HEADER HYDROLASE 24-OCT-18 6MV4 TITLE CRYSTAL STRUCTURE OF HUMAN COAGULATION FACTOR IXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: COAGULATION FACTOR IX; COMPND 3 CHAIN: H; COMPND 4 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 5 EC: 3.4.21.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: COAGULATION FACTOR IX; COMPND 9 CHAIN: L; COMPND 10 SYNONYM: CHRISTMAS FACTOR,PLASMA THROMBOPLASTIN COMPONENT,PTC; COMPND 11 EC: 3.4.21.22; COMPND 12 ENGINEERED: YES; COMPND 13 OTHER_DETAILS: INITIATING METHIONINE IS PRESENT IN THE SEQUENCE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: F9; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: F9; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS FACTOR IXA, HEPARIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR K.VADIVEL,H.A.SCHREUDER,A.LIESUM,S.P.BAJAJ REVDAT 4 11-OCT-23 6MV4 1 REMARK REVDAT 3 04-DEC-19 6MV4 1 REMARK REVDAT 2 10-APR-19 6MV4 1 JRNL REVDAT 1 20-FEB-19 6MV4 0 JRNL AUTH K.VADIVEL,H.A.SCHREUDER,A.LIESUM,A.E.SCHMIDT,G.GOLDSMITH, JRNL AUTH 2 S.P.BAJAJ JRNL TITL SODIUM-SITE IN SERINE PROTEASE DOMAIN OF HUMAN COAGULATION JRNL TITL 2 FACTOR IXA: EVIDENCE FROM THE CRYSTAL STRUCTURE AND JRNL TITL 3 MOLECULAR DYNAMICS SIMULATIONS STUDY. JRNL REF J. THROMB. HAEMOST. V. 17 574 2019 JRNL REFN ESSN 1538-7836 JRNL PMID 30725510 JRNL DOI 10.1111/JTH.14401 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.7 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.64 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 68.4 REMARK 3 NUMBER OF REFLECTIONS : 49062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.810 REMARK 3 FREE R VALUE TEST SET COUNT : 2362 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 50 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 8.11 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 982 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2036 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 926 REMARK 3 BIN R VALUE (WORKING SET) : 0.2022 REMARK 3 BIN FREE R VALUE : 0.2261 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 438 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.00450 REMARK 3 B22 (A**2) : -0.00450 REMARK 3 B33 (A**2) : 0.00900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.190 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.084 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.085 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.075 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.078 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 2465 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 3348 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 843 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL REMARK 3 GENERAL PLANES : 422 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 2423 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 315 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 10 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3511 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.23 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 15.93 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6MV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-18. REMARK 100 THE DEPOSITION ID IS D_1000237545. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS (VERSION JUN 1 REMARK 200 DATA SCALING SOFTWARE : AUTOPROC (VERSION 1.1.7), REMARK 200 AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49105 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.370 REMARK 200 RESOLUTION RANGE LOW (A) : 78.548 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 68.3 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : 0.03500 REMARK 200 FOR THE DATA SET : 26.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 12.1 REMARK 200 DATA REDUNDANCY IN SHELL : 5.20 REMARK 200 R MERGE FOR SHELL (I) : 0.46200 REMARK 200 R SYM FOR SHELL (I) : 0.46200 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 2WPJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 1 M NACL, 0.2 M AMMONIUM REMARK 280 SULFATE, 5 MM CALCIUM CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.22900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.11450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 84.34350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.34350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.11450 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.22900 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 56.22900 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 84.34350 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 28.11450 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 54.87900 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 28.11450 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 84.34350 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 54.87900 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 54.87900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 56.22900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 23350 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -583.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 -54.87900 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 54.87900 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 56.22900 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 109.75800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 54.87900 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 54.87900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 56.22900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH H 482 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 622 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 674 LIES ON A SPECIAL POSITION. REMARK 375 HOH H 695 LIES ON A SPECIAL POSITION. REMARK 375 HOH L 258 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 36 CE NZ REMARK 470 GLU L 119 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS H 71 -62.35 -129.11 REMARK 500 SER H 214 -71.38 -120.59 REMARK 500 GLU H 217 -127.76 -90.95 REMARK 500 GLN L 97 -82.39 -116.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H 764 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH H 765 DISTANCE = 6.76 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 70 OE1 REMARK 620 2 GLU H 70 OE2 46.2 REMARK 620 3 ASN H 72 O 98.5 73.5 REMARK 620 4 GLU H 75 O 156.1 154.2 85.9 REMARK 620 5 GLU H 77 OE2 103.7 57.4 56.8 98.4 REMARK 620 6 GLU H 80 OE2 88.5 99.1 160.2 95.3 103.6 REMARK 620 7 HOH H 411 O 69.0 114.7 115.2 87.8 169.2 84.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 311 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 70 OE2 REMARK 620 2 ASN H 72 O 79.9 REMARK 620 3 GLU H 75 O 140.3 80.1 REMARK 620 4 GLU H 77 OE1 135.3 92.9 79.6 REMARK 620 5 GLU H 77 OE2 88.9 103.8 129.2 49.8 REMARK 620 6 GLU H 80 OE2 105.3 172.5 92.5 87.1 81.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA H 312 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PHE H 184A O REMARK 620 2 MET H 221A O 143.1 REMARK 620 3 MET H 221A O 144.7 1.7 REMARK 620 4 LYS H 224 O 75.7 77.4 78.2 REMARK 620 5 HOH H 543 O 95.0 90.6 89.7 56.3 REMARK 620 6 HOH H 593 O 85.9 130.7 129.0 125.9 75.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 H 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMT H 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PBZ H 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA H 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA H 312 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 313 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 314 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL H 315 DBREF 6MV4 H 16 245 UNP P00740 FA9_HUMAN 227 461 DBREF 6MV4 L 87 139 UNP P00740 FA9_HUMAN 133 185 SEQADV 6MV4 MET L 86 UNP P00740 INITIATING METHIONINE SEQRES 1 H 235 VAL VAL GLY GLY GLU ASP ALA LYS PRO GLY GLN PHE PRO SEQRES 2 H 235 TRP GLN VAL VAL LEU ASN GLY LYS VAL ASP ALA PHE CYS SEQRES 3 H 235 GLY GLY SER ILE VAL ASN GLU LYS TRP ILE VAL THR ALA SEQRES 4 H 235 ALA HIS CYS VAL GLU THR GLY VAL LYS ILE THR VAL VAL SEQRES 5 H 235 ALA GLY GLU HIS ASN ILE GLU GLU THR GLU HIS THR GLU SEQRES 6 H 235 GLN LYS ARG ASN VAL ILE ARG ILE ILE PRO HIS HIS ASN SEQRES 7 H 235 TYR ASN ALA ALA ILE ASN LYS TYR ASN HIS ASP ILE ALA SEQRES 8 H 235 LEU LEU GLU LEU ASP GLU PRO LEU VAL LEU ASN SER TYR SEQRES 9 H 235 VAL THR PRO ILE CYS ILE ALA ASP LYS GLU TYR THR ASN SEQRES 10 H 235 ILE PHE LEU LYS PHE GLY SER GLY TYR VAL SER GLY TRP SEQRES 11 H 235 GLY ARG VAL PHE HIS LYS GLY ARG SER ALA LEU VAL LEU SEQRES 12 H 235 GLN TYR LEU ARG VAL PRO LEU VAL ASP ARG ALA THR CYS SEQRES 13 H 235 LEU ARG SER THR LYS PHE THR ILE TYR ASN ASN MET PHE SEQRES 14 H 235 CYS ALA GLY PHE HIS GLU GLY GLY ARG ASP SER CYS GLN SEQRES 15 H 235 GLY ASP SER GLY GLY PRO HIS VAL THR GLU VAL GLU GLY SEQRES 16 H 235 THR SER PHE LEU THR GLY ILE ILE SER TRP GLY GLU GLU SEQRES 17 H 235 CYS ALA MET LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 H 235 SER ARG TYR VAL ASN TRP ILE LYS GLU LYS THR LYS LEU SEQRES 19 H 235 THR SEQRES 1 L 54 MET THR CYS ASN ILE LYS ASN GLY ARG CYS GLU GLN PHE SEQRES 2 L 54 CYS LYS ASN SER ALA ASP ASN LYS VAL VAL CYS SER CYS SEQRES 3 L 54 THR GLU GLY TYR ARG LEU ALA GLU ASN GLN LYS SER CYS SEQRES 4 L 54 GLU PRO ALA VAL PRO PHE PRO CYS GLY ARG VAL SER VAL SEQRES 5 L 54 SER GLN HET SO4 H 301 5 HET SO4 H 302 5 HET SO4 H 303 5 HET SO4 H 304 5 HET SO4 H 305 5 HET SO4 H 306 5 HET EDO H 307 4 HET EDO H 308 4 HET FMT H 309 3 HET PBZ H 310 10 HET CA H 311 2 HET NA H 312 1 HET CL H 313 1 HET CL H 314 1 HET CL H 315 1 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM FMT FORMIC ACID HETNAM PBZ P-AMINO BENZAMIDINE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 9 EDO 2(C2 H6 O2) FORMUL 11 FMT C H2 O2 FORMUL 12 PBZ C7 H10 N3 1+ FORMUL 13 CA CA 2+ FORMUL 14 NA NA 1+ FORMUL 15 CL 3(CL 1-) FORMUL 18 HOH *438(H2 O) HELIX 1 AA1 ALA H 55 GLU H 60 5 6 HELIX 2 AA2 ASP H 125 PHE H 133 1 11 HELIX 3 AA3 ASP H 164 SER H 171 1 8 HELIX 4 AA4 TYR H 234 LYS H 243 1 10 HELIX 5 AA5 ILE L 90 CYS L 95 5 6 SHEET 1 AA1 8 GLU H 20 ASP H 21 0 SHEET 2 AA1 8 GLN H 156 VAL H 163 -1 O TYR H 157 N GLU H 20 SHEET 3 AA1 8 MET H 180 ALA H 183 -1 O CYS H 182 N VAL H 163 SHEET 4 AA1 8 GLY H 226 LYS H 230 -1 O TYR H 228 N PHE H 181 SHEET 5 AA1 8 THR H 206 TRP H 215 -1 N TRP H 215 O ILE H 227 SHEET 6 AA1 8 PRO H 198 VAL H 203 -1 N VAL H 203 O THR H 206 SHEET 7 AA1 8 SER H 135 GLY H 140 -1 N TYR H 137 O VAL H 200 SHEET 8 AA1 8 GLN H 156 VAL H 163 -1 O VAL H 160 N GLY H 136 SHEET 1 AA2 7 GLN H 30 ASN H 34 0 SHEET 2 AA2 7 CYS H 42 ASN H 48 -1 O CYS H 42 N LEU H 33 SHEET 3 AA2 7 TRP H 51 THR H 54 -1 O TRP H 51 N VAL H 47 SHEET 4 AA2 7 ALA H 104 LEU H 108 -1 O ALA H 104 N THR H 54 SHEET 5 AA2 7 GLN H 81 PRO H 90 -1 N ILE H 89 O LEU H 105 SHEET 6 AA2 7 THR H 65 ALA H 68 -1 N VAL H 66 O ARG H 83 SHEET 7 AA2 7 GLN H 30 ASN H 34 -1 N ASN H 34 O THR H 65 SHEET 1 AA3 2 PHE L 98 ASN L 101 0 SHEET 2 AA3 2 VAL L 107 SER L 110 -1 O VAL L 108 N LYS L 100 SHEET 1 AA4 2 TYR L 115 LEU L 117 0 SHEET 2 AA4 2 CYS L 124 PRO L 126 -1 O GLU L 125 N ARG L 116 SSBOND 1 CYS H 42 CYS H 58 1555 1555 2.04 SSBOND 2 CYS H 122 CYS L 132 1555 1555 2.03 SSBOND 3 CYS H 168 CYS H 182 1555 1555 2.01 SSBOND 4 CYS H 191 CYS H 220 1555 1555 2.06 SSBOND 5 CYS L 88 CYS L 99 1555 1555 2.04 SSBOND 6 CYS L 95 CYS L 109 1555 1555 2.03 SSBOND 7 CYS L 111 CYS L 124 1555 1555 2.05 LINK OE1 GLU H 70 CA A CA H 311 1555 1555 2.89 LINK OE2 GLU H 70 CA A CA H 311 1555 1555 2.69 LINK OE2 GLU H 70 CA B CA H 311 1555 1555 2.36 LINK O ASN H 72 CA A CA H 311 1555 1555 2.50 LINK O ASN H 72 CA B CA H 311 1555 1555 2.48 LINK O AGLU H 75 CA A CA H 311 1555 1555 2.30 LINK O BGLU H 75 CA B CA H 311 1555 1555 2.36 LINK OE1BGLU H 77 CA B CA H 311 1555 1555 2.70 LINK OE2AGLU H 77 CA A CA H 311 1555 1555 2.59 LINK OE2BGLU H 77 CA B CA H 311 1555 1555 2.49 LINK OE2AGLU H 80 CA A CA H 311 1555 1555 1.98 LINK OE2BGLU H 80 CA B CA H 311 1555 1555 2.31 LINK O PHE H 184A NA NA H 312 1555 1555 2.45 LINK O AMET H 221A NA NA H 312 1555 1555 2.45 LINK O BMET H 221A NA NA H 312 1555 1555 2.44 LINK O LYS H 224 NA NA H 312 1555 1555 2.79 LINK CA A CA H 311 O HOH H 411 1555 1555 2.37 LINK NA NA H 312 O HOH H 543 1555 1555 3.09 LINK NA NA H 312 O HOH H 593 1555 1555 2.45 SITE 1 AC1 7 LYS H 132 ARG H 165 LYS H 230 SO4 H 302 SITE 2 AC1 7 HOH H 443 HOH H 491 HOH H 535 SITE 1 AC2 7 ASN H 129A LYS H 132 SO4 H 301 HOH H 424 SITE 2 AC2 7 HOH H 467 HOH H 487 HOH H 508 SITE 1 AC3 5 LYS H 126 ARG H 233 HOH H 416 HOH H 419 SITE 2 AC3 5 HOH H 466 SITE 1 AC4 6 GLU H 127 TYR H 128 ILE H 129B CYS L 88 SITE 2 AC4 6 ASN L 92 HOH L 208 SITE 1 AC5 5 ASN H 178 ARG H 233 HOH H 493 HOH H 542 SITE 2 AC5 5 HOH H 681 SITE 1 AC6 7 ASN H 97 PHE H 174 THR H 175 TYR H 177 SITE 2 AC6 7 HOH H 496 HOH H 587 HOH H 594 SITE 1 AC7 8 GLY H 19 GLU H 20 TYR H 157 LEU H 158 SITE 2 AC7 8 ARG H 159 HOH H 422 HOH H 503 HOH H 591 SITE 1 AC8 2 LEU H 162 HOH H 431 SITE 1 AC9 4 HOH H 423 HOH H 485 HOH H 496 HOH H 592 SITE 1 AD1 12 ASP H 189 SER H 190 CYS H 191 GLN H 192 SITE 2 AD1 12 SER H 195 TRP H 215 GLY H 216 GLU H 217 SITE 3 AD1 12 CYS H 220 GLY H 226 HOH H 523 HOH H 569 SITE 1 AD2 7 GLU H 70 ASN H 72 ILE H 73 GLU H 75 SITE 2 AD2 7 GLU H 77 GLU H 80 HOH H 411 SITE 1 AD3 7 PHE H 184A HIS H 185 GLY H 187 MET H 221A SITE 2 AD3 7 LYS H 224 HOH H 543 HOH H 593 SITE 1 AD4 3 LYS H 241 HOH H 459 HOH H 765 SITE 1 AD5 2 ARG H 188A HOH H 541 SITE 1 AD6 2 PHE H 133 HIS H 185 CRYST1 109.758 109.758 112.458 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008892 0.00000