HEADER TRANSFERASE 22-OCT-18 6MTW TITLE LYSOSOMAL PHOSPHOLIPASE A2 IN COMPLEX WITH ZINC COMPND MOL_ID: 1; COMPND 2 MOLECULE: GROUP XV PHOSPHOLIPASE A2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 1-O-ACYLCERAMIDE SYNTHASE,ACS,LCAT-LIKE LYSOPHOSPHOLIPASE, COMPND 5 LLPL,LYSOPHOSPHOLIPASE 3,LYSOSOMAL PHOSPHOLIPASE A2,LPLA2; COMPND 6 EC: 2.3.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLA2G15, LYPLA3, UNQ341/PRO540; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293F KEYWDS LIPASE, ESTERASE, HYDROLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR R.BOULEY,J.J.G.TESMER REVDAT 6 11-OCT-23 6MTW 1 HETSYN REVDAT 5 29-JUL-20 6MTW 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 17-JUN-20 6MTW 1 AUTHOR REVDAT 3 04-DEC-19 6MTW 1 REMARK REVDAT 2 17-APR-19 6MTW 1 JRNL REVDAT 1 20-MAR-19 6MTW 0 JRNL AUTH R.A.BOULEY,V.HINKOVSKA-GALCHEVA,J.A.SHAYMAN,J.J.G.TESMER JRNL TITL STRUCTURAL BASIS OF LYSOSOMAL PHOSPHOLIPASE A2INHIBITION BY JRNL TITL 2 ZN2. JRNL REF BIOCHEMISTRY V. 58 1709 2019 JRNL REFN ISSN 1520-4995 JRNL PMID 30830753 JRNL DOI 10.1021/ACS.BIOCHEM.8B01124 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.13_2998: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 57821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.249 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.450 REMARK 3 FREE R VALUE TEST SET COUNT : 3953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.3442 - 6.0624 0.99 3975 134 0.2342 0.2613 REMARK 3 2 6.0624 - 4.8147 0.98 3988 141 0.2144 0.2574 REMARK 3 3 4.8147 - 4.2068 1.00 3961 127 0.1944 0.2257 REMARK 3 4 4.2068 - 3.8226 1.00 3995 150 0.1996 0.2109 REMARK 3 5 3.8226 - 3.5488 1.00 4003 144 0.2241 0.2638 REMARK 3 6 3.5488 - 3.3397 1.00 4028 140 0.2320 0.2593 REMARK 3 7 3.3397 - 3.1725 1.00 4000 152 0.2440 0.2844 REMARK 3 8 3.1725 - 3.0344 1.00 3987 142 0.2713 0.3032 REMARK 3 9 3.0344 - 2.9177 1.00 3978 144 0.2675 0.3258 REMARK 3 10 2.9177 - 2.8170 0.96 3810 141 0.2596 0.2781 REMARK 3 11 2.8170 - 2.7289 0.99 3967 140 0.2652 0.3748 REMARK 3 12 2.7289 - 2.6510 0.99 4004 140 0.2585 0.3218 REMARK 3 13 2.6510 - 2.5812 0.99 3984 144 0.2559 0.2866 REMARK 3 14 2.5812 - 2.5182 0.99 3970 143 0.2469 0.2914 REMARK 3 15 2.5182 - 2.4610 0.99 4007 144 0.2643 0.3024 REMARK 3 16 2.4610 - 2.4086 1.00 3934 134 0.2630 0.3213 REMARK 3 17 2.4086 - 2.3604 1.00 3991 142 0.2760 0.3126 REMARK 3 18 2.3604 - 2.3159 1.00 4065 146 0.2731 0.3089 REMARK 3 19 2.3159 - 2.2745 1.00 3976 142 0.2800 0.2800 REMARK 3 20 2.2745 - 2.2360 1.00 4009 148 0.3438 0.3702 REMARK 3 21 2.2360 - 2.1999 1.00 4034 146 0.3083 0.3643 REMARK 3 22 2.1999 - 2.1661 1.00 3913 140 0.2966 0.3820 REMARK 3 23 2.1661 - 2.1342 1.00 4041 140 0.2900 0.3225 REMARK 3 24 2.1342 - 2.1042 1.00 3923 145 0.2933 0.3755 REMARK 3 25 2.1042 - 2.0757 1.00 4075 154 0.3092 0.3286 REMARK 3 26 2.0757 - 2.0488 0.98 3944 139 0.3148 0.2824 REMARK 3 27 2.0488 - 2.0232 0.95 3711 128 0.3110 0.3385 REMARK 3 28 2.0232 - 1.9990 0.87 3491 123 0.3372 0.3940 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6280 REMARK 3 ANGLE : 0.637 8568 REMARK 3 CHIRALITY : 0.045 926 REMARK 3 PLANARITY : 0.005 1100 REMARK 3 DIHEDRAL : 15.016 3672 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN B AND ( RESID 4:379 OR RESID 401:407 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 91.8953 171.9136 -45.0195 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.1953 REMARK 3 T33: 0.2788 T12: -0.0177 REMARK 3 T13: -0.0141 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 1.3957 L22: 1.3588 REMARK 3 L33: 1.0540 L12: -0.1855 REMARK 3 L13: -0.4414 L23: -0.2212 REMARK 3 S TENSOR REMARK 3 S11: 0.0091 S12: 0.0472 S13: -0.0541 REMARK 3 S21: -0.0544 S22: -0.0089 S23: -0.1656 REMARK 3 S31: 0.0677 S32: 0.0741 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 4:379 OR RESID 401:407 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 68.0148 164.5460 5.2575 REMARK 3 T TENSOR REMARK 3 T11: 0.1868 T22: 0.2317 REMARK 3 T33: 0.2913 T12: 0.0078 REMARK 3 T13: -0.0008 T23: 0.0120 REMARK 3 L TENSOR REMARK 3 L11: 0.9525 L22: 1.2279 REMARK 3 L33: 1.1374 L12: -0.0795 REMARK 3 L13: 0.3168 L23: 0.3205 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.0497 S13: 0.1918 REMARK 3 S21: 0.0669 S22: -0.0009 S23: 0.0260 REMARK 3 S31: -0.0755 S32: -0.0216 S33: 0.0131 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 501:674 ) OR ( CHAIN B AND RESID REMARK 3 501:668 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.1536 168.0364 -19.9279 REMARK 3 T TENSOR REMARK 3 T11: 0.2149 T22: 0.2339 REMARK 3 T33: 0.3072 T12: 0.0172 REMARK 3 T13: -0.0227 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2720 L22: 0.0915 REMARK 3 L33: 0.7727 L12: 0.0048 REMARK 3 L13: -0.4565 L23: -0.0093 REMARK 3 S TENSOR REMARK 3 S11: -0.0025 S12: -0.0293 S13: 0.0225 REMARK 3 S21: -0.0097 S22: -0.0058 S23: -0.0399 REMARK 3 S31: -0.0612 S32: 0.0737 S33: -0.0064 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000235920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 0.5.546 REMARK 200 DATA SCALING SOFTWARE : XIA2 0.5.546 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57874 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.999 REMARK 200 RESOLUTION RANGE LOW (A) : 39.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.9400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.460 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4X90 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 5.6, 6% REMARK 280 ISOPROPANOL, 250 MM ZINC ACETATE, 2 MM 1-HYDROXY-2-AZELAOYL-SN- REMARK 280 GLYCERO-3-PHOSPHOCHOLINE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.28350 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.41239 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.24800 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 42.28350 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 24.41239 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.24800 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 42.28350 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 24.41239 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 107.24800 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 48.82478 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 214.49600 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 48.82478 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 214.49600 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 48.82478 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 214.49600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 ALA A 1 REMARK 465 GLY A 2 REMARK 465 ARG A 3 REMARK 465 GLY B 0 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ARG B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 308 O HOH A 501 2.11 REMARK 500 OG SER B 308 O HOH B 501 2.13 REMARK 500 OD2 ASP A 23 O HOH A 502 2.19 REMARK 500 O HOH B 636 O HOH B 658 2.19 REMARK 500 OH TYR A 39 OD2 ASP A 79 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 57.09 -150.71 REMARK 500 SER A 38 -159.59 -145.13 REMARK 500 LYS A 87 -167.86 -114.14 REMARK 500 TYR A 104 -85.74 -125.57 REMARK 500 GLU A 121 -96.11 -109.76 REMARK 500 SER A 165 -130.93 52.61 REMARK 500 PHE A 271 73.91 -150.53 REMARK 500 THR A 329 -50.06 -131.99 REMARK 500 ASP B 23 56.48 -149.55 REMARK 500 LYS B 87 -168.11 -113.98 REMARK 500 TYR B 104 -85.98 -124.97 REMARK 500 GLU B 121 -95.63 -109.69 REMARK 500 SER B 165 -131.03 53.12 REMARK 500 PHE B 271 74.83 -150.13 REMARK 500 THR B 329 -50.46 -131.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 CYS A 322 SG 43.9 REMARK 620 3 HOH A 659 O 45.4 4.1 REMARK 620 4 HOH A 664 O 42.9 2.6 2.9 REMARK 620 5 HOH A 671 O 43.1 1.7 5.7 3.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 110 OE2 REMARK 620 2 ASP A 307 OD1 80.7 REMARK 620 3 CYS A 322 SG 84.7 5.0 REMARK 620 4 HOH A 501 O 82.9 2.2 3.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 165 OG REMARK 620 2 HIS A 359 NE2 116.3 REMARK 620 3 HOH A 594 O 109.5 104.7 REMARK 620 4 HOH A 647 O 99.1 106.8 121.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 501 O REMARK 620 2 HOH A 652 O 126.0 REMARK 620 3 HOH A 661 O 106.1 95.0 REMARK 620 4 HOH A 671 O 86.1 107.7 140.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 106 NE2 REMARK 620 2 CYS B 322 SG 44.1 REMARK 620 3 HOH B 658 O 43.2 2.7 REMARK 620 4 HOH B 667 O 43.4 1.8 4.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 110 OE2 REMARK 620 2 ASP B 307 OD1 82.8 REMARK 620 3 CYS B 322 SG 86.7 5.0 REMARK 620 4 HOH B 501 O 84.5 1.7 3.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 165 OG REMARK 620 2 HIS B 359 NE2 115.4 REMARK 620 3 HOH B 605 O 113.3 107.0 REMARK 620 4 HOH B 641 O 102.5 104.8 113.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 407 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 501 O REMARK 620 2 HOH B 652 O 106.1 REMARK 620 3 HOH B 653 O 115.4 99.4 REMARK 620 4 HOH B 667 O 93.9 146.5 95.8 REMARK 620 N 1 2 3 DBREF 6MTW A 1 379 UNP Q8NCC3 PAG15_HUMAN 34 412 DBREF 6MTW B 1 379 UNP Q8NCC3 PAG15_HUMAN 34 412 SEQADV 6MTW GLY A 0 UNP Q8NCC3 EXPRESSION TAG SEQADV 6MTW GLY B 0 UNP Q8NCC3 EXPRESSION TAG SEQRES 1 A 380 GLY ALA GLY ARG HIS PRO PRO VAL VAL LEU VAL PRO GLY SEQRES 2 A 380 ASP LEU GLY ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO SEQRES 3 A 380 THR VAL VAL HIS TYR LEU CYS SER LYS LYS THR GLU SER SEQRES 4 A 380 TYR PHE THR ILE TRP LEU ASN LEU GLU LEU LEU LEU PRO SEQRES 5 A 380 VAL ILE ILE ASP CYS TRP ILE ASP ASN ILE ARG LEU VAL SEQRES 6 A 380 TYR ASN LYS THR SER ARG ALA THR GLN PHE PRO ASP GLY SEQRES 7 A 380 VAL ASP VAL ARG VAL PRO GLY PHE GLY LYS THR PHE SER SEQRES 8 A 380 LEU GLU PHE LEU ASP PRO SER LYS SER SER VAL GLY SER SEQRES 9 A 380 TYR PHE HIS THR MET VAL GLU SER LEU VAL GLY TRP GLY SEQRES 10 A 380 TYR THR ARG GLY GLU ASP VAL ARG GLY ALA PRO TYR ASP SEQRES 11 A 380 TRP ARG ARG ALA PRO ASN GLU ASN GLY PRO TYR PHE LEU SEQRES 12 A 380 ALA LEU ARG GLU MET ILE GLU GLU MET TYR GLN LEU TYR SEQRES 13 A 380 GLY GLY PRO VAL VAL LEU VAL ALA HIS SER MET GLY ASN SEQRES 14 A 380 MET TYR THR LEU TYR PHE LEU GLN ARG GLN PRO GLN ALA SEQRES 15 A 380 TRP LYS ASP LYS TYR ILE ARG ALA PHE VAL SER LEU GLY SEQRES 16 A 380 ALA PRO TRP GLY GLY VAL ALA LYS THR LEU ARG VAL LEU SEQRES 17 A 380 ALA SER GLY ASP ASN ASN ARG ILE PRO VAL ILE GLY PRO SEQRES 18 A 380 LEU LYS ILE ARG GLU GLN GLN ARG SER ALA VAL SER THR SEQRES 19 A 380 SER TRP LEU LEU PRO TYR ASN TYR THR TRP SER PRO GLU SEQRES 20 A 380 LYS VAL PHE VAL GLN THR PRO THR ILE ASN TYR THR LEU SEQRES 21 A 380 ARG ASP TYR ARG LYS PHE PHE GLN ASP ILE GLY PHE GLU SEQRES 22 A 380 ASP GLY TRP LEU MET ARG GLN ASP THR GLU GLY LEU VAL SEQRES 23 A 380 GLU ALA THR MET PRO PRO GLY VAL GLN LEU HIS CYS LEU SEQRES 24 A 380 TYR GLY THR GLY VAL PRO THR PRO ASP SER PHE TYR TYR SEQRES 25 A 380 GLU SER PHE PRO ASP ARG ASP PRO LYS ILE CYS PHE GLY SEQRES 26 A 380 ASP GLY ASP GLY THR VAL ASN LEU LYS SER ALA LEU GLN SEQRES 27 A 380 CYS GLN ALA TRP GLN SER ARG GLN GLU HIS GLN VAL LEU SEQRES 28 A 380 LEU GLN GLU LEU PRO GLY SER GLU HIS ILE GLU MET LEU SEQRES 29 A 380 ALA ASN ALA THR THR LEU ALA TYR LEU LYS ARG VAL LEU SEQRES 30 A 380 LEU GLY PRO SEQRES 1 B 380 GLY ALA GLY ARG HIS PRO PRO VAL VAL LEU VAL PRO GLY SEQRES 2 B 380 ASP LEU GLY ASN GLN LEU GLU ALA LYS LEU ASP LYS PRO SEQRES 3 B 380 THR VAL VAL HIS TYR LEU CYS SER LYS LYS THR GLU SER SEQRES 4 B 380 TYR PHE THR ILE TRP LEU ASN LEU GLU LEU LEU LEU PRO SEQRES 5 B 380 VAL ILE ILE ASP CYS TRP ILE ASP ASN ILE ARG LEU VAL SEQRES 6 B 380 TYR ASN LYS THR SER ARG ALA THR GLN PHE PRO ASP GLY SEQRES 7 B 380 VAL ASP VAL ARG VAL PRO GLY PHE GLY LYS THR PHE SER SEQRES 8 B 380 LEU GLU PHE LEU ASP PRO SER LYS SER SER VAL GLY SER SEQRES 9 B 380 TYR PHE HIS THR MET VAL GLU SER LEU VAL GLY TRP GLY SEQRES 10 B 380 TYR THR ARG GLY GLU ASP VAL ARG GLY ALA PRO TYR ASP SEQRES 11 B 380 TRP ARG ARG ALA PRO ASN GLU ASN GLY PRO TYR PHE LEU SEQRES 12 B 380 ALA LEU ARG GLU MET ILE GLU GLU MET TYR GLN LEU TYR SEQRES 13 B 380 GLY GLY PRO VAL VAL LEU VAL ALA HIS SER MET GLY ASN SEQRES 14 B 380 MET TYR THR LEU TYR PHE LEU GLN ARG GLN PRO GLN ALA SEQRES 15 B 380 TRP LYS ASP LYS TYR ILE ARG ALA PHE VAL SER LEU GLY SEQRES 16 B 380 ALA PRO TRP GLY GLY VAL ALA LYS THR LEU ARG VAL LEU SEQRES 17 B 380 ALA SER GLY ASP ASN ASN ARG ILE PRO VAL ILE GLY PRO SEQRES 18 B 380 LEU LYS ILE ARG GLU GLN GLN ARG SER ALA VAL SER THR SEQRES 19 B 380 SER TRP LEU LEU PRO TYR ASN TYR THR TRP SER PRO GLU SEQRES 20 B 380 LYS VAL PHE VAL GLN THR PRO THR ILE ASN TYR THR LEU SEQRES 21 B 380 ARG ASP TYR ARG LYS PHE PHE GLN ASP ILE GLY PHE GLU SEQRES 22 B 380 ASP GLY TRP LEU MET ARG GLN ASP THR GLU GLY LEU VAL SEQRES 23 B 380 GLU ALA THR MET PRO PRO GLY VAL GLN LEU HIS CYS LEU SEQRES 24 B 380 TYR GLY THR GLY VAL PRO THR PRO ASP SER PHE TYR TYR SEQRES 25 B 380 GLU SER PHE PRO ASP ARG ASP PRO LYS ILE CYS PHE GLY SEQRES 26 B 380 ASP GLY ASP GLY THR VAL ASN LEU LYS SER ALA LEU GLN SEQRES 27 B 380 CYS GLN ALA TRP GLN SER ARG GLN GLU HIS GLN VAL LEU SEQRES 28 B 380 LEU GLN GLU LEU PRO GLY SER GLU HIS ILE GLU MET LEU SEQRES 29 B 380 ALA ASN ALA THR THR LEU ALA TYR LEU LYS ARG VAL LEU SEQRES 30 B 380 LEU GLY PRO HET NAG A 401 14 HET NAG A 402 14 HET CL A 403 1 HET ZN A 404 1 HET ZN A 405 1 HET ZN A 406 1 HET ZN A 407 1 HET NAG B 401 14 HET NAG B 402 14 HET CL B 403 1 HET ZN B 404 1 HET ZN B 405 1 HET ZN B 406 1 HET ZN B 407 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM ZN ZINC ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 5 CL 2(CL 1-) FORMUL 6 ZN 8(ZN 2+) FORMUL 17 HOH *342(H2 O) HELIX 1 AA1 ASN A 45 LEU A 50 5 6 HELIX 2 AA2 ILE A 53 ARG A 62 1 10 HELIX 3 AA3 THR A 88 PHE A 93 1 6 HELIX 4 AA4 PHE A 105 TRP A 115 1 11 HELIX 5 AA5 ALA A 133 GLU A 136 5 4 HELIX 6 AA6 ASN A 137 GLY A 156 1 20 HELIX 7 AA7 MET A 166 GLN A 178 1 13 HELIX 8 AA8 PRO A 179 TYR A 186 1 8 HELIX 9 AA9 ALA A 201 GLY A 210 1 10 HELIX 10 AB1 GLY A 219 ALA A 230 1 12 HELIX 11 AB2 ALA A 230 LEU A 236 1 7 HELIX 12 AB3 THR A 258 ARG A 260 5 3 HELIX 13 AB4 ASP A 261 ILE A 269 1 9 HELIX 14 AB5 GLU A 272 GLU A 282 1 11 HELIX 15 AB6 ASN A 331 LYS A 333 5 3 HELIX 16 AB7 SER A 334 TRP A 341 1 8 HELIX 17 AB8 GLN A 342 GLN A 345 5 4 HELIX 18 AB9 ILE A 360 ALA A 364 5 5 HELIX 19 AC1 ASN A 365 GLY A 378 1 14 HELIX 20 AC2 ASN B 45 LEU B 50 5 6 HELIX 21 AC3 ILE B 53 ARG B 62 1 10 HELIX 22 AC4 THR B 88 PHE B 93 1 6 HELIX 23 AC5 PHE B 105 TRP B 115 1 11 HELIX 24 AC6 ALA B 133 GLU B 136 5 4 HELIX 25 AC7 ASN B 137 GLY B 156 1 20 HELIX 26 AC8 MET B 166 GLN B 178 1 13 HELIX 27 AC9 PRO B 179 TYR B 186 1 8 HELIX 28 AD1 ALA B 201 GLY B 210 1 10 HELIX 29 AD2 GLY B 219 ALA B 230 1 12 HELIX 30 AD3 ALA B 230 LEU B 236 1 7 HELIX 31 AD4 THR B 258 ARG B 260 5 3 HELIX 32 AD5 ASP B 261 ILE B 269 1 9 HELIX 33 AD6 GLU B 272 GLU B 282 1 11 HELIX 34 AD7 ASN B 331 LYS B 333 5 3 HELIX 35 AD8 SER B 334 TRP B 341 1 8 HELIX 36 AD9 ILE B 360 ALA B 364 5 5 HELIX 37 AE1 ASN B 365 GLY B 378 1 14 SHEET 1 AA1 6 VAL A 123 GLY A 125 0 SHEET 2 AA1 6 VAL A 7 VAL A 10 1 N LEU A 9 O ARG A 124 SHEET 3 AA1 6 VAL A 159 HIS A 164 1 O VAL A 162 N VAL A 8 SHEET 4 AA1 6 ILE A 187 LEU A 193 1 O VAL A 191 N LEU A 161 SHEET 5 AA1 6 LEU A 295 THR A 301 1 O HIS A 296 N SER A 192 SHEET 6 AA1 6 VAL A 349 PRO A 355 1 O LEU A 350 N LEU A 295 SHEET 1 AA2 3 PHE A 40 TRP A 43 0 SHEET 2 AA2 3 LEU A 18 LEU A 22 -1 N ALA A 20 O PHE A 40 SHEET 3 AA2 3 VAL A 78 ARG A 81 -1 O ASP A 79 N LYS A 21 SHEET 1 AA3 2 VAL A 64 ASN A 66 0 SHEET 2 AA3 2 ALA A 71 GLN A 73 -1 O GLN A 73 N VAL A 64 SHEET 1 AA4 4 ASN A 256 TYR A 257 0 SHEET 2 AA4 4 VAL A 250 GLN A 251 -1 N VAL A 250 O TYR A 257 SHEET 3 AA4 4 THR A 305 TYR A 310 1 O PHE A 309 N GLN A 251 SHEET 4 AA4 4 LYS A 320 GLY A 324 -1 O GLY A 324 N THR A 305 SHEET 1 AA5 6 VAL B 123 GLY B 125 0 SHEET 2 AA5 6 VAL B 7 VAL B 10 1 N LEU B 9 O ARG B 124 SHEET 3 AA5 6 VAL B 159 HIS B 164 1 O VAL B 162 N VAL B 10 SHEET 4 AA5 6 ILE B 187 LEU B 193 1 O VAL B 191 N LEU B 161 SHEET 5 AA5 6 LEU B 295 THR B 301 1 O HIS B 296 N SER B 192 SHEET 6 AA5 6 VAL B 349 PRO B 355 1 O LEU B 350 N CYS B 297 SHEET 1 AA6 3 PHE B 40 TRP B 43 0 SHEET 2 AA6 3 LEU B 18 LEU B 22 -1 N ALA B 20 O PHE B 40 SHEET 3 AA6 3 VAL B 78 ARG B 81 -1 O ASP B 79 N LYS B 21 SHEET 1 AA7 2 VAL B 64 ASN B 66 0 SHEET 2 AA7 2 ALA B 71 GLN B 73 -1 O GLN B 73 N VAL B 64 SHEET 1 AA8 4 ASN B 256 TYR B 257 0 SHEET 2 AA8 4 VAL B 250 GLN B 251 -1 N VAL B 250 O TYR B 257 SHEET 3 AA8 4 THR B 305 TYR B 310 1 O PHE B 309 N GLN B 251 SHEET 4 AA8 4 LYS B 320 GLY B 324 -1 O GLY B 324 N THR B 305 SSBOND 1 CYS A 32 CYS A 56 1555 1555 2.03 SSBOND 2 CYS A 297 CYS A 338 1555 1555 2.03 SSBOND 3 CYS B 32 CYS B 56 1555 1555 2.03 SSBOND 4 CYS B 297 CYS B 338 1555 1555 2.03 LINK ND2 ASN A 66 C1 NAG A 401 1555 1555 1.44 LINK ND2 ASN A 365 C1 NAG A 402 1555 1555 1.43 LINK ND2 ASN B 66 C1 NAG B 401 1555 1555 1.44 LINK ND2 ASN B 365 C1 NAG B 402 1555 1555 1.43 LINK NE2 HIS A 106 ZN ZN A 405 1555 3695 2.07 LINK OE2 GLU A 110 ZN ZN A 406 1555 3695 2.02 LINK OG SER A 165 ZN ZN A 404 1555 1555 1.96 LINK OD1 ASP A 307 ZN ZN A 406 1555 1555 2.06 LINK SG CYS A 322 ZN ZN A 405 1555 1555 2.32 LINK SG CYS A 322 ZN ZN A 406 1555 1555 2.27 LINK NE2 HIS A 359 ZN ZN A 404 1555 1555 2.07 LINK ZN ZN A 404 O HOH A 594 1555 1555 2.01 LINK ZN ZN A 404 O HOH A 647 1555 1555 2.32 LINK ZN ZN A 405 O HOH A 659 1555 1555 2.59 LINK ZN ZN A 405 O HOH A 664 1555 1555 1.93 LINK ZN ZN A 405 O HOH A 671 1555 1555 1.92 LINK ZN ZN A 406 O HOH A 501 1555 1555 2.18 LINK ZN ZN A 407 O HOH A 501 1555 1555 1.92 LINK ZN ZN A 407 O HOH A 652 1555 1555 2.13 LINK ZN ZN A 407 O HOH A 661 1555 1555 2.01 LINK ZN ZN A 407 O HOH A 671 1555 1555 1.98 LINK NE2 HIS B 106 ZN ZN B 405 1555 2975 2.10 LINK OE2 GLU B 110 ZN ZN B 406 1555 2975 2.08 LINK OG SER B 165 ZN ZN B 404 1555 1555 1.98 LINK OD1 ASP B 307 ZN ZN B 406 1555 1555 2.09 LINK SG CYS B 322 ZN ZN B 405 1555 1555 2.32 LINK SG CYS B 322 ZN ZN B 406 1555 1555 2.24 LINK NE2 HIS B 359 ZN ZN B 404 1555 1555 2.09 LINK ZN ZN B 404 O HOH B 605 1555 1555 1.94 LINK ZN ZN B 404 O HOH B 641 1555 1555 2.30 LINK ZN ZN B 405 O HOH B 658 1555 1555 1.94 LINK ZN ZN B 405 O HOH B 667 1555 1555 1.91 LINK ZN ZN B 406 O HOH B 501 1555 1555 2.00 LINK ZN ZN B 407 O HOH B 501 1555 1555 1.95 LINK ZN ZN B 407 O HOH B 652 1555 1555 2.02 LINK ZN ZN B 407 O HOH B 653 1555 1555 2.05 LINK ZN ZN B 407 O HOH B 667 1555 1555 2.00 CISPEP 1 TRP A 43 LEU A 44 0 -6.34 CISPEP 2 PHE A 314 PRO A 315 0 -4.13 CISPEP 3 TRP B 43 LEU B 44 0 -6.01 CISPEP 4 PHE B 314 PRO B 315 0 -3.86 CRYST1 84.567 84.567 321.744 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011825 0.006827 0.000000 0.00000 SCALE2 0.000000 0.013654 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003108 0.00000