HEADER CALCIUM BINDING/TRANSPORT PROTEIN 23-OCT-18 6MUD TITLE VOLTAGE-GATED SODIUM CHANNEL NAV1.5 C-TERMINAL DOMAIN IN COMPLEX WITH TITLE 2 CA2+/CALMODULIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALMODULIN-1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SODIUM CHANNEL PROTEIN TYPE 5 SUBUNIT ALPHA; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: HH1,SODIUM CHANNEL PROTEIN CARDIAC MUSCLE SUBUNIT ALPHA, COMPND 9 SODIUM CHANNEL PROTEIN TYPE V SUBUNIT ALPHA,VOLTAGE-GATED SODIUM COMPND 10 CHANNEL SUBUNIT ALPHA NAV1.5; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CALM1, CALM, CAM, CAM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: SCN5A; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VOLTAGE-GATED ION CHANNEL, TRANSPORT PROTEIN, EF-HAND DOMAIN, CALCIUM KEYWDS 2 BINDING-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.R.GARDILL,C.C.TUNG,F.VAN PETEGEM REVDAT 5 13-MAR-24 6MUD 1 REMARK REVDAT 4 08-JAN-20 6MUD 1 REMARK REVDAT 3 12-JUN-19 6MUD 1 JRNL REVDAT 2 22-MAY-19 6MUD 1 JRNL REVDAT 1 08-MAY-19 6MUD 0 JRNL AUTH B.R.GARDILL,R.E.RIVERA-ACEVEDO,C.C.TUNG,F.VAN PETEGEM JRNL TITL CRYSTAL STRUCTURES OF CA2+-CALMODULIN BOUND TO NAVC-TERMINAL JRNL TITL 2 REGIONS SUGGEST ROLE FOR EF-HAND DOMAIN IN BINDING AND JRNL TITL 3 INACTIVATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 116 10763 2019 JRNL REFN ESSN 1091-6490 JRNL PMID 31072926 JRNL DOI 10.1073/PNAS.1818618116 REMARK 2 REMARK 2 RESOLUTION. 2.69 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0222 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.69 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.31 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 10016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.400 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.69 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 REFLECTION IN BIN (WORKING SET) : 601 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 75.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.4300 REMARK 3 BIN FREE R VALUE SET COUNT : 10 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2203 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 15 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.54000 REMARK 3 B22 (A**2) : -3.79000 REMARK 3 B33 (A**2) : 6.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.849 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.354 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 35.519 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2246 ; 0.007 ; 0.014 REMARK 3 BOND LENGTHS OTHERS (A): 1990 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3017 ; 1.055 ; 1.660 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4684 ; 0.813 ; 1.641 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 274 ; 6.089 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 138 ;31.882 ;23.478 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 423 ;19.353 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;24.758 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2535 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 397 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 64 REMARK 3 ORIGIN FOR THE GROUP (A): -6.932 -6.521 -37.752 REMARK 3 T TENSOR REMARK 3 T11: 0.1355 T22: 0.0081 REMARK 3 T33: 0.4552 T12: -0.0071 REMARK 3 T13: 0.0030 T23: -0.0316 REMARK 3 L TENSOR REMARK 3 L11: 5.4134 L22: 2.2341 REMARK 3 L33: 2.0475 L12: -1.0149 REMARK 3 L13: 2.0029 L23: -0.9614 REMARK 3 S TENSOR REMARK 3 S11: -0.2388 S12: -0.1459 S13: 0.2982 REMARK 3 S21: 0.1558 S22: 0.0043 S23: -0.2223 REMARK 3 S31: -0.0195 S32: -0.0992 S33: 0.2346 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 65 A 147 REMARK 3 ORIGIN FOR THE GROUP (A): -30.552 11.441 -24.863 REMARK 3 T TENSOR REMARK 3 T11: 0.1982 T22: 0.2013 REMARK 3 T33: 0.4069 T12: -0.0737 REMARK 3 T13: -0.0365 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 2.7013 L22: 4.6351 REMARK 3 L33: 2.3536 L12: -2.6209 REMARK 3 L13: -1.7283 L23: 1.0259 REMARK 3 S TENSOR REMARK 3 S11: -0.0102 S12: -0.3799 S13: 0.2543 REMARK 3 S21: 0.5114 S22: 0.2829 S23: -0.3079 REMARK 3 S31: -0.0556 S32: 0.0434 S33: -0.2727 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1785 B 1801 REMARK 3 ORIGIN FOR THE GROUP (A): -32.826 22.420 -61.364 REMARK 3 T TENSOR REMARK 3 T11: 0.6273 T22: 0.5637 REMARK 3 T33: 0.5132 T12: -0.2205 REMARK 3 T13: 0.0382 T23: 0.1488 REMARK 3 L TENSOR REMARK 3 L11: 0.4455 L22: 7.7752 REMARK 3 L33: 4.4793 L12: 1.2657 REMARK 3 L13: 0.0770 L23: -3.8720 REMARK 3 S TENSOR REMARK 3 S11: -0.3757 S12: 0.3223 S13: 0.1221 REMARK 3 S21: -0.9804 S22: 0.3194 S23: 0.1037 REMARK 3 S31: -0.0260 S32: 0.3950 S33: 0.0563 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1802 B 1837 REMARK 3 ORIGIN FOR THE GROUP (A): -30.323 16.905 -51.248 REMARK 3 T TENSOR REMARK 3 T11: 0.2280 T22: 0.2500 REMARK 3 T33: 0.4305 T12: 0.0065 REMARK 3 T13: 0.0963 T23: 0.0711 REMARK 3 L TENSOR REMARK 3 L11: 4.7463 L22: 7.1684 REMARK 3 L33: 3.4803 L12: 2.5132 REMARK 3 L13: -0.6817 L23: 2.5468 REMARK 3 S TENSOR REMARK 3 S11: -0.2513 S12: 0.2543 S13: 0.0197 REMARK 3 S21: -0.4969 S22: 0.1744 S23: -0.4692 REMARK 3 S31: 0.0944 S32: 0.6271 S33: 0.0769 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1838 B 1862 REMARK 3 ORIGIN FOR THE GROUP (A): -38.931 18.067 -50.085 REMARK 3 T TENSOR REMARK 3 T11: 0.2245 T22: 0.2417 REMARK 3 T33: 0.2925 T12: -0.0134 REMARK 3 T13: -0.0007 T23: 0.0250 REMARK 3 L TENSOR REMARK 3 L11: 0.4497 L22: 9.3894 REMARK 3 L33: 1.0706 L12: 0.6882 REMARK 3 L13: -0.4129 L23: -0.1494 REMARK 3 S TENSOR REMARK 3 S11: -0.1891 S12: 0.1722 S13: 0.0183 REMARK 3 S21: -0.2902 S22: 0.1722 S23: -0.0773 REMARK 3 S31: 0.0435 S32: -0.1716 S33: 0.0169 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1863 B 1878 REMARK 3 ORIGIN FOR THE GROUP (A): -46.070 28.099 -56.039 REMARK 3 T TENSOR REMARK 3 T11: 0.1710 T22: 0.3169 REMARK 3 T33: 0.4344 T12: 0.1054 REMARK 3 T13: -0.0884 T23: -0.0288 REMARK 3 L TENSOR REMARK 3 L11: 0.0433 L22: 9.6717 REMARK 3 L33: 7.9802 L12: 0.3662 REMARK 3 L13: 0.4440 L23: -0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.0053 S13: 0.0562 REMARK 3 S21: -0.4013 S22: -0.0242 S23: 0.4986 REMARK 3 S31: -0.7038 S32: -0.1097 S33: 0.0820 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1887 B 1894 REMARK 3 ORIGIN FOR THE GROUP (A): -45.653 8.156 -49.658 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.2830 REMARK 3 T33: 0.3651 T12: -0.0817 REMARK 3 T13: 0.0516 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.6292 L22: 6.4448 REMARK 3 L33: 8.7070 L12: 0.6997 REMARK 3 L13: 3.6447 L23: -0.2780 REMARK 3 S TENSOR REMARK 3 S11: -0.0793 S12: 0.0913 S13: -0.0001 REMARK 3 S21: 0.0196 S22: 0.2011 S23: 0.4038 REMARK 3 S31: -0.1960 S32: 0.1659 S33: -0.1218 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1895 B 1920 REMARK 3 ORIGIN FOR THE GROUP (A): -31.521 5.311 -25.964 REMARK 3 T TENSOR REMARK 3 T11: 0.2249 T22: 0.1178 REMARK 3 T33: 0.3789 T12: -0.0373 REMARK 3 T13: -0.0347 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 1.3336 L22: 3.9651 REMARK 3 L33: 11.5792 L12: -2.0243 REMARK 3 L13: 3.8948 L23: -5.7806 REMARK 3 S TENSOR REMARK 3 S11: 0.0807 S12: 0.0839 S13: 0.1023 REMARK 3 S21: -0.0561 S22: -0.1919 S23: -0.2307 REMARK 3 S31: 0.4026 S32: 0.1923 S33: 0.1112 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 6MUD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237596. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.033000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : K-B PAIR OF BIMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 DATA SCALING SOFTWARE : XDS NOVEMBER 11, 2013 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10476 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.690 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 200 DATA REDUNDANCY : 3.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.39 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.890 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-15 % (W/V) PEG 4000, 0.1 M TRIS, PH REMARK 280 9.5, 0.1 M MGCL2, AND 5 % (V/V) ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.78950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.01600 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.34200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.78950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.01600 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.34200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.78950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.01600 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.34200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.78950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.01600 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.34200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -47.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 LYS A 148 REMARK 465 SER B 1783 REMARK 465 ASN B 1784 REMARK 465 PHE B 1879 REMARK 465 MET B 1880 REMARK 465 ALA B 1881 REMARK 465 ALA B 1882 REMARK 465 ASN B 1883 REMARK 465 PRO B 1884 REMARK 465 SER B 1885 REMARK 465 LYS B 1886 REMARK 465 LEU B 1921 REMARK 465 LYS B 1922 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 2 53.09 -108.53 REMARK 500 LYS A 115 172.17 -54.66 REMARK 500 ASP B1802 59.11 -145.35 REMARK 500 SER B1812 3.93 -64.98 REMARK 500 VAL B1843 -166.33 -75.91 REMARK 500 GLN B1918 33.81 -97.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 90 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 20 OD1 REMARK 620 2 ASP A 22 OD1 77.4 REMARK 620 3 ASP A 24 OD1 82.8 81.8 REMARK 620 4 THR A 26 O 88.1 162.4 86.5 REMARK 620 5 GLU A 31 OE1 123.2 120.3 147.4 76.1 REMARK 620 6 GLU A 31 OE2 94.3 73.5 155.1 118.1 51.7 REMARK 620 7 HOH A1107 O 157.3 102.5 74.8 87.0 76.9 107.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1002 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 56 OD1 REMARK 620 2 ASP A 58 OD1 72.7 REMARK 620 3 ASN A 60 OD1 93.0 85.0 REMARK 620 4 THR A 62 O 71.5 139.9 79.5 REMARK 620 5 GLU A 67 OE1 95.4 126.3 148.7 74.8 REMARK 620 6 GLU A 67 OE2 83.7 76.3 161.1 116.6 50.1 REMARK 620 7 HOH A1101 O 152.0 91.1 108.5 128.9 75.7 70.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1004 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 93 OD1 REMARK 620 2 ASP A 95 OD1 82.5 REMARK 620 3 ASN A 97 OD1 84.4 92.7 REMARK 620 4 TYR A 99 O 92.3 170.1 78.3 REMARK 620 5 GLU A 104 OE1 95.6 56.1 148.3 133.2 REMARK 620 6 GLU A 104 OE2 108.3 105.5 158.8 84.1 49.6 REMARK 620 7 HOH A1103 O 163.3 93.3 79.7 89.3 95.4 88.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1003 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 129 OD1 REMARK 620 2 ASP A 131 OD2 81.0 REMARK 620 3 ASP A 133 OD1 79.8 85.5 REMARK 620 4 GLN A 135 O 81.4 158.3 78.8 REMARK 620 5 GLU A 140 OE1 112.9 107.7 162.5 90.8 REMARK 620 6 GLU A 140 OE2 86.5 66.7 150.7 124.7 45.9 REMARK 620 7 HOH A1106 O 163.2 82.3 100.6 115.2 70.9 85.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 1004 DBREF 6MUD A 0 148 UNP P0DP23 CALM1_HUMAN 1 149 DBREF 6MUD B 1786 1922 UNP Q14524 SCN5A_HUMAN 1786 1922 SEQADV 6MUD SER B 1783 UNP Q14524 EXPRESSION TAG SEQADV 6MUD ASN B 1784 UNP Q14524 EXPRESSION TAG SEQADV 6MUD ALA B 1785 UNP Q14524 EXPRESSION TAG SEQRES 1 A 149 MET ALA ASP GLN LEU THR GLU GLU GLN ILE ALA GLU PHE SEQRES 2 A 149 LYS GLU ALA PHE SER LEU PHE ASP LYS ASP GLY ASP GLY SEQRES 3 A 149 THR ILE THR THR LYS GLU LEU GLY THR VAL MET ARG SER SEQRES 4 A 149 LEU GLY GLN ASN PRO THR GLU ALA GLU LEU GLN ASP MET SEQRES 5 A 149 ILE ASN GLU VAL ASP ALA ASP GLY ASN GLY THR ILE ASP SEQRES 6 A 149 PHE PRO GLU PHE LEU THR MET MET ALA ARG LYS MET LYS SEQRES 7 A 149 ASP THR ASP SER GLU GLU GLU ILE ARG GLU ALA PHE ARG SEQRES 8 A 149 VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE SER ALA ALA SEQRES 9 A 149 GLU LEU ARG HIS VAL MET THR ASN LEU GLY GLU LYS LEU SEQRES 10 A 149 THR ASP GLU GLU VAL ASP GLU MET ILE ARG GLU ALA ASP SEQRES 11 A 149 ILE ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU PHE VAL SEQRES 12 A 149 GLN MET MET THR ALA LYS SEQRES 1 B 140 SER ASN ALA LEU SER GLU ASP ASP PHE ASP MET PHE TYR SEQRES 2 B 140 GLU ILE TRP GLU LYS PHE ASP PRO GLU ALA THR GLN PHE SEQRES 3 B 140 ILE GLU TYR SER VAL LEU SER ASP PHE ALA ASP ALA LEU SEQRES 4 B 140 SER GLU PRO LEU ARG ILE ALA LYS PRO ASN GLN ILE SER SEQRES 5 B 140 LEU ILE ASN MET ASP LEU PRO MET VAL SER GLY ASP ARG SEQRES 6 B 140 ILE HIS CYS MET ASP ILE LEU PHE ALA PHE THR LYS ARG SEQRES 7 B 140 VAL LEU GLY GLU SER GLY GLU MET ASP ALA LEU LYS ILE SEQRES 8 B 140 GLN MET GLU GLU LYS PHE MET ALA ALA ASN PRO SER LYS SEQRES 9 B 140 ILE SER TYR GLU PRO ILE THR THR THR LEU ARG ARG LYS SEQRES 10 B 140 HIS GLU GLU VAL SER ALA MET VAL ILE GLN ARG ALA PHE SEQRES 11 B 140 ARG ARG HIS LEU LEU GLN ARG SER LEU LYS HET CA A1001 1 HET CA A1002 1 HET CA A1003 1 HET CA A1004 1 HETNAM CA CALCIUM ION FORMUL 3 CA 4(CA 2+) FORMUL 7 HOH *15(H2 O) HELIX 1 AA1 THR A 5 ASP A 20 1 16 HELIX 2 AA2 THR A 28 LEU A 39 1 12 HELIX 3 AA3 THR A 44 ASP A 56 1 13 HELIX 4 AA4 PHE A 65 ASP A 80 1 16 HELIX 5 AA5 ASP A 80 ASP A 93 1 14 HELIX 6 AA6 SER A 101 MET A 109 1 9 HELIX 7 AA7 THR A 117 ASP A 129 1 13 HELIX 8 AA8 ASN A 137 MET A 144 1 8 HELIX 9 AA9 SER B 1787 ASP B 1802 1 16 HELIX 10 AB1 VAL B 1813 LEU B 1821 1 9 HELIX 11 AB2 ASN B 1831 MET B 1838 1 8 HELIX 12 AB3 CYS B 1850 GLY B 1863 1 14 HELIX 13 AB4 SER B 1865 LYS B 1878 1 14 HELIX 14 AB5 THR B 1895 GLN B 1918 1 24 SHEET 1 AA1 2 THR A 26 ILE A 27 0 SHEET 2 AA1 2 ILE A 63 ASP A 64 -1 O ILE A 63 N ILE A 27 SHEET 1 AA2 2 PHE B1808 GLU B1810 0 SHEET 2 AA2 2 ARG B1847 HIS B1849 -1 O ILE B1848 N ILE B1809 SHEET 1 AA3 2 PRO B1841 MET B1842 0 SHEET 2 AA3 2 THR B1893 THR B1894 -1 O THR B1893 N MET B1842 LINK OD1 ASP A 20 CA CA A1001 1555 1555 2.41 LINK OD1 ASP A 22 CA CA A1001 1555 1555 2.13 LINK OD1 ASP A 24 CA CA A1001 1555 1555 2.34 LINK O THR A 26 CA CA A1001 1555 1555 2.25 LINK OE1 GLU A 31 CA CA A1001 1555 1555 2.42 LINK OE2 GLU A 31 CA CA A1001 1555 1555 2.66 LINK OD1 ASP A 56 CA CA A1002 1555 1555 2.21 LINK OD1 ASP A 58 CA CA A1002 1555 1555 2.23 LINK OD1 ASN A 60 CA CA A1002 1555 1555 2.69 LINK O THR A 62 CA CA A1002 1555 1555 2.42 LINK OE1 GLU A 67 CA CA A1002 1555 1555 2.66 LINK OE2 GLU A 67 CA CA A1002 1555 1555 2.49 LINK OD1 ASP A 93 CA CA A1004 1555 1555 2.23 LINK OD1 ASP A 95 CA CA A1004 1555 1555 2.14 LINK OD1 ASN A 97 CA CA A1004 1555 1555 2.34 LINK O TYR A 99 CA CA A1004 1555 1555 2.04 LINK OE1 GLU A 104 CA CA A1004 1555 1555 2.81 LINK OE2 GLU A 104 CA CA A1004 1555 1555 2.42 LINK OD1 ASP A 129 CA CA A1003 1555 1555 2.34 LINK OD2 ASP A 131 CA CA A1003 1555 1555 2.15 LINK OD1 ASP A 133 CA CA A1003 1555 1555 2.25 LINK O GLN A 135 CA CA A1003 1555 1555 2.28 LINK OE1 GLU A 140 CA CA A1003 1555 1555 2.55 LINK OE2 GLU A 140 CA CA A1003 1555 1555 2.98 LINK CA CA A1001 O HOH A1107 1555 1555 2.27 LINK CA CA A1002 O HOH A1101 1555 1555 2.00 LINK CA CA A1003 O HOH A1106 1555 1555 2.19 LINK CA CA A1004 O HOH A1103 1555 1555 2.36 CISPEP 1 GLU B 1823 PRO B 1824 0 8.42 CISPEP 2 LYS B 1829 PRO B 1830 0 -2.26 SITE 1 AC1 6 ASP A 20 ASP A 22 ASP A 24 THR A 26 SITE 2 AC1 6 GLU A 31 HOH A1107 SITE 1 AC2 6 ASP A 56 ASP A 58 ASN A 60 THR A 62 SITE 2 AC2 6 GLU A 67 HOH A1101 SITE 1 AC3 6 ASP A 129 ASP A 131 ASP A 133 GLN A 135 SITE 2 AC3 6 GLU A 140 HOH A1106 SITE 1 AC4 6 ASP A 93 ASP A 95 ASN A 97 TYR A 99 SITE 2 AC4 6 GLU A 104 HOH A1103 CRYST1 65.579 84.032 140.684 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015249 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011900 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007108 0.00000