HEADER STRUCTURAL PROTEIN 23-OCT-18 6MUN TITLE STRUCTURE OF HRPN10 BOUND TO UBQLN2 UBL COMPND MOL_ID: 1; COMPND 2 MOLECULE: 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 196-306; COMPND 5 SYNONYM: 26S PROTEASOME REGULATORY SUBUNIT RPN10,26S PROTEASOME COMPND 6 REGULATORY SUBUNIT S5A,ANTISECRETORY FACTOR 1,ASF,MULTIUBIQUITIN COMPND 7 CHAIN-BINDING PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: UBIQUILIN-2; COMPND 11 CHAIN: B, C; COMPND 12 FRAGMENT: UNP RESIDUES 26-103; COMPND 13 SYNONYM: CHAP1,DSK2 HOMOLOG,PROTEIN LINKING IAP WITH CYTOSKELETON 2, COMPND 14 HPLIC-2,UBIQUITIN-LIKE PRODUCT CHAP1/DSK2; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PSMD4, MCB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: UBQLN2, N4BP4, PLIC2, HRIHFB2157; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROTEASOME, SHUTTLE FACTOR, COMPLEX, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR X.CHEN,K.J.WALTERS REVDAT 3 01-MAY-24 6MUN 1 REMARK REVDAT 2 04-DEC-19 6MUN 1 REMARK REVDAT 1 04-SEP-19 6MUN 0 JRNL AUTH X.CHEN,D.L.EBELLE,B.J.WRIGHT,V.SRIDHARAN,E.HOOPER, JRNL AUTH 2 K.J.WALTERS JRNL TITL STRUCTURE OF HRPN10 BOUND TO UBQLN2 UBL ILLUSTRATES BASIS JRNL TITL 2 FOR COMPLEMENTARITY BETWEEN SHUTTLE FACTORS AND SUBSTRATES JRNL TITL 3 AT THE PROTEASOME. JRNL REF J.MOL.BIOL. V. 431 939 2019 JRNL REFN ESSN 1089-8638 JRNL PMID 30664872 JRNL DOI 10.1016/J.JMB.2019.01.021 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MUN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237618. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 15N] HRPN10 196 REMARK 210 -306, 1.38 MM UBQLN2 UBL, 20 MM REMARK 210 NAPO4, 50 MM SODIUM CHLORIDE, 2 REMARK 210 MM DTT, 0.1 % SODIUM AZIDE, 95% REMARK 210 H2O/5% D2O; 0.6 MM [U-100% 13C] REMARK 210 HRPN10 196-306, 1.38 MM UBQLN2 REMARK 210 UBL, 20 MM NAPO4, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 0.1 % SODIUM REMARK 210 AZIDE, 100% D2O; 0.6 MM [U-100% REMARK 210 15N; U-100% 2H] HRPN10 196-306, REMARK 210 1.38 MM UBQLN2 UBL, 20 MM NAPO4, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 0.1 % SODIUM AZIDE, 95% H2O/5% REMARK 210 D2O; 0.6 MM [U-100% 13C; U-100% REMARK 210 15N] UBQLN2 UBL, 0.6 MM HRPN10 REMARK 210 196-306, 20 MM NAPO4, 50 MM REMARK 210 SODIUM CHLORIDE, 2 MM DTT, 0.1 % REMARK 210 SODIUM AZIDE, 95% H2O/5% D2O; REMARK 210 0.6 MM [U-100% 13C; U-100% 15N] REMARK 210 UBQLN2 UBL, 0.6 MM HRPN10 196- REMARK 210 306, 20 MM NAPO4, 50 MM SODIUM REMARK 210 CHLORIDE, 2 MM DTT, 0.1 % SODIUM REMARK 210 AZIDE, 100% D2O; 0.6 MM [U-100% REMARK 210 13C; U-100% 15N] UBQLN2 UBL, 20 REMARK 210 MM NAPO4, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 0.1 % SODIUM AZIDE, REMARK 210 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 2D 1H-13C HSQC ALIPHATIC; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 HALF-FILTER NOESY; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 850 MHZ; 800 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, XEASY, X-PLOR REMARK 210 NIH, TALOS, PROCHECKNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 201 17.01 58.72 REMARK 500 1 VAL A 208 -41.75 -134.12 REMARK 500 1 GLU A 254 41.22 -98.42 REMARK 500 1 GLU A 299 171.91 58.01 REMARK 500 1 GLU A 304 82.39 53.92 REMARK 500 1 GLU B 42 -174.56 179.73 REMARK 500 1 GLU C 29 153.31 62.04 REMARK 500 1 SER C 67 -169.51 -108.09 REMARK 500 2 GLU A 205 18.19 58.33 REMARK 500 2 THR A 251 -33.31 -135.46 REMARK 500 2 ASP A 277 71.94 57.33 REMARK 500 2 GLU A 304 175.13 60.66 REMARK 500 2 GLU B 42 -172.90 -179.99 REMARK 500 2 HIS B 93 -157.20 -117.89 REMARK 500 3 THR A 251 26.17 -146.47 REMARK 500 3 THR A 273 25.26 45.63 REMARK 500 3 LEU A 275 66.04 -155.89 REMARK 500 3 PHE A 300 -48.94 77.00 REMARK 500 3 GLU B 42 -175.57 -178.74 REMARK 500 3 SER B 67 -169.83 -115.37 REMARK 500 3 HIS B 93 -168.89 -113.13 REMARK 500 3 GLU C 42 -177.53 179.79 REMARK 500 4 ASP A 209 116.08 -171.73 REMARK 500 4 ALA A 212 -68.09 -135.91 REMARK 500 4 ASP A 213 158.19 166.94 REMARK 500 4 GLU A 254 57.57 -96.55 REMARK 500 4 PHE A 270 -57.75 -137.26 REMARK 500 4 LEU A 275 81.66 56.66 REMARK 500 4 GLU B 42 -177.66 -177.28 REMARK 500 4 HIS B 93 -160.66 -129.32 REMARK 500 4 PRO C 30 172.26 -57.97 REMARK 500 4 PRO C 40 -8.20 -58.79 REMARK 500 4 GLU C 42 -145.11 -150.90 REMARK 500 5 GLU A 205 -105.91 67.01 REMARK 500 5 ALA A 249 72.31 49.82 REMARK 500 5 ASP A 255 -59.02 -157.39 REMARK 500 5 ARG A 272 -36.82 -149.62 REMARK 500 5 THR A 273 17.01 58.08 REMARK 500 5 LEU A 275 75.59 -117.15 REMARK 500 5 LEU A 278 16.51 56.46 REMARK 500 5 GLN A 296 102.34 73.56 REMARK 500 5 ALA A 303 -85.82 -135.76 REMARK 500 5 PRO B 30 170.56 -59.50 REMARK 500 5 GLU B 42 -176.61 -178.08 REMARK 500 5 HIS B 93 -167.26 -116.97 REMARK 500 5 GLU C 42 -178.54 -178.38 REMARK 500 5 ALA C 77 19.98 58.65 REMARK 500 5 ASP C 94 105.73 -45.86 REMARK 500 6 LEU A 199 61.12 61.20 REMARK 500 6 ALA A 249 104.05 -175.25 REMARK 500 REMARK 500 THIS ENTRY HAS 86 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YX4 RELATED DB: PDB REMARK 900 RELATED ID: 1YX5 RELATED DB: PDB REMARK 900 RELATED ID: 1YX6 RELATED DB: PDB REMARK 900 RELATED ID: 6233 RELATED DB: BMRB REMARK 900 RELATED ID: 1J8C RELATED DB: PDB REMARK 900 RELATED ID: 30528 RELATED DB: BMRB REMARK 900 SHUTTLE PROTEINS COMPLEX REMARK 900 RELATED ID: 2KDE RELATED DB: PDB REMARK 900 RELATED ID: 2KDF RELATED DB: PDB DBREF 6MUN A 196 306 UNP P55036 PSMD4_HUMAN 196 306 DBREF 6MUN B 26 103 UNP Q9UHD9 UBQL2_HUMAN 26 103 DBREF 6MUN C 26 103 UNP Q9UHD9 UBQL2_HUMAN 26 103 SEQRES 1 A 111 MET LEU GLY LEU GLY ALA SER ASP PHE GLU PHE GLY VAL SEQRES 2 A 111 ASP PRO SER ALA ASP PRO GLU LEU ALA LEU ALA LEU ARG SEQRES 3 A 111 VAL SER MET GLU GLU GLN ARG GLN ARG GLN GLU GLU GLU SEQRES 4 A 111 ALA ARG ARG ALA ALA ALA ALA SER ALA ALA GLU ALA GLY SEQRES 5 A 111 ILE ALA THR THR GLY THR GLU ASP SER ASP ASP ALA LEU SEQRES 6 A 111 LEU LYS MET THR ILE SER GLN GLN GLU PHE GLY ARG THR SEQRES 7 A 111 GLY LEU PRO ASP LEU SER SER MET THR GLU GLU GLU GLN SEQRES 8 A 111 ILE ALA TYR ALA MET GLN MET SER LEU GLN GLY ALA GLU SEQRES 9 A 111 PHE GLY GLN ALA GLU SER ALA SEQRES 1 B 78 ALA PRO ALA GLU PRO LYS ILE ILE LYS VAL THR VAL LYS SEQRES 2 B 78 THR PRO LYS GLU LYS GLU GLU PHE ALA VAL PRO GLU ASN SEQRES 3 B 78 SER SER VAL GLN GLN PHE LYS GLU ALA ILE SER LYS ARG SEQRES 4 B 78 PHE LYS SER GLN THR ASP GLN LEU VAL LEU ILE PHE ALA SEQRES 5 B 78 GLY LYS ILE LEU LYS ASP GLN ASP THR LEU ILE GLN HIS SEQRES 6 B 78 GLY ILE HIS ASP GLY LEU THR VAL HIS LEU VAL ILE LYS SEQRES 1 C 78 ALA PRO ALA GLU PRO LYS ILE ILE LYS VAL THR VAL LYS SEQRES 2 C 78 THR PRO LYS GLU LYS GLU GLU PHE ALA VAL PRO GLU ASN SEQRES 3 C 78 SER SER VAL GLN GLN PHE LYS GLU ALA ILE SER LYS ARG SEQRES 4 C 78 PHE LYS SER GLN THR ASP GLN LEU VAL LEU ILE PHE ALA SEQRES 5 C 78 GLY LYS ILE LEU LYS ASP GLN ASP THR LEU ILE GLN HIS SEQRES 6 C 78 GLY ILE HIS ASP GLY LEU THR VAL HIS LEU VAL ILE LYS HELIX 1 AA1 LEU A 199 GLU A 205 5 7 HELIX 2 AA2 ASP A 209 ALA A 212 5 4 HELIX 3 AA3 ASP A 213 ALA A 249 1 37 HELIX 4 AA4 GLU A 254 ARG A 272 1 19 HELIX 5 AA5 THR A 282 LEU A 295 1 14 HELIX 6 AA6 SER B 53 LYS B 66 1 14 HELIX 7 AA7 SER C 53 LYS C 66 1 14 HELIX 8 AA8 THR C 86 GLY C 91 1 6 SHEET 1 AA1 5 LYS B 43 PRO B 49 0 SHEET 2 AA1 5 ILE B 32 LYS B 38 -1 N ILE B 33 O VAL B 48 SHEET 3 AA1 5 LEU B 96 ILE B 102 1 O LEU B 96 N THR B 36 SHEET 4 AA1 5 LEU B 72 PHE B 76 -1 N VAL B 73 O VAL B 101 SHEET 5 AA1 5 LYS B 79 LEU B 81 -1 O LYS B 79 N PHE B 76 SHEET 1 AA2 5 LYS C 43 PRO C 49 0 SHEET 2 AA2 5 ILE C 32 LYS C 38 -1 N ILE C 33 O VAL C 48 SHEET 3 AA2 5 THR C 97 ILE C 102 1 O VAL C 98 N THR C 36 SHEET 4 AA2 5 LEU C 72 PHE C 76 -1 N VAL C 73 O VAL C 101 SHEET 5 AA2 5 LYS C 79 LEU C 81 -1 O LYS C 79 N PHE C 76 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1