HEADER IMMUNE SYSTEM 21-OCT-18 6MTO TITLE CRYSTAL STRUCTURE OF VRC42.01 FAB IN COMPLEX WITH T117-F MPER SCAFFOLD COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY VRC42.01 FAB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY VRC42.01 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: VRC42 EPITOPE T117-F SCAFFOLD; COMPND 11 CHAIN: T; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 19 ORGANISM_TAXID: 11676; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PVRC8400 KEYWDS ANTI-HIV-1 HUMAN ANTIBODY, MPER, GP41, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,A.DRUZ,W.H.LAW,D.PENG,B.ZHANG,N.A.DORIA-ROSE,P.D.KWONG REVDAT 3 11-OCT-23 6MTO 1 REMARK REVDAT 2 04-DEC-19 6MTO 1 REMARK REVDAT 1 27-MAR-19 6MTO 0 JRNL AUTH S.J.KREBS,Y.D.KWON,C.A.SCHRAMM,W.H.LAW,G.DONOFRIO,K.H.ZHOU, JRNL AUTH 2 S.GIFT,V.DUSSUPT,I.S.GEORGIEV,S.SCHATZLE,J.R.MCDANIEL, JRNL AUTH 3 Y.T.LAI,M.SASTRY,B.ZHANG,M.C.JAROSINSKI,A.RANSIER, JRNL AUTH 4 A.L.CHENINE,M.ASOKAN,R.T.BAILER,M.BOSE,A.CAGIGI,E.M.CALE, JRNL AUTH 5 G.Y.CHUANG,S.DARKO,J.I.DRISCOLL,A.DRUZ,J.GORMAN,F.LABOUNE, JRNL AUTH 6 M.K.LOUDER,K.MCKEE,L.MENDEZ,M.A.MOODY,A.M.O'SULLIVAN,C.OWEN, JRNL AUTH 7 D.PENG,R.RAWI,E.SANDERS-BUELL,C.H.SHEN,A.R.SHIAKOLAS, JRNL AUTH 8 T.STEPHENS,Y.TSYBOVSKY,C.TUCKER,R.VERARDI,K.WANG,J.ZHOU, JRNL AUTH 9 T.ZHOU,G.GEORGIOU,S.M.ALAM,B.F.HAYNES,M.ROLLAND,G.R.MATYAS, JRNL AUTH10 V.R.POLONIS,A.B.MCDERMOTT,D.C.DOUEK,L.SHAPIRO,S.TOVANABUTRA, JRNL AUTH11 N.L.MICHAEL,J.R.MASCOLA,M.L.ROBB,P.D.KWONG,N.A.DORIA-ROSE JRNL TITL LONGITUDINAL ANALYSIS REVEALS EARLY DEVELOPMENT OF THREE JRNL TITL 2 MPER-DIRECTED NEUTRALIZING ANTIBODY LINEAGES FROM AN JRNL TITL 3 HIV-1-INFECTED INDIVIDUAL. JRNL REF IMMUNITY V. 50 677 2019 JRNL REFN ISSN 1097-4180 JRNL PMID 30876875 JRNL DOI 10.1016/J.IMMUNI.2019.02.008 REMARK 2 REMARK 2 RESOLUTION. 2.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 17691 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.2645 - 6.1763 0.90 1264 142 0.1938 0.2254 REMARK 3 2 6.1763 - 4.9091 0.96 1318 151 0.1995 0.2690 REMARK 3 3 4.9091 - 4.2905 0.97 1292 149 0.1737 0.2441 REMARK 3 4 4.2905 - 3.8991 0.98 1323 143 0.1974 0.2524 REMARK 3 5 3.8991 - 3.6202 0.98 1308 146 0.2287 0.2458 REMARK 3 6 3.6202 - 3.4070 0.98 1302 146 0.2456 0.2793 REMARK 3 7 3.4070 - 3.2366 0.98 1321 155 0.2690 0.3123 REMARK 3 8 3.2366 - 3.0959 0.98 1307 136 0.2905 0.3482 REMARK 3 9 3.0959 - 2.9768 0.98 1296 144 0.3094 0.3595 REMARK 3 10 2.9768 - 2.8741 0.95 1278 150 0.2969 0.3452 REMARK 3 11 2.8741 - 2.7843 0.89 1159 132 0.3432 0.4033 REMARK 3 12 2.7843 - 2.7048 0.78 1044 114 0.3337 0.3607 REMARK 3 13 2.7048 - 2.6336 0.53 694 77 0.3461 0.3781 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 33.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4649 REMARK 3 ANGLE : 0.528 6330 REMARK 3 CHIRALITY : 0.042 701 REMARK 3 PLANARITY : 0.005 821 REMARK 3 DIHEDRAL : 13.383 2771 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.3627 -33.1876 77.0447 REMARK 3 T TENSOR REMARK 3 T11: 0.5400 T22: 0.4665 REMARK 3 T33: 0.9766 T12: -0.1091 REMARK 3 T13: -0.0033 T23: -0.1212 REMARK 3 L TENSOR REMARK 3 L11: 4.9966 L22: 3.8736 REMARK 3 L33: 3.7298 L12: -4.4338 REMARK 3 L13: 2.9215 L23: -1.0021 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: 0.1684 S13: -0.7735 REMARK 3 S21: -0.2820 S22: 0.1691 S23: 0.6561 REMARK 3 S31: 0.3105 S32: 0.0317 S33: -0.2720 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:107 ) REMARK 3 ORIGIN FOR THE GROUP (A): 183.1002 -12.5754 83.8920 REMARK 3 T TENSOR REMARK 3 T11: 0.6443 T22: 0.3978 REMARK 3 T33: 1.0206 T12: 0.0276 REMARK 3 T13: 0.0028 T23: -0.0627 REMARK 3 L TENSOR REMARK 3 L11: 5.5738 L22: 2.3537 REMARK 3 L33: 7.0551 L12: 0.5805 REMARK 3 L13: 2.5148 L23: 0.2151 REMARK 3 S TENSOR REMARK 3 S11: -0.3299 S12: -0.0400 S13: 1.1264 REMARK 3 S21: 0.3485 S22: 0.0605 S23: 0.4169 REMARK 3 S31: -0.8281 S32: 0.1340 S33: 0.4831 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 120:217 ) REMARK 3 ORIGIN FOR THE GROUP (A): 203.4793 -34.8279 105.6327 REMARK 3 T TENSOR REMARK 3 T11: 0.9829 T22: 0.4196 REMARK 3 T33: 0.6986 T12: -0.0925 REMARK 3 T13: -0.0553 T23: 0.0204 REMARK 3 L TENSOR REMARK 3 L11: 5.3429 L22: 4.0139 REMARK 3 L33: 6.4184 L12: 0.0279 REMARK 3 L13: 2.1873 L23: 1.6575 REMARK 3 S TENSOR REMARK 3 S11: 0.2299 S12: -0.6129 S13: -0.7327 REMARK 3 S21: 1.4638 S22: -0.2980 S23: -0.4951 REMARK 3 S31: 0.6422 S32: -0.1812 S33: 0.1729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 108:211 ) REMARK 3 ORIGIN FOR THE GROUP (A): 212.5962 -21.6188 101.7726 REMARK 3 T TENSOR REMARK 3 T11: 0.8903 T22: 0.5888 REMARK 3 T33: 0.8955 T12: -0.1262 REMARK 3 T13: -0.2312 T23: -0.0093 REMARK 3 L TENSOR REMARK 3 L11: 8.4234 L22: 6.5510 REMARK 3 L33: 2.4676 L12: -0.6113 REMARK 3 L13: 0.7805 L23: 1.0768 REMARK 3 S TENSOR REMARK 3 S11: 0.2557 S12: -0.1078 S13: 0.1575 REMARK 3 S21: 1.0493 S22: -0.1648 S23: -0.9944 REMARK 3 S31: 0.1405 S32: 0.4716 S33: -0.1749 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN T AND RESID 11:167 ) REMARK 3 ORIGIN FOR THE GROUP (A): 162.8081 -28.2643 56.9790 REMARK 3 T TENSOR REMARK 3 T11: 0.7059 T22: 1.0351 REMARK 3 T33: 1.1906 T12: -0.1296 REMARK 3 T13: -0.2248 T23: -0.1821 REMARK 3 L TENSOR REMARK 3 L11: 8.3697 L22: 3.7965 REMARK 3 L33: 6.9773 L12: -0.8036 REMARK 3 L13: -1.3253 L23: -0.1208 REMARK 3 S TENSOR REMARK 3 S11: -0.2114 S12: 1.1265 S13: -0.6338 REMARK 3 S21: -0.3895 S22: -0.3336 S23: 0.8977 REMARK 3 S31: 0.5524 S32: -1.2801 S33: 0.4924 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MTO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL - LIQUID NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.630 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.4 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.55600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6MTP, VRC42.04 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 400, 2% PEG 3350, 0.1M NA REMARK 280 ACETATE 5.5, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 92.64000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.70900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 92.64000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.70900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 SER H 130 REMARK 465 LYS H 131 REMARK 465 SER H 132 REMARK 465 THR H 133 REMARK 465 SER H 134 REMARK 465 GLY H 135 REMARK 465 GLN T 10 REMARK 465 GLY T 168 REMARK 465 PRO T 169 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LYS L 126 NH2 ARG T 82 4747 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP H 146 60.95 63.02 REMARK 500 PRO H 149 -162.20 -100.76 REMARK 500 VAL T 66 -140.99 55.44 REMARK 500 GLU T 67 -53.04 -135.63 REMARK 500 HIS T 75 -166.61 -163.44 REMARK 500 THR T 76 -168.19 -162.34 REMARK 500 ASP T 136 105.48 -55.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 6MTO L 1 214 PDB 6MTO 6MTO 1 214 DBREF 6MTO H 1 217 PDB 6MTO 6MTO 1 217 DBREF 6MTO T 10 169 PDB 6MTO 6MTO 10 169 SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO ASP THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA SER LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN ASN VAL ARG ASN SER ASN LEU ALA TRP TYR GLN HIS SEQRES 4 L 215 LYS PRO GLY GLN PRO PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA SER GLY ILE PRO GLY ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR GLY GLY SER PHE GLY THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU PHE ARG ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS SEQRES 1 H 225 GLN VAL GLN LEU VAL GLN SER GLY PRO GLU VAL LYS LYS SEQRES 2 H 225 PRO GLY SER SER LEU LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 225 GLY SER PHE SER THR TYR THR LEU SER TRP VAL ARG GLN SEQRES 4 H 225 THR PRO GLY GLN GLY LEU GLU TRP MET GLY GLY ILE ILE SEQRES 5 H 225 PRO LEU LEU GLY LEU PRO ASN TYR ALA PRO LYS PHE GLN SEQRES 6 H 225 GLY ARG VAL THR PHE SER ALA ASP THR SER THR ASN THR SEQRES 7 H 225 ALA TYR MET GLU MET SER ARG LEU ARG PHE GLU ASP THR SEQRES 8 H 225 ALA VAL TYR PHE CYS ALA ARG GLU GLY ALA GLY TRP PHE SEQRES 9 H 225 GLY LYS PRO VAL GLY ALA MET GLY TYR TRP GLY GLN GLY SEQRES 10 H 225 THR THR VAL THR VAL SER SER ALA SER THR LYS GLY PRO SEQRES 11 H 225 SER VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER SEQRES 12 H 225 GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 H 225 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA SEQRES 14 H 225 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 H 225 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 H 225 PRO SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN SEQRES 17 H 225 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS SEQRES 18 H 225 VAL GLU PRO LYS SEQRES 1 T 160 GLN GLY ILE HIS PHE ARG ARG HIS TYR VAL ARG HIS LEU SEQRES 2 T 160 PRO LYS GLU VAL SER GLN ASN ASP ILE ILE LYS ALA LEU SEQRES 3 T 160 ALA SER PRO LEU ILE ASN ASP GLY MET VAL VAL SER ASP SEQRES 4 T 160 PHE ALA ASP HIS VAL ILE THR ARG GLU GLN ASN PHE PRO SEQRES 5 T 160 THR GLY LEU PRO VAL GLU PRO VAL GLY VAL ALA ILE PRO SEQRES 6 T 160 HIS THR ASP SER LYS TYR VAL ARG GLN ASN ALA ILE SER SEQRES 7 T 160 VAL GLY ILE LEU ALA GLU PRO VAL ASN PHE GLU ASP ALA SEQRES 8 T 160 GLY GLY GLU PRO ASP PRO VAL PRO VAL ARG VAL VAL PHE SEQRES 9 T 160 MET LEU ALA LEU GLY ASN TRP PHE ASP ILE THR LYS TRP SEQRES 10 T 160 LEU TRP TYR ILE LYS ALA VAL ILE GLN ASP GLU ASP PHE SEQRES 11 T 160 MET GLN GLN LEU LEU VAL MET ASN ASP ASP GLU ILE TYR SEQRES 12 T 160 GLN SER ILE TYR THR ARG ILE SER GLU LEU GLU VAL LEU SEQRES 13 T 160 PHE GLN GLY PRO FORMUL 4 HOH *9(H2 O) HELIX 1 AA1 VAL L 28 SER L 31 5 4 HELIX 2 AA2 GLU L 79 PHE L 83 5 5 HELIX 3 AA3 SER L 121 GLY L 128 1 8 HELIX 4 AA4 LYS L 183 HIS L 189 1 7 HELIX 5 AA5 ARG H 83 THR H 87 5 5 HELIX 6 AA6 TRP H 99 GLY H 100A 5 3 HELIX 7 AA7 SER H 158 ALA H 160 5 3 HELIX 8 AA8 SER H 190 GLN H 195 1 6 HELIX 9 AA9 SER T 27 ASP T 42 1 16 HELIX 10 AB1 ASP T 48 PHE T 60 1 13 HELIX 11 AB2 PHE T 121 ASP T 136 1 16 HELIX 12 AB3 ASP T 136 MET T 146 1 11 HELIX 13 AB4 ASN T 147 GLN T 167 1 21 SHEET 1 AA1 4 LEU L 4 SER L 7 0 SHEET 2 AA1 4 ALA L 19 ALA L 25 -1 O SER L 22 N SER L 7 SHEET 3 AA1 4 ASP L 70 ILE L 75 -1 O LEU L 73 N LEU L 21 SHEET 4 AA1 4 PHE L 62 SER L 67 -1 N SER L 65 O THR L 72 SHEET 1 AA2 6 THR L 10 LEU L 13 0 SHEET 2 AA2 6 THR L 102 PHE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA2 6 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 6 LEU L 33 HIS L 38 -1 N HIS L 38 O VAL L 85 SHEET 5 AA2 6 ARG L 45 TYR L 49 -1 O ARG L 45 N GLN L 37 SHEET 6 AA2 6 SER L 53 ARG L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA3 4 THR L 10 LEU L 13 0 SHEET 2 AA3 4 THR L 102 PHE L 106 1 O LYS L 103 N LEU L 11 SHEET 3 AA3 4 VAL L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA3 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AA4 4 SER L 114 PHE L 118 0 SHEET 2 AA4 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA4 4 TYR L 173 SER L 182 -1 O LEU L 175 N LEU L 136 SHEET 4 AA4 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA5 4 LEU L 154 GLN L 155 0 SHEET 2 AA5 4 LYS L 145 VAL L 150 -1 N TRP L 148 O GLN L 155 SHEET 3 AA5 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AA5 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA6 4 LEU H 4 GLN H 6 0 SHEET 2 AA6 4 LEU H 18 ALA H 24 -1 O LYS H 23 N VAL H 5 SHEET 3 AA6 4 THR H 77 MET H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA6 4 VAL H 67 ASP H 72 -1 N THR H 68 O GLU H 81 SHEET 1 AA7 6 GLU H 10 LYS H 12 0 SHEET 2 AA7 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 6 ALA H 88 ALA H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 6 LEU H 34 GLN H 39 -1 N VAL H 37 O PHE H 91 SHEET 5 AA7 6 LEU H 45 ILE H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA7 6 LEU H 56 TYR H 59 -1 O ASN H 58 N GLY H 50 SHEET 1 AA8 4 GLU H 10 LYS H 12 0 SHEET 2 AA8 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA8 4 ALA H 88 ALA H 97 -1 N TYR H 90 O THR H 107 SHEET 4 AA8 4 PRO H 100C TRP H 103 -1 O ALA H 100F N GLY H 96 SHEET 1 AA9 4 SER H 120 LEU H 124 0 SHEET 2 AA9 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 AA9 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 144 SHEET 4 AA9 4 VAL H 165 THR H 167 -1 N HIS H 166 O VAL H 184 SHEET 1 AB1 4 SER H 120 LEU H 124 0 SHEET 2 AB1 4 THR H 137 TYR H 147 -1 O LEU H 143 N PHE H 122 SHEET 3 AB1 4 TYR H 179 PRO H 188 -1 O LEU H 181 N VAL H 144 SHEET 4 AB1 4 VAL H 171 LEU H 172 -1 N VAL H 171 O SER H 180 SHEET 1 AB2 3 THR H 153 TRP H 156 0 SHEET 2 AB2 3 TYR H 197 HIS H 203 -1 O ASN H 200 N SER H 155 SHEET 3 AB2 3 THR H 208 VAL H 214 -1 O VAL H 210 N VAL H 201 SHEET 1 AB3 5 ARG T 20 LEU T 22 0 SHEET 2 AB3 5 ALA T 85 PHE T 97 1 O ILE T 90 N LEU T 22 SHEET 3 AB3 5 VAL T 107 ALA T 116 -1 O MET T 114 N SER T 87 SHEET 4 AB3 5 VAL T 71 ALA T 72 1 N ALA T 72 O PHE T 113 SHEET 5 AB3 5 GLY T 63 LEU T 64 -1 N LEU T 64 O VAL T 71 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.03 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 4 CYS H 142 CYS H 199 1555 1555 2.04 CISPEP 1 SER L 7 PRO L 8 0 -3.83 CISPEP 2 TYR L 140 PRO L 141 0 5.35 CISPEP 3 PHE H 148 PRO H 149 0 -6.31 CISPEP 4 GLU H 150 PRO H 151 0 -6.04 CRYST1 185.280 47.418 79.791 90.00 112.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005397 0.000000 0.002190 0.00000 SCALE2 0.000000 0.021089 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013525 0.00000