HEADER IMMUNE SYSTEM 21-OCT-18 6MTT TITLE CRYSTAL STRUCTURE OF VRC46.01 FAB IN COMPLEX WITH GP41 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTIBODY VRC46.01 FB LIGHT CHAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: ANTIBODY VRC46.01 FAB HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: RV217 FOUNDER VIRUS GP41 PEPTIDE; COMPND 11 CHAIN: P; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293F; SOURCE 15 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 16 EXPRESSION_SYSTEM_PLASMID: PVRC8400; SOURCE 17 MOL_ID: 3; SOURCE 18 SYNTHETIC: YES; SOURCE 19 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 20 ORGANISM_TAXID: 11676 KEYWDS ANTI-HIV-1 HUMAN ANTIBODY, MPER, GP41, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR Y.D.KWON,A.DRUZ,W.H.LAW,D.PENG,R.VERADI,N.A.DORIA-ROSE,P.D.KWONG REVDAT 3 03-APR-24 6MTT 1 REMARK REVDAT 2 04-DEC-19 6MTT 1 REMARK REVDAT 1 27-MAR-19 6MTT 0 JRNL AUTH S.J.KREBS,Y.D.KWON,C.A.SCHRAMM,W.H.LAW,G.DONOFRIO,K.H.ZHOU, JRNL AUTH 2 S.GIFT,V.DUSSUPT,I.S.GEORGIEV,S.SCHATZLE,J.R.MCDANIEL, JRNL AUTH 3 Y.T.LAI,M.SASTRY,B.ZHANG,M.C.JAROSINSKI,A.RANSIER, JRNL AUTH 4 A.L.CHENINE,M.ASOKAN,R.T.BAILER,M.BOSE,A.CAGIGI,E.M.CALE, JRNL AUTH 5 G.Y.CHUANG,S.DARKO,J.I.DRISCOLL,A.DRUZ,J.GORMAN,F.LABOUNE, JRNL AUTH 6 M.K.LOUDER,K.MCKEE,L.MENDEZ,M.A.MOODY,A.M.O'SULLIVAN,C.OWEN, JRNL AUTH 7 D.PENG,R.RAWI,E.SANDERS-BUELL,C.H.SHEN,A.R.SHIAKOLAS, JRNL AUTH 8 T.STEPHENS,Y.TSYBOVSKY,C.TUCKER,R.VERARDI,K.WANG,J.ZHOU, JRNL AUTH 9 T.ZHOU,G.GEORGIOU,S.M.ALAM,B.F.HAYNES,M.ROLLAND,G.R.MATYAS, JRNL AUTH10 V.R.POLONIS,A.B.MCDERMOTT,D.C.DOUEK,L.SHAPIRO,S.TOVANABUTRA, JRNL AUTH11 N.L.MICHAEL,J.R.MASCOLA,M.L.ROBB,P.D.KWONG,N.A.DORIA-ROSE JRNL TITL LONGITUDINAL ANALYSIS REVEALS EARLY DEVELOPMENT OF THREE JRNL TITL 2 MPER-DIRECTED NEUTRALIZING ANTIBODY LINEAGES FROM AN JRNL TITL 3 HIV-1-INFECTED INDIVIDUAL. JRNL REF IMMUNITY V. 50 677 2019 JRNL REFN ISSN 1097-4180 JRNL PMID 30876875 JRNL DOI 10.1016/J.IMMUNI.2019.02.008 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 62750 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.235 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2692 - 4.0960 0.90 4278 141 0.2275 0.2669 REMARK 3 2 4.0960 - 3.2515 0.97 4477 147 0.2161 0.2133 REMARK 3 3 3.2515 - 2.8406 0.98 4533 149 0.2284 0.2705 REMARK 3 4 2.8406 - 2.5810 0.99 4538 148 0.2411 0.3095 REMARK 3 5 2.5810 - 2.3960 0.99 4583 152 0.2461 0.2844 REMARK 3 6 2.3960 - 2.2547 0.99 4527 148 0.2420 0.2889 REMARK 3 7 2.2547 - 2.1418 0.99 4525 149 0.2387 0.2563 REMARK 3 8 2.1418 - 2.0486 0.99 4543 149 0.2486 0.2833 REMARK 3 9 2.0486 - 1.9697 0.98 4448 146 0.2510 0.2811 REMARK 3 10 1.9697 - 1.9018 0.97 4480 146 0.2638 0.2855 REMARK 3 11 1.9018 - 1.8423 0.95 4377 144 0.2708 0.3141 REMARK 3 12 1.8423 - 1.7896 0.92 4163 137 0.2919 0.3088 REMARK 3 13 1.7896 - 1.7425 0.86 3903 129 0.3075 0.2721 REMARK 3 14 1.7425 - 1.7000 0.74 3381 109 0.3330 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3496 REMARK 3 ANGLE : 0.755 4768 REMARK 3 CHIRALITY : 0.049 534 REMARK 3 PLANARITY : 0.005 599 REMARK 3 DIHEDRAL : 9.359 2051 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN H AND RESID 1:114 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8424 -12.2197 30.8982 REMARK 3 T TENSOR REMARK 3 T11: 0.4720 T22: 0.2943 REMARK 3 T33: 0.1980 T12: -0.0091 REMARK 3 T13: 0.0313 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.2768 L22: 1.7728 REMARK 3 L33: 3.9486 L12: 0.3366 REMARK 3 L13: 0.6899 L23: 0.9847 REMARK 3 S TENSOR REMARK 3 S11: -0.0610 S12: -0.1008 S13: -0.1611 REMARK 3 S21: 0.0254 S22: 0.1248 S23: -0.0891 REMARK 3 S31: 0.1018 S32: 0.1121 S33: -0.0626 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN L AND RESID 1:108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6862 7.2246 19.8988 REMARK 3 T TENSOR REMARK 3 T11: 0.4422 T22: 0.2423 REMARK 3 T33: 0.2722 T12: 0.0176 REMARK 3 T13: 0.0272 T23: -0.0187 REMARK 3 L TENSOR REMARK 3 L11: 0.8554 L22: 1.6993 REMARK 3 L33: 5.9290 L12: 0.1714 REMARK 3 L13: -0.9500 L23: -1.2505 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: -0.0320 S13: 0.2057 REMARK 3 S21: 0.0626 S22: 0.0540 S23: 0.0339 REMARK 3 S31: -0.2596 S32: -0.3720 S33: -0.1195 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN H AND RESID 125:224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.0797 -20.5083 -3.9420 REMARK 3 T TENSOR REMARK 3 T11: 0.3373 T22: 0.2089 REMARK 3 T33: 0.2590 T12: 0.0385 REMARK 3 T13: 0.0022 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 4.0718 L22: 3.7020 REMARK 3 L33: 5.0852 L12: 0.0384 REMARK 3 L13: -1.2280 L23: 0.1218 REMARK 3 S TENSOR REMARK 3 S11: 0.1494 S12: 0.4508 S13: 0.0257 REMARK 3 S21: -0.3269 S22: -0.1685 S23: -0.1855 REMARK 3 S31: 0.2998 S32: -0.0708 S33: 0.0403 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN L AND RESID 109:211 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.9504 -9.9440 -8.1459 REMARK 3 T TENSOR REMARK 3 T11: 0.3348 T22: 0.2533 REMARK 3 T33: 0.2263 T12: 0.0528 REMARK 3 T13: 0.0408 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 5.9687 L22: 5.5427 REMARK 3 L33: 1.8935 L12: 3.1975 REMARK 3 L13: 1.1037 L23: 0.5362 REMARK 3 S TENSOR REMARK 3 S11: 0.1234 S12: 0.0615 S13: 0.0177 REMARK 3 S21: -0.1217 S22: -0.1418 S23: 0.2213 REMARK 3 S31: 0.0126 S32: -0.1277 S33: 0.0085 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN P AND RESID 665:683 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.1476 -4.6473 44.6376 REMARK 3 T TENSOR REMARK 3 T11: 0.6498 T22: 0.4643 REMARK 3 T33: 0.1815 T12: 0.0965 REMARK 3 T13: 0.0550 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.8633 L22: 7.0385 REMARK 3 L33: 3.1534 L12: 3.6612 REMARK 3 L13: -2.0499 L23: -3.7817 REMARK 3 S TENSOR REMARK 3 S11: 0.2401 S12: -0.2706 S13: 0.0552 REMARK 3 S21: 0.1815 S22: -0.3030 S23: -0.0767 REMARK 3 S31: -0.2600 S32: 0.1154 S33: 0.0069 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MTT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237566. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62955 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.13400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: HOMOLOGY MODEL OF VRC46.01 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2M POTASSIUM IODIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.30100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.58100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.30100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.58100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19930 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 406 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY L 212 REMARK 465 GLU L 213 REMARK 465 CYS L 214 REMARK 465 ALA H 39A REMARK 465 PRO H 39B REMARK 465 ARG H 39C REMARK 465 HIS H 39D REMARK 465 ASN P 656 REMARK 465 GLU P 657 REMARK 465 LYS P 658 REMARK 465 GLU P 659 REMARK 465 LEU P 660 REMARK 465 LEU P 661 REMARK 465 GLU P 662 REMARK 465 LEU P 663 REMARK 465 ASP P 664 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP L 1 CG OD1 OD2 REMARK 470 LYS L 18 CG CD CE NZ REMARK 470 LYS L 190 CG CD CE NZ REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 VAL H 2 CG1 CG2 REMARK 470 GLN H 3 CG CD OE1 NE2 REMARK 470 LYS H 19 CG CD CE NZ REMARK 470 GLN H 61 CG CD OE1 NE2 REMARK 470 GLN H 64 CG CD OE1 NE2 REMARK 470 ARG H 105 CD NE CZ NH1 NH2 REMARK 470 LYS H 139 CG CD CE NZ REMARK 470 LYS H 211 CG CD CE NZ REMARK 470 LYS H 216 CG CD CE NZ REMARK 470 LYS H 224 CG CD CE NZ REMARK 470 LYS P 665 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH H 396 O HOH H 398 1.93 REMARK 500 O HOH L 370 O HOH L 437 1.96 REMARK 500 O THR H 28 O HOH H 301 1.98 REMARK 500 O HOH L 363 O HOH L 427 1.99 REMARK 500 O HOH L 342 O HOH L 346 2.04 REMARK 500 O HOH L 354 O HOH L 390 2.04 REMARK 500 O HOH L 304 O HOH L 425 2.05 REMARK 500 OG SER H 197 O HOH H 302 2.08 REMARK 500 O HOH H 351 O HOH H 390 2.08 REMARK 500 O HOH P 707 O HOH P 713 2.11 REMARK 500 O HOH L 399 O HOH L 409 2.11 REMARK 500 O HOH L 415 O HOH H 327 2.12 REMARK 500 O HOH P 710 O HOH P 714 2.12 REMARK 500 OD1 ASP L 185 O HOH L 301 2.12 REMARK 500 O HOH P 714 O HOH P 716 2.13 REMARK 500 O HOH L 418 O HOH L 434 2.14 REMARK 500 N GLY H 40 O HOH H 303 2.15 REMARK 500 OG SER H 7 O HOH H 304 2.15 REMARK 500 O HOH H 325 O HOH H 327 2.16 REMARK 500 NZ LYS H 219 O HOH H 305 2.18 REMARK 500 O HOH H 349 O HOH H 411 2.18 REMARK 500 O LYS P 683 O HOH P 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH L 315 O HOH H 403 1565 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER L 30 -127.07 52.24 REMARK 500 ALA L 51 -32.73 74.37 REMARK 500 SER L 52 -2.00 -142.17 REMARK 500 ASN L 138 70.90 54.61 REMARK 500 SER H 30 -132.81 53.14 REMARK 500 SER H 100A 136.76 -174.67 REMARK 500 ASP H 154 51.75 71.43 REMARK 500 THR H 170 -30.42 -130.17 REMARK 500 TRP P 666 28.83 -165.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 412 DISTANCE = 6.21 ANGSTROMS DBREF 6MTT L 1 214 PDB 6MTT 6MTT 1 214 DBREF 6MTT H 1 224 PDB 6MTT 6MTT 1 224 DBREF1 6MTT P 656 683 UNP A0A0U3UAX4_9HIV1 DBREF2 6MTT P A0A0U3UAX4 647 674 SEQRES 1 L 214 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP LYS VAL THR LEU THR CYS ARG SER SER SEQRES 3 L 214 GLN SER ILE SER ASN TYR LEU ASN TRP TYR GLN GLN THR SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS VAL LEU ILE TYR ALA ALA SER SEQRES 5 L 214 SER LEU GLN SER GLY VAL PRO SER ARG PHE SER GLY GLY SEQRES 6 L 214 GLY SER GLY THR ASP PHE THR LEU SER ILE SER GLY LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR PHE CYS GLN GLN SER SEQRES 8 L 214 TYR SER SER PRO TYR THR PHE GLY GLN GLY THR MET LEU SEQRES 9 L 214 GLU MET LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS SEQRES 1 H 224 GLN VAL GLN LEU VAL GLN SER GLY SER GLU VAL LYS LYS SEQRES 2 H 224 PRO GLY SER SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 224 GLY THR PHE SER THR TYR THR PHE SER TRP VAL ARG GLN SEQRES 4 H 224 ALA PRO ARG HIS GLY LEU GLU TRP LEU GLY GLY ILE LEU SEQRES 5 H 224 PRO LEU LEU ASN ILE ALA ASN TYR ALA GLN LYS PHE GLN SEQRES 6 H 224 GLY ARG VAL LYS PHE ALA ALA ASP LYS SER THR ASN MET SEQRES 7 H 224 ALA TYR MET GLU LEU SER GLY LEU ARG SER ASP ASP THR SEQRES 8 H 224 ALA VAL TYR TYR CYS ALA ARG HIS SER ASN SER TRP PHE SEQRES 9 H 224 SER PRO LYS TRP TYR PHE ASP VAL TRP GLY ARG GLY THR SEQRES 10 H 224 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 224 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 224 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 224 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 224 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 224 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 224 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 224 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 224 GLU PRO LYS SEQRES 1 P 28 ASN GLU LYS GLU LEU LEU GLU LEU ASP LYS TRP ALA SER SEQRES 2 P 28 LEU TRP ASN TRP PHE ASP ILE THR LYS TRP LEU TRP TYR SEQRES 3 P 28 ILE LYS FORMUL 4 HOH *273(H2 O) HELIX 1 AA1 GLN L 79 PHE L 83 5 5 HELIX 2 AA2 SER L 121 SER L 127 1 7 HELIX 3 AA3 LYS L 183 GLU L 187 1 5 HELIX 4 AA4 GLN H 61 GLN H 64 5 4 HELIX 5 AA5 ARG H 83 THR H 87 5 5 HELIX 6 AA6 SER H 137 THR H 141 5 5 HELIX 7 AA7 SER H 166 ALA H 168 5 3 HELIX 8 AA8 SER H 197 LEU H 199 5 3 HELIX 9 AA9 LYS H 211 ASN H 214 5 4 HELIX 10 AB1 LYS P 677 LYS P 683 1 7 SHEET 1 AA1 4 MET L 4 SER L 7 0 SHEET 2 AA1 4 LYS L 18 SER L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA1 4 ASP L 70 SER L 76 -1 O LEU L 73 N LEU L 21 SHEET 4 AA1 4 PHE L 62 GLY L 66 -1 N SER L 63 O SER L 74 SHEET 1 AA2 6 SER L 10 ALA L 13 0 SHEET 2 AA2 6 THR L 102 MET L 106 1 O GLU L 105 N LEU L 11 SHEET 3 AA2 6 THR L 85 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AA2 6 LEU L 33 GLN L 38 -1 N TYR L 36 O PHE L 87 SHEET 5 AA2 6 LYS L 45 TYR L 49 -1 O LEU L 47 N TRP L 35 SHEET 6 AA2 6 SER L 53 LEU L 54 -1 O SER L 53 N TYR L 49 SHEET 1 AA3 4 SER L 114 PHE L 118 0 SHEET 2 AA3 4 THR L 129 PHE L 139 -1 O LEU L 135 N PHE L 116 SHEET 3 AA3 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AA3 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AA4 4 ALA L 153 LEU L 154 0 SHEET 2 AA4 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AA4 4 VAL L 191 THR L 197 -1 O ALA L 193 N LYS L 149 SHEET 4 AA4 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 SER H 25 -1 O SER H 25 N GLN H 3 SHEET 3 AA5 4 MET H 77 LEU H 82 -1 O ALA H 78 N CYS H 22 SHEET 4 AA5 4 VAL H 67 ASP H 72 -1 N ASP H 72 O MET H 77 SHEET 1 AA6 4 GLU H 10 LYS H 12 0 SHEET 2 AA6 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA6 4 ALA H 88 HIS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA6 4 PHE H 100F TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA7 7 GLU H 10 LYS H 12 0 SHEET 2 AA7 7 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 7 ALA H 88 HIS H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 7 PHE H 34 GLN H 39 -1 N SER H 35 O ALA H 93 SHEET 5 AA7 7 GLU H 46 LEU H 52 -1 O GLY H 49 N TRP H 36 SHEET 6 AA7 7 ILE H 56 TYR H 59 -1 O ILE H 56 N LEU H 52 SHEET 7 AA7 7 SER P 668 LEU P 669 1 O SER P 668 N ALA H 57 SHEET 1 AA8 4 SER H 130 LEU H 134 0 SHEET 2 AA8 4 THR H 145 TYR H 155 -1 O GLY H 149 N LEU H 134 SHEET 3 AA8 4 TYR H 186 PRO H 195 -1 O VAL H 194 N ALA H 146 SHEET 4 AA8 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AA9 4 SER H 130 LEU H 134 0 SHEET 2 AA9 4 THR H 145 TYR H 155 -1 O GLY H 149 N LEU H 134 SHEET 3 AA9 4 TYR H 186 PRO H 195 -1 O VAL H 194 N ALA H 146 SHEET 4 AA9 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AB1 3 THR H 161 TRP H 164 0 SHEET 2 AB1 3 ILE H 205 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AB1 3 THR H 215 LYS H 220 -1 O VAL H 217 N VAL H 208 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.05 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.04 SSBOND 4 CYS H 150 CYS H 206 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -8.65 CISPEP 2 SER L 94 PRO L 95 0 -2.56 CISPEP 3 TYR L 140 PRO L 141 0 1.48 CISPEP 4 PHE H 156 PRO H 157 0 -5.10 CISPEP 5 GLU H 158 PRO H 159 0 -1.78 CRYST1 124.602 49.162 99.967 90.00 97.10 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008026 0.000000 0.001000 0.00000 SCALE2 0.000000 0.020341 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010081 0.00000