ASP SER PRO ALA GLU TYR SER GLY SEQRES 2 A 967 PRO GLU GLY SER TYR PHE GLY PHE ALA VAL ASP PHE PHE SEQRES 3 A 967 VAL PRO SER ALA SER SER ARG MET PHE LEU LEU VAL GLY SEQRES 4 A 967 ALA PRO LYS ALA ASN THR THR GLN PRO GLY ILE VAL GLU SEQRES 5 A 967 GLY GLY GLN VAL LEU LYS CYS ASP TRP SER SER THR ARG SEQRES 6 A 967 ARG CYS GLN PRO ILE GLU PHE ASP ALA THR GLY ASN ARG SEQRES 7 A 967 ASP TYR ALA LYS ASP ASP PRO LEU GLU PHE LYS SER HIS SEQRES 8 A 967 GLN TRP PHE GLY ALA SER VAL ARG SER LYS GLN ASP LYS SEQRES 9 A 967 ILE LEU ALA CYS ALA PRO LEU TYR HIS TRP ARG THR GLU SEQRES 10 A 967 MET LYS GLN GLU ARG GLU PRO VAL GLY THR CYS PHE LEU SEQRES 11 A 967 GLN ASP GLY THR LYS THR VAL GLU TYR ALA PRO CYS ARG SEQRES 12 A 967 SER GLN ASP ILE ASP ALA ASP GLY GLN GLY PHE CYS GLN SEQRES 13 A 967 GLY GLY PHE SER ILE ASP PHE THR LYS ALA ASP ARG VAL SEQRES 14 A 967 LEU LEU GLY GLY PRO GLY SER PHE TYR TRP GLN GLY GLN SEQRES 15 A 967 LEU ILE SER ASP GLN VAL ALA GLU ILE VAL SER LYS TYR SEQRES 16 A 967 ASP PRO ASN VAL TYR SER ILE LYS TYR ASN ASN GLN LEU SEQRES 17 A 967 ALA THR ARG THR ALA GLN ALA ILE PHE ASP ASP SER TYR SEQRES 18 A 967 LEU GLY TYR SER VAL ALA VAL GLY ASP PHE ASN GLY ASP SEQRES 19 A 967 GLY ILE ASP ASP PHE VAL SER GLY VAL PRO ARG ALA ALA SEQRES 20 A 967 ARG THR LEU GLY MET VAL TYR ILE TYR ASP GLY LYS ASN SEQRES 21 A 967 MET SER SER LEU TYR ASN PHE THR GLY GLU GLN MET ALA SEQRES 22 A 967 ALA TYR PHE GLY PHE SER VAL ALA ALA THR ASP ILE ASN SEQRES 23 A 967 GLY ASP ASP TYR ALA ASP VAL PHE ILE GLY ALA PRO LEU SEQRES 24 A 967 PHE MET ASP ARG GLY SER ASP GLY LYS LEU GLN GLU VAL SEQRES 25 A 967 GLY GLN VAL SER VAL SER LEU GLN ARG ALA SER GLY ASP SEQRES 26 A 967 PHE GLN THR THR LYS LEU ASN GLY PHE GLU VAL PHE ALA SEQRES 27 A 967 ARG PHE GLY SER ALA ILE ALA PRO LEU GLY ASP LEU ASP SEQRES 28 A 967 GLN ASP GLY PHE ASN ASP ILE ALA ILE ALA ALA PRO TYR SEQRES 29 A 967 GLY GLY GLU ASP LYS LYS GLY ILE VAL TYR ILE PHE ASN SEQRES 30 A 967 GLY ARG SER THR GLY LEU ASN ALA VAL PRO SER GLN ILE SEQRES 31 A 967 LEU GLU GLY GLN TRP ALA ALA ARG SER MET PRO PRO SER SEQRES 32 A 967 PHE GLY TYR SER MET LYS GLY ALA THR ASP ILE ASP LYS SEQRES 33 A 967 ASN GLY TYR PRO ASP LEU ILE VAL GLY ALA PHE GLY VAL SEQRES 34 A 967 ASP ARG ALA ILE LEU TYR ARG ALA ARG PRO VAL ILE THR SEQRES 35 A 967 VAL ASN ALA GLY LEU GLU VAL TYR PRO SER ILE LEU ASN SEQRES 36 A 967 GLN ASP ASN LYS THR CYS SER LEU PRO GLY THR ALA LEU SEQRES 37 A 967 LYS VAL SER CYS PHE ASN VAL ARG PHE CYS LEU LYS ALA SEQRES 38 A 967 ASP GLY LYS GLY VAL LEU PRO ARG LYS LEU ASN PHE GLN SEQRES 39 A 967 VAL GLU LEU LEU LEU ASP LYS LEU LYS GLN LYS GLY ALA SEQRES 40 A 967 ILE ARG ARG ALA LEU PHE LEU TYR SER ARG SER PRO SER SEQRES 41 A 967 HIS SER LYS ASN MET THR ILE SER ARG GLY GLY LEU MET SEQRES 42 A 967 GLN CYS GLU GLU LEU ILE ALA TYR LEU ARG ASP GLU SER SEQRES 43 A 967 GLU PHE ARG ASP LYS LEU THR PRO ILE THR ILE PHE MET SEQRES 44 A 967 GLU TYR ARG LEU ASP TYR ARG THR ALA ALA ASP THR THR SEQRES 45 A 967 GLY LEU GLN PRO ILE LEU ASN GLN PHE THR PRO ALA ASN SEQRES 46 A 967 ILE SER ARG GLN ALA HIS ILE LEU LEU ASP CYS GLY GLU SEQRES 47 A 967 ASP ASN VAL CYS LYS PRO LYS LEU GLU VAL SER VAL ASP SEQRES 48 A 967 SER ASP GLN LYS LYS ILE TYR ILE GLY ASP ASP ASN PRO SEQRES 49 A 967 LEU THR LEU ILE VAL LYS ALA GLN ASN GLN GLY GLU GLY SEQRES 50 A 967 ALA TYR GLU ALA GLU LEU ILE VAL SER ILE PRO LEU GLN SEQRES 51 A 967 ALA ASP PHE ILE GLY VAL VAL ARG ASN ASN GLU ALA LEU SEQRES 52 A 967 ALA ARG LEU SER CYS ALA PHE LYS THR GLU ASN GLN THR SEQRES 53 A 967 ARG GLN VAL VAL CYS ASP LEU GLY ASN PRO MET LYS ALA SEQRES 54 A 967 GLY THR GLN LEU LEU ALA GLY LEU ARG PHE SER VAL HIS SEQRES 55 A 967 GLN GLN SER GLU MET ASP THR SER VAL LYS PHE ASP LEU SEQRES 56 A 967 GLN ILE GLN SER SER ASN LEU PHE ASP LYS VAL SER PRO SEQRES 57 A 967 VAL VAL SER HIS LYS VAL ASP LEU ALA VAL LEU ALA ALA SEQRES 58 A 967 VAL GLU ILE ARG GLY VAL SER SER PRO ASP HIS VAL PHE SEQRES 59 A 967 LEU PRO ILE PRO ASN TRP GLU HIS LYS GLU ASN PRO GLU SEQRES 60 A 967 THR GLU GLU ASP VAL GLY PRO VAL VAL GLN HIS ILE TYR SEQRES 61 A 967 GLU LEU ARG ASN ASN GLY PRO SER SER PHE SER LYS ALA SEQRES 62 A 967 MET LEU HIS LEU GLN TRP PRO TYR LYS TYR ASN ASN ASN SEQRES 63 A 967 THR LEU LEU TYR ILE LEU HIS TYR ASP ILE ASP GLY PRO SEQRES 64 A 967 MET ASN CYS THR SER ASP MET GLU ILE ASN PRO LEU ARG SEQRES 65 A 967 ILE LYS ILE SER SER LEU GLN THR THR GLU LYS ASN ASP SEQRES 66 A 967 THR VAL ALA GLY GLN GLY GLU ARG ASP HIS LEU ILE THR SEQRES 67 A 967 LYS ARG ASP LEU ALA LEU SER GLU GLY ASP ILE HIS THR SEQRES 68 A 967 LEU GLY CYS GLY VAL ALA GLN CYS LEU LYS ILE VAL CYS SEQRES 69 A 967 GLN VAL GLY ARG LEU ASP ARG GLY LYS SER ALA ILE LEU SEQRES 70 A 967 TYR VAL LYS SER LEU LEU TRP THR GLU THR PHE MET ASN SEQRES 71 A 967 LYS GLU ASN GLN ASN HIS SER TYR SER LEU LYS SER SER SEQRES 72 A 967 ALA SER PHE ASN VAL ILE GLU PHE PRO TYR LYS ASN LEU SEQRES 73 A 967 PRO ILE GLU ASP ILE THR ASN SER THR LEU VAL THR THR SEQRES 74 A 967 ASN VAL THR TRP GLY ILE GLN PRO ALA PRO MET PRO VAL SEQRES 75 A 967 PRO VAL TRP VAL ILE SEQRES 1 B 695 GLY PRO ASN ILE CYS THR THR ARG GLY VAL SER SER CYS SEQRES 2 B 695 GLN GLN CYS LEU ALA VAL SER PRO MET CYS ALA TRP CYS SEQRES 3 B 695 SER ASP GLU ALA LEU PRO LEU GLY SER PRO ARG CYS ASP SEQRES 4 B 695 LEU LYS GLU ASN LEU LEU LYS ASP ASN CYS ALA PRO GLU SEQRES 5 B 695 SER ILE GLU PHE PRO VAL SER GLU ALA ARG VAL LEU GLU SEQRES 6 B 695 ASP ARG PRO LEU SER ASP LYS GLY SER GLY ASP SER SER SEQRES 7 B 695 GLN VAL THR GLN VAL SER PRO GLN ARG ILE ALA LEU ARG SEQRES 8 B 695 LEU ARG PRO ASP ASP SER LYS ASN PHE SER ILE GLN VAL SEQRES 9 B 695 ARG GLN VAL GLU ASP TYR PRO VAL ASP ILE TYR TYR LEU SEQRES 10 B 695 MET ASP LEU SER TYR SER MET LYS ASP ASP LEU TRP SER SEQRES 11 B 695 ILE GLN ASN LEU GLY THR LYS LEU ALA THR GLN MET ARG SEQRES 12 B 695 LYS LEU THR SER ASN LEU ARG ILE GLY PHE GLY ALA PHE SEQRES 13 B 695 VAL ASP LYS PRO VAL SER PRO TYR MET TYR ILE SER PRO SEQRES 14 B 695 PRO GLU ALA LEU GLU ASN PRO CYS TYR ASP MET LYS THR SEQRES 15 B 695 THR CYS LEU PRO MET PHE GLY TYR LYS HIS VAL LEU THR SEQRES 16 B 695 LEU THR ASP GLN VAL THR ARG PHE ASN GLU GLU VAL LYS SEQRES 17 B 695 LYS GLN SER VAL SER ARG ASN ARG ASP ALA PRO GLU GLY SEQRES 18 B 695 GLY PHE ASP ALA ILE MET GLN ALA THR VAL CYS ASP GLU SEQRES 19 B 695 LYS ILE GLY TRP ARG ASN ASP ALA SER HIS LEU LEU VAL SEQRES 20 B 695 PHE THR THR ASP ALA LYS THR HIS ILE ALA LEU ASP GLY SEQRES 21 B 695 ARG LEU ALA GLY ILE VAL GLN PRO ASN ASP GLY GLN CYS SEQRES 22 B 695 HIS VAL GLY SER ASP ASN HIS TYR SER ALA SER THR THR SEQRES 23 B 695 MET ASP TYR PRO SER LEU GLY LEU MET THR GLU LYS LEU SEQRES 24 B 695 SER GLN LYS ASN ILE ASN LEU ILE PHE ALA VAL THR GLU SEQRES 25 B 695 ASN VAL VAL ASN LEU TYR GLN ASN TYR SER GLU LEU ILE SEQRES 26 B 695 PRO GLY THR THR VAL GLY VAL LEU SER MET ASP SER SER SEQRES 27 B 695 ASN VAL LEU GLN LEU ILE VAL ASP ALA TYR GLY LYS ILE SEQRES 28 B 695 ARG SER LYS VAL GLU LEU GLU VAL ARG ASP LEU PRO GLU SEQRES 29 B 695 GLU LEU SER LEU SER PHE ASN ALA THR CYS LEU ASN ASN SEQRES 30 B 695 GLU VAL ILE PRO GLY LEU LYS SER CYS MET GLY LEU LYS SEQRES 31 B 695 ILE GLY ASP THR VAL SER PHE SER ILE GLU ALA LYS VAL SEQRES 32 B 695 ARG GLY CYS PRO GLN GLU LYS GLU LYS SER PHE THR ILE SEQRES 33 B 695 LYS PRO VAL GLY PHE LYS ASP SER LEU ILE VAL GLN VAL SEQRES 34 B 695 THR PHE ASP CYS ASP CYS ALA CYS GLN ALA GLN ALA GLU SEQRES 35 B 695 PRO ASN SER HIS ARG CYS ASN ASN GLY ASN GLY THR PHE SEQRES 36 B 695 GLU CYS GLY VAL CYS ARG CYS GLY PRO GLY TRP LEU GLY SEQRES 37 B 695 SER GLN CYS GLU CYS SER GLU GLU ASP TYR ARG PRO SER SEQRES 38 B 695 GLN GLN ASP GLU CYS SER PRO ARG GLU GLY GLN PRO VAL SEQRES 39 B 695 CYS SER GLN ARG GLY GLU CYS LEU CYS GLY GLN CYS VAL SEQRES 40 B 695 CYS HIS SER SER ASP PHE GLY LYS ILE THR GLY LYS TYR SEQRES 41 B 695 CYS GLU CYS ASP ASP PHE SER CYS VAL ARG TYR LYS GLY SEQRES 42 B 695 GLU MET CYS SER GLY HIS GLY GLN CYS SER CYS GLY ASP SEQRES 43 B 695 CYS LEU CYS ASP SER ASP TRP THR GLY TYR TYR CYS ASN SEQRES 44 B 695 CYS THR THR ARG THR ASP THR CYS MET SER SER ASN GLY SEQRES 45 B 695 LEU LEU CYS SER GLY ARG GLY LYS CYS GLU CYS GLY SER SEQRES 46 B 695 CYS VAL CYS ILE GLN PRO GLY SER TYR GLY ASP THR CYS SEQRES 47 B 695 GLU LYS CYS PRO THR CYS PRO ASP ALA CYS THR PHE LYS SEQRES 48 B 695 LYS GLU CYS VAL GLU CYS LYS LYS PHE ASP ARG GLY ALA SEQRES 49 B 695 LEU HIS ASP GLU ASN THR CYS ASN ARG TYR CYS ARG ASP SEQRES 50 B 695 GLU ILE GLU SER VAL LYS GLU LEU LYS ASP THR GLY LYS SEQRES 51 B 695 ASP ALA VAL ASN CYS THR TYR LYS ASN GLU ASP ASP CYS SEQRES 52 B 695 VAL VAL ARG PHE GLN TYR TYR GLU ASP SER SER GLY LYS SEQRES 53 B 695 SER ILE LEU TYR VAL VAL GLU GLU PRO GLU CYS PRO LYS SEQRES 54 B 695 GLY PRO ASP ILE LEU VAL SEQRES 1 C 32 CYS PRO GLN GLY ARG GLY ASP TRP ALA PRO THR SER CYS SEQRES 2 C 32 LYS GLN ASP SER ASP CYS LEU ALA GLY CYS VAL CYS GLY SEQRES 3 C 32 PRO ASN GLY PHE CYS GLY HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET BMA F 3 11 HET BMA F 4 11 HET MAN F 5 11 HET MAN F 6 11 HET NAG G 1 14 HET NAG G 2 14 HET BMA G 3 11 HET MAN G 4 11 HET NAG H 1 14 HET NAG H 2 14 HET NAG I 1 14 HET NAG I 2 14 HET NAG J 1 14 HET NAG J 2 14 HET NAG K 1 14 HET NAG K 2 14 HET NAG L 1 14 HET NAG L 2 14 HET BMA L 3 11 HET NAG A1017 14 HET NAG A1020 14 HET MN A1025 1 HET MN A1026 1 HET MN A1027 1 HET MN A1028 1 HET MN A1029 1 HET NAG B 701 14 HET NAG B 702 14 HET MN B 708 1 HET MN B 709 1 HET MN B 710 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 22(C8 H15 N O6) FORMUL 4 BMA 5(C6 H12 O6) FORMUL 4 MAN 4(C6 H12 O6) FORMUL 15 MN 8(MN 2+) FORMUL 25 HOH *4(H2 O) HELIX 1 AA1 GLY A 175 GLN A 180 1 6 HELIX 2 AA2 VAL A 188 LYS A 194 1 7 HELIX 3 AA3 GLN A 214 ASP A 218 5 5 HELIX 4 AA4 ALA A 246 LEU A 250 5 5 HELIX 5 AA5 GLY A 366 LYS A 370 5 5 HELIX 6 AA6 TRP A 904 MET A 909 1 6 HELIX 7 AA7 ILE B 4 GLY B 9 1 6 HELIX 8 AA8 SER B 12 ALA B 18 1 7 HELIX 9 AA9 GLU B 42 ASP B 47 1 6 HELIX 10 AB1 SER B 121 LEU B 128 5 8 HELIX 11 AB2 ASN B 133 ARG B 143 1 11 HELIX 12 AB3 PRO B 169 LEU B 173 5 5 HELIX 13 AB4 TYR B 178 THR B 182 5 5 HELIX 14 AB5 GLN B 199 LYS B 209 1 11 HELIX 15 AB6 GLY B 222 CYS B 232 1 11 HELIX 16 AB7 CYS B 232 GLY B 237 1 6 HELIX 17 AB8 LEU B 258 GLY B 264 5 7 HELIX 18 AB9 SER B 291 LYS B 302 1 12 HELIX 19 AC1 THR B 311 GLU B 323 1 13 HELIX 20 AC2 GLN B 342 SER B 353 1 12 HELIX 21 AC3 GLU B 534 GLY B 538 5 5 HELIX 22 AC4 LEU B 573 GLY B 577 5 5 HELIX 23 AC5 ALA B 607 PHE B 620 1 14 HELIX 24 AC6 GLY B 623 GLU B 628 1 6 HELIX 25 AC7 THR B 630 CYS B 635 1 6 SHEET 1 AA1 4 ALA A 9 SER A 12 0 SHEET 2 AA1 4 ARG A 431 TYR A 435 -1 O ALA A 432 N TYR A 11 SHEET 3 AA1 4 ASP A 421 ALA A 426 -1 N LEU A 422 O TYR A 435 SHEET 4 AA1 4 MET A 408 THR A 412 -1 N LYS A 409 O ILE A 423 SHEET 1 AA2 4 VAL A 23 PHE A 26 0 SHEET 2 AA2 4 PHE A 35 ALA A 40 -1 O LEU A 37 N ASP A 24 SHEET 3 AA2 4 GLN A 55 ASP A 60 -1 O LEU A 57 N VAL A 38 SHEET 4 AA2 4 CYS A 67 PRO A 69 -1 O GLN A 68 N LYS A 58 SHEET 1 AA3 2 ASP A 79 ALA A 81 0 SHEET 2 AA3 2 ASP A 84 PRO A 85 -1 O ASP A 84 N TYR A 80 SHEET 1 AA4 2 GLU A 87 PHE A 88 0 SHEET 2 AA4 2 HIS A 113 TRP A 114 -1 O HIS A 113 N PHE A 88 SHEET 1 AA5 4 SER A 97 SER A 100 0 SHEET 2 AA5 4 ILE A 105 ALA A 109 -1 O LEU A 106 N ARG A 99 SHEET 3 AA5 4 THR A 127 GLN A 131 -1 O THR A 127 N ALA A 109 SHEET 4 AA5 4 THR A 136 TYR A 139 -1 O VAL A 137 N LEU A 130 SHEET 1 AA6 4 SER A 160 PHE A 163 0 SHEET 2 AA6 4 ARG A 168 GLY A 173 -1 O LEU A 170 N ASP A 162 SHEET 3 AA6 4 GLN A 182 GLN A 187 -1 O ASP A 186 N VAL A 169 SHEET 4 AA6 4 LEU A 208 ALA A 209 -1 O LEU A 208 N SER A 185 SHEET 1 AA7 4 VAL A 226 GLY A 229 0 SHEET 2 AA7 4 ASP A 238 VAL A 243 -1 O VAL A 240 N ALA A 227 SHEET 3 AA7 4 MET A 252 TYR A 256 -1 O TYR A 256 N PHE A 239 SHEET 4 AA7 4 SER A 263 THR A 268 -1 O LEU A 264 N ILE A 255 SHEET 1 AA8 4 VAL A 280 THR A 283 0 SHEET 2 AA8 4 ASP A 292 ALA A 297 -1 O ASP A 292 N THR A 283 SHEET 3 AA8 4 GLN A 314 GLN A 320 -1 O SER A 316 N ILE A 295 SHEET 4 AA8 4 PHE A 326 ASN A 332 -1 O GLN A 327 N LEU A 319 SHEET 1 AA9 2 MET A 301 ARG A 303 0 SHEET 2 AA9 2 LEU A 309 GLU A 311 -1 O GLN A 310 N ASP A 302 SHEET 1 AB1 4 ALA A 343 GLY A 348 0 SHEET 2 AB1 4 ASP A 357 ALA A 362 -1 O ASP A 357 N GLY A 348 SHEET 3 AB1 4 ILE A 372 ARG A 379 -1 O TYR A 374 N ILE A 360 SHEET 4 AB1 4 GLY A 382 LEU A 383 -1 O GLY A 382 N ARG A 379 SHEET 1 AB2 4 ALA A 343 GLY A 348 0 SHEET 2 AB2 4 ASP A 357 ALA A 362 -1 O ASP A 357 N GLY A 348 SHEET 3 AB2 4 ILE A 372 ARG A 379 -1 O TYR A 374 N ILE A 360 SHEET 4 AB2 4 GLN A 389 GLU A 392 -1 O LEU A 391 N VAL A 373 SHEET 1 AB3 5 ALA A 511 PHE A 513 0 SHEET 2 AB3 5 ILE A 539 LEU A 542 -1 O TYR A 541 N LEU A 512 SHEET 3 AB3 5 CYS A 472 ASP A 482 -1 N PHE A 473 O ALA A 540 SHEET 4 AB3 5 VAL A 440 VAL A 449 -1 N GLU A 448 O ARG A 476 SHEET 5 AB3 5 ILE A 577 LEU A 578 1 O ILE A 577 N ILE A 441 SHEET 1 AB4 5 ILE A 453 LEU A 454 0 SHEET 2 AB4 5 ASN A 585 ILE A 592 1 O HIS A 591 N LEU A 454 SHEET 3 AB4 5 ILE A 555 LEU A 563 -1 N ILE A 555 O ALA A 590 SHEET 4 AB4 5 LYS A 490 LEU A 499 -1 N LEU A 498 O PHE A 558 SHEET 5 AB4 5 SER A 520 SER A 528 -1 O HIS A 521 N LEU A 497 SHEET 1 AB5 4 LEU A 606 ASP A 611 0 SHEET 2 AB5 4 ASN A 623 ASN A 633 -1 O LYS A 630 N SER A 609 SHEET 3 AB5 4 THR A 691 VAL A 701 -1 O LEU A 693 N ALA A 631 SHEET 4 AB5 4 ASP A 652 VAL A 656 -1 N GLY A 655 O ARG A 698 SHEET 1 AB6 3 LYS A 616 TYR A 618 0 SHEET 2 AB6 3 LYS A 733 ALA A 737 1 O ALA A 737 N ILE A 617 SHEET 3 AB6 3 VAL A 711 LYS A 712 -1 N VAL A 711 O VAL A 734 SHEET 1 AB7 4 CYS A 668 LYS A 671 0 SHEET 2 AB7 4 GLN A 678 GLY A 684 -1 O GLN A 678 N LYS A 671 SHEET 3 AB7 4 ALA A 641 SER A 646 -1 N VAL A 645 O VAL A 679 SHEET 4 AB7 4 ASP A 714 GLN A 718 -1 O GLN A 716 N ILE A 644 SHEET 1 AB8 4 VAL A 742 SER A 749 0 SHEET 2 AB8 4 VAL A 775 ASN A 784 -1 O GLU A 781 N ARG A 745 SHEET 3 AB8 4 SER A 894 LEU A 903 -1 O ALA A 895 N LEU A 782 SHEET 4 AB8 4 LEU A 809 ASP A 817 -1 N ASP A 815 O TYR A 898 SHEET 1 AB9 6 HIS A 752 LEU A 755 0 SHEET 2 AB9 6 ILE A 941 TRP A 953 1 O THR A 952 N LEU A 755 SHEET 3 AB9 6 SER A 917 GLU A 930 -1 N SER A 922 O VAL A 947 SHEET 4 AB9 6 LYS A 792 LYS A 802 -1 N HIS A 796 O SER A 925 SHEET 5 AB9 6 GLN A 878 VAL A 886 -1 O CYS A 884 N LEU A 795 SHEET 6 AB9 6 MET A 820 SER A 824 -1 N ASN A 821 O GLN A 885 SHEET 1 AC1 4 HIS A 752 LEU A 755 0 SHEET 2 AC1 4 ILE A 941 TRP A 953 1 O THR A 952 N LEU A 755 SHEET 3 AC1 4 SER A 917 GLU A 930 -1 N SER A 922 O VAL A 947 SHEET 4 AC1 4 ILE A 869 LEU A 872 1 N LEU A 872 O SER A 919 SHEET 1 AC2 2 TRP B 25 CYS B 26 0 SHEET 2 AC2 2 ILE B 54 GLU B 55 -1 O GLU B 55 N TRP B 25 SHEET 1 AC3 6 GLU B 60 GLU B 65 0 SHEET 2 AC3 6 ARG B 87 LEU B 92 -1 O ALA B 89 N ARG B 62 SHEET 3 AC3 6 LEU B 425 PHE B 431 1 O THR B 430 N LEU B 90 SHEET 4 AC3 6 LYS B 412 PRO B 418 -1 N PHE B 414 O VAL B 427 SHEET 5 AC3 6 LYS B 354 ARG B 360 -1 N GLU B 358 O LYS B 417 SHEET 6 AC3 6 SER B 385 MET B 387 -1 O CYS B 386 N VAL B 355 SHEET 1 AC4 5 VAL B 83 SER B 84 0 SHEET 2 AC4 5 SER B 97 ARG B 105 -1 O GLN B 103 N SER B 84 SHEET 3 AC4 5 THR B 394 VAL B 403 -1 O ILE B 399 N PHE B 100 SHEET 4 AC4 5 LEU B 366 THR B 373 -1 N ASN B 371 O SER B 398 SHEET 5 AC4 5 ILE B 380 PRO B 381 -1 O ILE B 380 N ALA B 372 SHEET 1 AC5 6 TYR B 190 THR B 197 0 SHEET 2 AC5 6 LEU B 149 PHE B 156 -1 N ALA B 155 O LYS B 191 SHEET 3 AC5 6 VAL B 112 ASP B 119 1 N TYR B 116 O GLY B 154 SHEET 4 AC5 6 SER B 243 THR B 250 1 O VAL B 247 N LEU B 117 SHEET 5 AC5 6 ASN B 305 VAL B 310 1 O ASN B 305 N LEU B 246 SHEET 6 AC5 6 THR B 329 VAL B 332 1 O THR B 329 N PHE B 308 SHEET 1 AC6 2 GLY B 540 SER B 543 0 SHEET 2 AC6 2 ASP B 546 CYS B 549 -1 O ASP B 546 N SER B 543 SHEET 1 AC7 2 TRP B 553 THR B 554 0 SHEET 2 AC7 2 CYS B 560 THR B 561 -1 O CYS B 560 N THR B 554 SHEET 1 AC8 2 GLY B 579 GLU B 582 0 SHEET 2 AC8 2 SER B 585 CYS B 588 -1 O VAL B 587 N LYS B 580 SHEET 1 AC9 4 ILE B 639 SER B 641 0 SHEET 2 AC9 4 ILE B 678 VAL B 681 1 O VAL B 681 N GLU B 640 SHEET 3 AC9 4 VAL B 664 TYR B 670 -1 N GLN B 668 O TYR B 680 SHEET 4 AC9 4 ALA B 652 LYS B 658 -1 N CYS B 655 O PHE B 667 SSBOND 1 CYS A 59 CYS A 67 1555 1555 2.04 SSBOND 2 CYS A 108 CYS A 128 1555 1555 2.04 SSBOND 3 CYS A 142 CYS A 155 1555 1555 2.03 SSBOND 4 CYS A 461 CYS A 472 1555 1555 2.03 SSBOND 5 CYS A 478 CYS A 535 1555 1555 2.04 SSBOND 6 CYS A 596 CYS A 602 1555 1555 2.04 SSBOND 7 CYS A 668 CYS A 681 1555 1555 2.05 SSBOND 8 CYS A 822 CYS A 884 1555 1555 2.02 SSBOND 9 CYS B 5 CYS B 23 1555 1555 2.03 SSBOND 10 CYS B 13 CYS B 435 1555 1555 2.03 SSBOND 11 CYS B 16 CYS B 38 1555 1555 2.03 SSBOND 12 CYS B 26 CYS B 49 1555 1555 2.04 SSBOND 13 CYS B 177 CYS B 184 1555 1555 2.05 SSBOND 14 CYS B 232 CYS B 273 1555 1555 2.04 SSBOND 15 CYS B 374 CYS B 386 1555 1555 2.03 SSBOND 16 CYS B 406 CYS B 433 1555 1555 2.03 SSBOND 17 CYS B 437 CYS B 457 1555 1555 2.04 SSBOND 18 CYS B 448 CYS B 460 1555 1555 2.04 SSBOND 19 CYS B 462 CYS B 471 1555 1555 2.04 SSBOND 20 CYS B 473 CYS B 503 1555 1555 2.02 SSBOND 21 CYS B 486 CYS B 501 1555 1555 2.03 SSBOND 22 CYS B 495 CYS B 506 1555 1555 2.03 SSBOND 23 CYS B 508 CYS B 521 1555 1555 2.01 SSBOND 24 CYS B 523 CYS B 544 1555 1555 2.04 SSBOND 25 CYS B 528 CYS B 542 1555 1555 2.03 SSBOND 26 CYS B 536 CYS B 547 1555 1555 2.04 SSBOND 27 CYS B 549 CYS B 558 1555 1555 2.04 SSBOND 28 CYS B 560 CYS B 583 1555 1555 2.04 SSBOND 29 CYS B 567 CYS B 581 1555 1555 2.04 SSBOND 30 CYS B 575 CYS B 586 1555 1555 2.04 SSBOND 31 CYS B 588 CYS B 598 1555 1555 2.05 SSBOND 32 CYS B 601 CYS B 604 1555 1555 2.04 SSBOND 33 CYS B 608 CYS B 655 1555 1555 2.03 SSBOND 34 CYS B 614 CYS B 635 1555 1555 2.03 SSBOND 35 CYS B 617 CYS B 631 1555 1555 2.03 SSBOND 36 CYS B 663 CYS B 687 1555 1555 2.05 SSBOND 37 CYS C 2 CYS C 24 1555 1555 2.04 SSBOND 38 CYS C 14 CYS C 26 1555 1555 2.03 SSBOND 39 CYS C 20 CYS C 32 1555 1555 2.03 LINK ND2 ASN A 44 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 260 C1 NAG E 1 1555 1555 1.43 LINK ND2 ASN A 266 C1 NAG F 1 1555 1555 1.43 LINK ND2 ASN A 458 C1 NAG G 1 1555 1555 1.44 LINK ND2 ASN A 524 C1 NAG A1017 1555 1555 1.44 LINK ND2 ASN A 585 C1 NAG H 1 1555 1555 1.45 LINK ND2 ASN A 821 C1 NAG A1020 1555 1555 1.44 LINK ND2 ASN A 943 C1 NAG I 1 1555 1555 1.44 LINK ND2 ASN A 950 C1 NAG J 1 1555 1555 1.44 LINK ND2 ASN B 99 C1 NAG B 701 1555 1555 1.46 LINK ND2 ASN B 320 C1 NAG B 702 1555 1555 1.44 LINK ND2 ASN B 371 C1 NAG K 1 1555 1555 1.45 LINK ND2 ASN B 559 C1 NAG L 1 1555 1555 1.44 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.42 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.44 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.44 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.45 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.43 LINK O4 NAG F 2 C1 BMA F 3 1555 1555 1.43 LINK O6 BMA F 3 C1 BMA F 4 1555 1555 1.44 LINK O3 BMA F 3 C1 MAN F 6 1555 1555 1.44 LINK O4 BMA F 4 C1 MAN F 5 1555 1555 1.45 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.43 LINK O4 NAG G 2 C1 BMA G 3 1555 1555 1.44 LINK O3 BMA G 3 C1 MAN G 4 1555 1555 1.45 LINK O4 NAG H 1 C1 NAG H 2 1555 1555 1.45 LINK O4 NAG I 1 C1 NAG I 2 1555 1555 1.44 LINK O4 NAG J 1 C1 NAG J 2 1555 1555 1.44 LINK O4 NAG K 1 C1 NAG K 2 1555 1555 1.45 LINK O4 NAG L 1 C1 NAG L 2 1555 1555 1.44 LINK O4 NAG L 2 C1 BMA L 3 1555 1555 1.45 LINK OD1 ASP A 230 MN MN A1025 1555 1555 2.24 LINK OD1 ASN A 232 MN MN A1025 1555 1555 2.12 LINK ND2 ASN A 232 MN MN A1025 1555 1555 2.66 LINK OD1 ASP A 234 MN MN A1025 1555 1555 2.15 LINK O ILE A 236 MN MN A1025 1555 1555 1.93 LINK OD1 ASP A 238 MN MN A1025 1555 1555 2.12 LINK OD2 ASP A 238 MN MN A1025 1555 1555 2.33 LINK OD2 ASP A 284 MN MN A1026 1555 1555 2.79 LINK OD1 ASN A 286 MN MN A1026 1555 1555 2.17 LINK OD1 ASP A 288 MN MN A1026 1555 1555 2.19 LINK O TYR A 290 MN MN A1026 1555 1555 2.26 LINK OD1 ASP A 292 MN MN A1026 1555 1555 2.43 LINK OD2 ASP A 292 MN MN A1026 1555 1555 2.60 LINK OD1 ASP A 349 MN MN A1027 1555 1555 2.49 LINK OD1 ASP A 351 MN MN A1027 1555 1555 2.27 LINK OD1 ASP A 353 MN MN A1027 1555 1555 2.29 LINK OD2 ASP A 353 MN MN A1027 1555 1555 2.69 LINK O PHE A 355 MN MN A1027 1555 1555 2.37 LINK OD1 ASP A 357 MN MN A1027 1555 1555 2.22 LINK OD2 ASP A 357 MN MN A1027 1555 1555 2.50 LINK OD1 ASP A 413 MN MN A1028 1555 1555 2.53 LINK OD1 ASP A 415 MN MN A1028 1555 1555 2.42 LINK OD1 ASN A 417 MN MN A1028 1555 1555 2.44 LINK O TYR A 419 MN MN A1028 1555 1555 2.11 LINK OD1 ASP A 421 MN MN A1028 1555 1555 2.21 LINK OD2 ASP A 421 MN MN A1028 1555 1555 2.44 LINK O CYS A 596 MN MN A1029 1555 1555 2.23 LINK OD1 ASP A 599 MN MN A1029 1555 1555 2.21 LINK OD2 ASP A 599 MN MN A1029 1555 1555 2.29 LINK O VAL A 601 MN MN A1029 1555 1555 2.10 LINK OE1 GLU A 636 MN MN A1029 1555 1555 2.23 LINK OE2 GLU A 636 MN MN A1029 1555 1555 2.07 LINK OG SER B 121 MN MN B 708 1555 1555 2.34 LINK OG SER B 123 MN MN B 708 1555 1555 2.24 LINK O SER B 123 MN MN B 709 1555 1555 2.33 LINK OD1 ASP B 126 MN MN B 709 1555 1555 2.36 LINK OD1 ASP B 127 MN MN B 709 1555 1555 2.48 LINK OD2 ASP B 158 MN MN B 710 1555 1555 2.26 LINK ND2 ASN B 215 MN MN B 710 1555 1555 2.72 LINK O ASP B 217 MN MN B 710 1555 1555 2.34 LINK OD1 ASP B 217 MN MN B 710 1555 1555 2.16 LINK O PRO B 219 MN MN B 710 1555 1555 2.22 LINK OE1 GLU B 220 MN MN B 708 1555 1555 2.18 LINK OE2 GLU B 220 MN MN B 710 1555 1555 2.36 LINK OD1 ASP B 251 MN MN B 709 1555 1555 2.26 LINK OD2 ASP B 251 MN MN B 709 1555 1555 2.62 LINK MN MN B 708 O HOH B 801 1555 1555 2.18 LINK MN MN B 708 O HOH B 802 1555 1555 2.38 LINK MN MN B 708 OD1 ASP C 8 1555 1555 2.25 CISPEP 1 ASN A 685 PRO A 686 0 3.40 CISPEP 2 SER A 749 PRO A 750 0 1.22 CISPEP 3 LEU A 755 PRO A 756 0 4.59 CISPEP 4 SER B 84 PRO B 85 0 -4.09 CISPEP 5 SER B 162 PRO B 163 0 5.32 CRYST1 129.764 129.764 305.896 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007706 0.004449 0.000000 0.00000 SCALE2 0.000000 0.008898 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003269 0.00000